Wall clock time and date at job start Tue Mar 31 2020 17:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 C 1.52997 * 109.47328 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46923 * 180.02562 * 6 5 4 8 8 C 1.36932 * 119.99810 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99856 * 359.97438 * 8 7 6 10 10 C 1.38810 * 120.00120 * 179.97438 * 8 7 6 11 11 N 1.31625 * 119.99996 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99849 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47147 * 89.99789 * 12 10 8 14 14 H 1.48505 * 109.46930 * 209.99898 * 12 10 8 15 15 H 1.48496 * 109.46773 * 329.99567 * 12 10 8 16 16 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 17 17 C 1.34773 * 119.99910 * 84.99768 * 16 2 1 18 18 O 1.21279 * 120.00033 * 0.02562 * 17 16 2 19 19 C 1.50699 * 119.99928 * 180.02562 * 17 16 2 20 20 H 1.09001 * 109.47288 * 39.99846 * 19 17 16 21 21 C 1.50700 * 109.47366 * 280.00362 * 19 17 16 22 22 C 1.38242 * 119.99925 * 279.72879 * 21 19 17 23 23 C 1.38234 * 119.99913 * 179.80764 * 22 21 19 24 24 C 1.38232 * 120.00035 * 0.39268 * 23 22 21 25 25 C 1.38241 * 120.00128 * 359.86186 * 24 23 22 26 26 C 1.38232 * 119.99756 * 359.95222 * 25 24 23 27 27 N 1.46901 * 109.47284 * 160.00176 * 19 17 16 28 28 C 1.46906 * 111.00119 * 179.97438 * 27 19 17 29 29 C 1.46896 * 110.99995 * 303.95132 * 27 19 17 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 34 34 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 35 35 H 1.09002 * 109.46786 * 300.00010 * 5 4 2 36 36 H 1.09001 * 109.46883 * 59.99398 * 5 4 2 37 37 H 1.09002 * 109.47196 * 299.99760 * 6 5 4 38 38 H 1.08998 * 109.46963 * 60.00165 * 6 5 4 39 39 H 0.96994 * 120.00097 * 359.97438 * 7 6 5 40 40 H 0.97003 * 119.99735 * 180.02562 * 11 10 8 41 41 H 0.97003 * 119.99995 * 265.00643 * 16 2 1 42 42 H 1.08005 * 119.99658 * 359.97438 * 22 21 19 43 43 H 1.08004 * 119.99569 * 180.23086 * 23 22 21 44 44 H 1.08004 * 119.99799 * 179.83203 * 24 23 22 45 45 H 1.07994 * 119.99632 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.99655 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.46901 * 63.95493 * 28 27 19 48 48 H 1.08999 * 109.46974 * 183.95446 * 28 27 19 49 49 H 1.08994 * 109.47355 * 303.95535 * 28 27 19 50 50 H 1.09005 * 109.47073 * 56.04792 * 29 27 19 51 51 H 1.08998 * 109.47221 * 176.04511 * 29 27 19 52 52 H 1.08997 * 109.47377 * 296.05105 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 7 5.5349 -1.2301 2.6252 8 6 6.2186 -1.8042 3.6635 9 1 5.6815 -2.3333 4.4368 10 6 7.6020 -1.7062 3.7220 11 7 8.2592 -2.2577 4.7202 12 14 8.5310 -0.7918 2.3839 13 1 8.6620 0.6385 2.7613 14 1 9.8819 -1.3874 2.2238 15 1 7.7875 -0.8997 1.1030 16 7 2.0184 -0.6907 -1.1962 17 6 2.1470 -0.0184 -2.3571 18 8 1.8590 1.1585 -2.4115 19 6 2.6488 -0.7290 -3.5877 20 1 2.2138 -1.7274 -3.6335 21 6 4.1506 -0.8378 -3.5278 22 6 4.9366 0.2435 -3.8803 23 6 6.3142 0.1450 -3.8215 24 6 6.9060 -1.0373 -3.4180 25 6 6.1201 -2.1202 -3.0705 26 6 4.7425 -2.0205 -3.1256 27 7 2.2602 0.0298 -4.7840 28 6 2.7340 -0.6343 -6.0057 29 6 0.8065 0.2369 -4.8269 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6055 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2057 35 1 3.9995 -1.0729 0.4260 36 1 3.8532 0.4370 1.3572 37 1 3.6402 -0.8741 3.4508 38 1 3.7865 -2.3843 2.5200 39 1 6.0172 -0.7553 1.9305 40 1 9.2259 -2.1889 4.7613 41 1 2.2490 -1.6319 -1.1526 42 1 4.4742 1.1661 -4.1990 43 1 6.9281 0.9910 -4.0933 44 1 7.9823 -1.1151 -3.3746 45 1 6.5826 -3.0440 -2.7557 46 1 4.1286 -2.8664 -2.8538 47 1 2.2460 -1.6039 -6.1048 48 1 2.4943 -0.0167 -6.8713 49 1 3.8133 -0.7751 -5.9475 50 1 0.4826 0.7304 -3.9105 51 1 0.5534 0.8605 -5.6843 52 1 0.3048 -0.7265 -4.9175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506951449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:34 Heat of formation + Delta-G solvation = 5.467097 kcal Electronic energy + Delta-G solvation = -29693.268015 eV Core-core repulsion = 25886.029019 eV Total energy + Delta-G solvation = -3807.238995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.73916 -39.03647 -37.43155 -36.35798 -34.97544 -32.83696 -32.06106 -31.07156 -30.95553 -29.77466 -28.04591 -27.30509 -25.90248 -23.39790 -22.80364 -22.46976 -22.04048 -20.96669 -20.71776 -20.19211 -17.56570 -17.48538 -17.07884 -16.63873 -15.80897 -15.70943 -14.95323 -14.73110 -14.68431 -14.55076 -14.39510 -14.32260 -13.92640 -13.61393 -13.46467 -13.27753 -13.11215 -12.82797 -12.68272 -12.56571 -12.44906 -12.28387 -12.21780 -12.10214 -11.81827 -11.64951 -11.29826 -11.16772 -11.10334 -10.94351 -10.89804 -10.50918 -10.39353 -10.09464 -9.98173 -9.57679 -9.15674 -8.98830 -8.87318 -8.79261 -8.66309 -7.20740 -5.75541 -3.10483 1.15402 1.34300 2.51697 2.87937 3.38981 3.43264 3.46217 3.55661 3.84435 4.41702 4.54369 4.60983 4.64503 4.73310 4.86275 4.95335 4.97442 5.00301 5.06130 5.08459 5.10862 5.29010 5.30978 5.35110 5.41359 5.43221 5.53505 5.53791 5.54894 5.62319 5.69477 5.76959 5.82075 5.85995 5.93074 5.98719 6.02197 6.10381 6.13365 6.31015 6.35109 6.35579 6.43016 6.46852 6.63555 6.69875 6.76963 6.80442 6.89905 7.39333 8.01244 8.12404 8.43944 9.23524 9.96292 10.16596 11.43023 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.003768 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.529834 B = 7429.050741 C = 9481.489837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.129 4.129 6 C 0.158 3.842 7 N -0.757 5.757 8 C -0.243 4.243 9 H 0.089 0.911 10 C 0.003 3.997 11 N -0.936 5.936 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.276 1.276 16 N -0.720 5.720 17 C 0.525 3.475 18 O -0.519 6.519 19 C 0.111 3.889 20 H 0.066 0.934 21 C -0.089 4.089 22 C -0.084 4.084 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.110 4.110 27 N -0.520 5.520 28 C 0.024 3.976 29 C 0.016 3.984 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.399 0.601 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.025 0.975 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 1.608 -22.458 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.167 4.167 6 C 0.030 3.970 7 N -0.403 5.403 8 C -0.373 4.373 9 H 0.107 0.893 10 C -0.192 4.192 11 N -0.584 5.584 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.202 1.202 16 N -0.372 5.372 17 C 0.309 3.691 18 O -0.394 6.394 19 C -0.001 4.001 20 H 0.084 0.916 21 C -0.089 4.089 22 C -0.102 4.102 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.128 4.128 27 N -0.244 5.244 28 C -0.124 4.124 29 C -0.132 4.132 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.233 0.767 42 H 0.151 0.849 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.044 0.956 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.090 0.910 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.931 2.815 -22.250 26.943 hybrid contribution 0.623 -0.741 -0.829 1.274 sum -14.309 2.074 -23.079 27.234 Atomic orbital electron populations 1.22165 0.95378 1.01979 1.02426 1.21043 0.93601 0.97794 0.83781 0.89337 1.21837 0.96602 1.00910 0.96724 1.21774 0.94096 1.01346 0.99476 1.20618 0.84892 0.97004 0.94438 1.42730 1.01729 1.67174 1.28639 1.19075 0.89922 1.27480 1.00821 0.89280 1.24670 0.96176 1.00578 0.97807 1.69709 1.07293 1.49457 1.31923 0.86552 0.79611 0.80011 0.82464 1.21083 1.21725 1.20222 1.46092 1.67305 1.14118 1.09650 1.20155 0.77337 0.87423 0.84147 1.90680 1.48909 1.15333 1.84516 1.20452 0.93381 0.95863 0.90405 0.91605 1.19287 0.92410 0.94803 1.02444 1.21081 0.93117 0.98562 0.97430 1.21210 0.94877 0.97846 1.00299 1.21260 1.00137 0.93326 0.98247 1.21127 0.93531 0.99181 0.99638 1.20974 0.95220 0.96799 0.99829 1.61684 1.14281 1.47786 1.00626 1.22457 1.01498 0.96776 0.91704 1.22575 0.86214 0.99910 1.04457 0.91461 0.92398 0.92538 0.90089 0.91298 0.92064 0.92063 0.95675 0.95815 0.80694 0.93098 0.76687 0.84946 0.85983 0.86013 0.85708 0.86160 0.95615 0.90926 0.90745 0.89624 0.91005 0.96066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.14 1.54 2.57 -67.93 -0.17 1.37 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -1.36 4.75 -26.73 -0.13 -1.49 16 5 C -0.13 -1.94 5.22 -26.73 -0.14 -2.07 16 6 C 0.16 3.03 6.26 -4.04 -0.03 3.01 16 7 N -0.76 -18.48 5.41 -59.91 -0.32 -18.80 16 8 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 9 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 10 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 11 N -0.94 -29.78 13.97 55.49 0.78 -29.01 16 12 Si 0.88 22.56 27.74 -169.99 -4.71 17.85 16 13 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 15 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 16 N -0.72 -7.57 4.53 -53.81 -0.24 -7.81 16 17 C 0.52 6.37 6.16 -10.99 -0.07 6.30 16 18 O -0.52 -7.95 14.37 5.56 0.08 -7.87 16 19 C 0.11 1.15 2.08 -70.02 -0.15 1.00 16 20 H 0.07 0.57 8.00 -51.93 -0.42 0.16 16 21 C -0.09 -0.99 3.73 -104.62 -0.39 -1.38 16 22 C -0.08 -1.00 8.41 -39.58 -0.33 -1.33 16 23 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 24 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.11 -1.17 9.67 -39.58 -0.38 -1.55 16 27 N -0.52 -5.31 3.93 -246.00 -0.97 -6.28 16 28 C 0.02 0.19 9.26 60.07 0.56 0.75 16 29 C 0.02 0.15 9.19 60.06 0.55 0.70 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.36 8.68 5.53 -40.82 -0.23 8.46 16 40 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 42 H 0.13 1.65 7.71 -52.48 -0.40 1.24 16 43 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 44 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 47 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 50 H 0.09 0.97 5.68 -51.93 -0.30 0.67 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 417.07 15.07 6.29 6.29 Total: -1.00 -34.37 417.07 -10.05 -44.42 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -9.17 Total: 9.46 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.77 Total: -8.25 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.76 Total: -61.89 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.08 Total: -7.87 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.37 -10.05 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.888 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds