Wall clock time and date at job start Tue Mar 31 2020 17:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 C 1.52997 * 109.47328 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46923 * 180.02562 * 6 5 4 8 8 C 1.36932 * 119.99810 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99856 * 359.97438 * 8 7 6 10 10 C 1.38810 * 120.00120 * 179.97438 * 8 7 6 11 11 N 1.31625 * 119.99996 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99849 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47147 * 89.99789 * 12 10 8 14 14 H 1.48505 * 109.46930 * 209.99898 * 12 10 8 15 15 H 1.48496 * 109.46773 * 329.99567 * 12 10 8 16 16 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 17 17 C 1.34773 * 119.99910 * 84.99768 * 16 2 1 18 18 O 1.21279 * 120.00033 * 0.02562 * 17 16 2 19 19 C 1.50699 * 119.99928 * 180.02562 * 17 16 2 20 20 H 1.09001 * 109.47288 * 39.99846 * 19 17 16 21 21 C 1.50700 * 109.47366 * 280.00362 * 19 17 16 22 22 C 1.38242 * 119.99925 * 279.72879 * 21 19 17 23 23 C 1.38234 * 119.99913 * 179.80764 * 22 21 19 24 24 C 1.38232 * 120.00035 * 0.39268 * 23 22 21 25 25 C 1.38241 * 120.00128 * 359.86186 * 24 23 22 26 26 C 1.38232 * 119.99756 * 359.95222 * 25 24 23 27 27 N 1.46901 * 109.47284 * 160.00176 * 19 17 16 28 28 C 1.46906 * 111.00119 * 179.97438 * 27 19 17 29 29 C 1.46896 * 110.99995 * 303.95132 * 27 19 17 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 34 34 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 35 35 H 1.09002 * 109.46786 * 300.00010 * 5 4 2 36 36 H 1.09001 * 109.46883 * 59.99398 * 5 4 2 37 37 H 1.09002 * 109.47196 * 299.99760 * 6 5 4 38 38 H 1.08998 * 109.46963 * 60.00165 * 6 5 4 39 39 H 0.96994 * 120.00097 * 359.97438 * 7 6 5 40 40 H 0.97003 * 119.99735 * 180.02562 * 11 10 8 41 41 H 0.97003 * 119.99995 * 265.00643 * 16 2 1 42 42 H 1.08005 * 119.99658 * 359.97438 * 22 21 19 43 43 H 1.08004 * 119.99569 * 180.23086 * 23 22 21 44 44 H 1.08004 * 119.99799 * 179.83203 * 24 23 22 45 45 H 1.07994 * 119.99632 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.99655 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.46901 * 63.95493 * 28 27 19 48 48 H 1.08999 * 109.46974 * 183.95446 * 28 27 19 49 49 H 1.08994 * 109.47355 * 303.95535 * 28 27 19 50 50 H 1.09005 * 109.47073 * 56.04792 * 29 27 19 51 51 H 1.08998 * 109.47221 * 176.04511 * 29 27 19 52 52 H 1.08997 * 109.47377 * 296.05105 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 7 5.5349 -1.2301 2.6252 8 6 6.2186 -1.8042 3.6635 9 1 5.6815 -2.3333 4.4368 10 6 7.6020 -1.7062 3.7220 11 7 8.2592 -2.2577 4.7202 12 14 8.5310 -0.7918 2.3839 13 1 8.6620 0.6385 2.7613 14 1 9.8819 -1.3874 2.2238 15 1 7.7875 -0.8997 1.1030 16 7 2.0184 -0.6907 -1.1962 17 6 2.1470 -0.0184 -2.3571 18 8 1.8590 1.1585 -2.4115 19 6 2.6488 -0.7290 -3.5877 20 1 2.2138 -1.7274 -3.6335 21 6 4.1506 -0.8378 -3.5278 22 6 4.9366 0.2435 -3.8803 23 6 6.3142 0.1450 -3.8215 24 6 6.9060 -1.0373 -3.4180 25 6 6.1201 -2.1202 -3.0705 26 6 4.7425 -2.0205 -3.1256 27 7 2.2602 0.0298 -4.7840 28 6 2.7340 -0.6343 -6.0057 29 6 0.8065 0.2369 -4.8269 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6055 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2057 35 1 3.9995 -1.0729 0.4260 36 1 3.8532 0.4370 1.3572 37 1 3.6402 -0.8741 3.4508 38 1 3.7865 -2.3843 2.5200 39 1 6.0172 -0.7553 1.9305 40 1 9.2259 -2.1889 4.7613 41 1 2.2490 -1.6319 -1.1526 42 1 4.4742 1.1661 -4.1990 43 1 6.9281 0.9910 -4.0933 44 1 7.9823 -1.1151 -3.3746 45 1 6.5826 -3.0440 -2.7557 46 1 4.1286 -2.8664 -2.8538 47 1 2.2460 -1.6039 -6.1048 48 1 2.4943 -0.0167 -6.8713 49 1 3.8133 -0.7751 -5.9475 50 1 0.4826 0.7304 -3.9105 51 1 0.5534 0.8605 -5.6843 52 1 0.3048 -0.7265 -4.9175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506951449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:33 Heat of formation + Delta-G solvation = -16.831895 kcal Electronic energy + Delta-G solvation = -29694.234972 eV Core-core repulsion = 25886.029019 eV Total energy + Delta-G solvation = -3808.205952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.60293 -39.90391 -38.34873 -37.43876 -36.52106 -34.27095 -33.31563 -32.38417 -31.79545 -31.06082 -28.75184 -28.06138 -27.36505 -24.60744 -23.93858 -23.34951 -23.09372 -22.47252 -21.62759 -21.04593 -19.62350 -18.42347 -17.88892 -17.53304 -16.64963 -16.60900 -16.55326 -15.92512 -15.83949 -15.62539 -15.37087 -15.28527 -15.25261 -14.88573 -14.50908 -14.28915 -14.10668 -13.99552 -13.67244 -13.58093 -13.50873 -13.29410 -13.18046 -13.07094 -12.86612 -12.84059 -12.51604 -12.50471 -12.08807 -12.03607 -11.96506 -11.92716 -11.87465 -11.76020 -11.54240 -10.98444 -10.92100 -10.05904 -9.83042 -9.64345 -9.36154 -9.30330 -8.04504 -5.37464 0.31372 0.49196 1.36109 1.38673 1.46207 1.60998 2.06232 2.46433 2.75973 3.06454 3.27188 3.49185 3.62115 3.78451 3.89521 3.92905 4.09538 4.12525 4.16030 4.18262 4.27434 4.32171 4.39343 4.41597 4.55830 4.58296 4.63932 4.65332 4.66952 4.70963 4.81455 4.84681 4.90531 4.99619 5.00786 5.02015 5.04937 5.11834 5.15142 5.30913 5.35804 5.41732 5.52053 5.55238 5.59266 5.62361 5.74462 5.88595 6.01703 6.07571 6.20325 6.56697 7.06654 7.25545 7.84145 8.02018 9.17148 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.003768 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.529834 B = 7429.050741 C = 9481.489837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.153 3.847 7 N -0.762 5.762 8 C -0.235 4.235 9 H 0.058 0.942 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.953 3.047 13 H -0.282 1.282 14 H -0.292 1.292 15 H -0.253 1.253 16 N -0.712 5.712 17 C 0.523 3.477 18 O -0.556 6.556 19 C 0.115 3.885 20 H 0.088 0.912 21 C -0.090 4.090 22 C -0.096 4.096 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.111 4.111 27 N -0.538 5.538 28 C 0.027 3.973 29 C 0.021 3.979 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.023 0.977 38 H 0.030 0.970 39 H 0.364 0.636 40 H 0.258 0.742 41 H 0.410 0.590 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.037 0.963 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.079 0.921 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 1.045 -24.205 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.153 4.153 6 C 0.027 3.973 7 N -0.407 5.407 8 C -0.366 4.366 9 H 0.076 0.924 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.780 3.220 13 H -0.208 1.208 14 H -0.218 1.218 15 H -0.178 1.178 16 N -0.364 5.364 17 C 0.308 3.692 18 O -0.434 6.434 19 C 0.004 3.996 20 H 0.106 0.894 21 C -0.091 4.091 22 C -0.115 4.115 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.129 4.129 27 N -0.263 5.263 28 C -0.120 4.120 29 C -0.127 4.127 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.196 0.804 40 H 0.067 0.933 41 H 0.246 0.754 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.056 0.944 48 H 0.099 0.901 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.098 0.902 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.131 2.234 -24.017 29.018 hybrid contribution 0.907 -0.587 -0.223 1.104 sum -15.224 1.647 -24.240 28.671 Atomic orbital electron populations 1.22086 0.93783 1.02986 1.02306 1.20944 0.94738 0.96461 0.83702 0.91812 1.21757 0.93568 1.02345 0.97252 1.21633 0.96709 0.99878 0.97130 1.20837 0.82076 0.97874 0.96488 1.42798 1.03782 1.66718 1.27452 1.19076 0.90193 1.26351 1.00986 0.92391 1.25486 0.97265 1.02192 1.00485 1.69882 1.07523 1.51628 1.34368 0.85437 0.78015 0.78280 0.80261 1.20841 1.21821 1.17766 1.46057 1.66656 1.14563 1.09152 1.20501 0.76720 0.87039 0.84901 1.90667 1.50596 1.17019 1.85129 1.20432 0.92890 0.96602 0.89699 0.89409 1.19386 0.92761 0.94760 1.02194 1.21092 0.93542 0.98583 0.98246 1.21391 0.94933 0.98446 1.00373 1.21493 1.00927 0.93462 0.98437 1.21398 0.94077 0.99586 0.99684 1.21237 0.95291 0.97267 0.99120 1.61651 1.14792 1.48610 1.01202 1.22442 1.01018 0.97405 0.91145 1.22501 0.85943 1.00593 1.03657 0.90482 0.93672 0.90904 0.89141 0.89304 0.91994 0.93168 0.95881 0.95219 0.80368 0.93285 0.75422 0.86154 0.84916 0.84974 0.84660 0.83781 0.94425 0.90081 0.91510 0.91788 0.90237 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.48 71.98 0.68 -1.80 16 2 C 0.15 2.88 2.57 44.99 0.12 3.00 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.11 -2.16 4.75 30.59 0.15 -2.02 16 5 C -0.12 -3.21 5.22 30.59 0.16 -3.05 16 6 C 0.15 5.64 6.26 86.38 0.54 6.18 16 7 N -0.76 -36.23 5.41 -343.45 -1.86 -38.08 16 8 C -0.24 -13.63 10.47 84.03 0.88 -12.75 16 9 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 10 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 11 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 12 Si 0.95 46.31 27.74 68.60 1.90 48.22 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 16 N -0.71 -13.44 4.53 -442.54 -2.00 -15.44 16 17 C 0.52 12.02 6.16 87.66 0.54 12.56 16 18 O -0.56 -16.95 14.37 -3.03 -0.04 -16.99 16 19 C 0.12 2.18 2.08 43.42 0.09 2.27 16 20 H 0.09 1.25 8.00 -2.39 -0.02 1.23 16 21 C -0.09 -1.86 3.73 -19.86 -0.07 -1.93 16 22 C -0.10 -2.23 8.41 22.27 0.19 -2.05 16 23 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 24 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 25 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 26 C -0.11 -2.09 9.67 22.27 0.22 -1.87 16 27 N -0.54 -10.28 3.93 -932.21 -3.66 -13.94 16 28 C 0.03 0.40 9.26 127.69 1.18 1.58 16 29 C 0.02 0.36 9.19 127.69 1.17 1.53 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.73 7.75 -2.39 -0.02 1.71 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.36 16.75 5.53 -92.71 -0.51 16.24 16 40 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.41 5.96 8.60 -92.71 -0.80 5.16 16 42 H 0.12 3.03 7.71 -2.91 -0.02 3.01 16 43 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 44 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.14 1.93 8.04 -2.91 -0.02 1.91 16 47 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.07 1.08 6.36 -2.39 -0.02 1.07 16 50 H 0.06 1.42 5.68 -2.38 -0.01 1.40 16 51 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -74.96 417.07 1.14 -73.82 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.48 Total: 35.01 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 6.98 Total: -9.31 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -7.22 Total: -130.75 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.04 Total: -16.99 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.22 kcal Total: -74.96 1.14 -73.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.989 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds