Wall clock time and date at job start Tue Mar 31 2020 17:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.52999 * 109.47283 * 175.00170 * 4 2 1 6 6 C 1.53001 * 109.46946 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46786 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99823 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.38815 * 120.00354 * 180.02562 * 8 7 6 11 11 N 1.31617 * 119.99659 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00512 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46930 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47164 * 119.99762 * 12 10 8 15 15 H 1.48492 * 109.47270 * 240.00109 * 12 10 8 16 16 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 17 17 C 1.34777 * 120.00199 * 275.00460 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 2 20 20 H 1.08995 * 109.47357 * 39.71838 * 19 17 16 21 21 C 1.50698 * 109.46895 * 279.72002 * 19 17 16 22 22 C 1.38233 * 120.00333 * 279.72991 * 21 19 17 23 23 C 1.38239 * 119.99988 * 179.81122 * 22 21 19 24 24 C 1.38231 * 120.00045 * 0.39446 * 23 22 21 25 25 C 1.38233 * 120.00049 * 359.85978 * 24 23 22 26 26 C 1.38233 * 119.99962 * 359.94802 * 25 24 23 27 27 N 1.46895 * 109.46992 * 159.72213 * 19 17 16 28 28 C 1.46899 * 110.99838 * 179.97438 * 27 19 17 29 29 C 1.46900 * 111.00286 * 303.95300 * 27 19 17 30 30 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 31 31 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 32 32 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 34 34 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 35 35 H 1.08997 * 109.47141 * 299.99510 * 5 4 2 36 36 H 1.08998 * 109.47192 * 59.99829 * 5 4 2 37 37 H 1.08997 * 109.47150 * 299.99932 * 6 5 4 38 38 H 1.08998 * 109.46966 * 60.00118 * 6 5 4 39 39 H 0.96999 * 120.00227 * 0.02562 * 7 6 5 40 40 H 0.97001 * 120.00081 * 179.97438 * 11 10 8 41 41 H 0.97000 * 119.99484 * 94.99557 * 16 2 1 42 42 H 1.08000 * 119.99608 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.99627 * 180.22791 * 23 22 21 44 44 H 1.07999 * 119.99833 * 179.83059 * 24 23 22 45 45 H 1.08004 * 120.00012 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00026 * 179.97438 * 26 25 24 47 47 H 1.09003 * 109.47509 * 63.95367 * 28 27 19 48 48 H 1.09003 * 109.46933 * 183.95311 * 28 27 19 49 49 H 1.09001 * 109.47152 * 303.95169 * 28 27 19 50 50 H 1.09001 * 109.47229 * 56.04063 * 29 27 19 51 51 H 1.08998 * 109.47412 * 176.04905 * 29 27 19 52 52 H 1.09001 * 109.46861 * 296.04889 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 7 5.5348 -1.2310 -2.6246 8 6 6.2187 -1.8060 -3.6624 9 1 5.6817 -2.3357 -4.4354 10 6 7.6021 -1.7081 -3.7209 11 7 8.2566 -1.0630 -2.7786 12 14 8.5350 -2.4918 -5.1369 13 1 7.5746 -3.1521 -6.0570 14 1 9.2863 -1.4445 -5.8745 15 1 9.4855 -3.5010 -4.6051 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8589 1.1586 2.4115 19 6 2.6553 -0.7271 3.5861 20 1 3.4603 -1.4068 3.3067 21 6 1.5319 -1.5106 4.2147 22 6 0.6059 -0.8695 5.0161 23 6 -0.4269 -1.5876 5.5895 24 6 -0.5289 -2.9482 5.3681 25 6 0.4001 -3.5903 4.5709 26 6 1.4305 -2.8716 3.9943 27 7 3.1607 0.2616 4.5478 28 6 3.6650 -0.3947 5.7614 29 6 4.1948 1.1082 3.9381 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3573 36 1 3.9994 -1.0728 -0.4260 37 1 3.7865 -2.3851 -2.5186 38 1 3.6402 -0.8757 -3.4505 39 1 6.0172 -0.7556 -1.9302 40 1 9.2234 -0.9949 -2.8193 41 1 2.2490 -1.6317 1.1526 42 1 0.6878 0.1930 5.1921 43 1 -1.1524 -1.0859 6.2127 44 1 -1.3341 -3.5096 5.8183 45 1 0.3207 -4.6535 4.3983 46 1 2.1566 -3.3733 3.3718 47 1 4.5221 -1.0186 5.5078 48 1 3.9681 0.3625 6.4846 49 1 2.8791 -1.0149 6.1925 50 1 3.7946 1.5820 3.0417 51 1 4.5016 1.8757 4.6487 52 1 5.0556 0.4950 3.6714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506951450.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:38 Heat of formation + Delta-G solvation = 0.594346 kcal Electronic energy + Delta-G solvation = -29072.107956 eV Core-core repulsion = 25264.657662 eV Total energy + Delta-G solvation = -3807.450294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71475 -39.10170 -37.37046 -36.26527 -34.81816 -32.82420 -32.06824 -31.12861 -30.93718 -29.41005 -27.95221 -27.26415 -25.66132 -23.40421 -23.00148 -22.56782 -22.20619 -20.87635 -20.66886 -20.15228 -17.55351 -17.14089 -17.01452 -16.49666 -15.94464 -15.69405 -14.86620 -14.77854 -14.66256 -14.57733 -14.45273 -14.14346 -13.77559 -13.60312 -13.48124 -13.27551 -13.11998 -12.92996 -12.70830 -12.51758 -12.39900 -12.21682 -12.10693 -12.03353 -11.66764 -11.33079 -11.25604 -11.22534 -11.11861 -10.87876 -10.80741 -10.46231 -10.40925 -9.99823 -9.96072 -9.69622 -9.15383 -9.06710 -8.91312 -8.87711 -8.56754 -6.92080 -5.76930 -3.05524 1.01175 1.17504 2.57509 2.95358 3.42475 3.47685 3.47905 3.50356 3.85783 4.39956 4.54994 4.63144 4.63783 4.76499 4.82801 4.90597 4.90895 5.04978 5.09720 5.16288 5.20800 5.24849 5.38336 5.43593 5.45307 5.50076 5.57047 5.57931 5.64899 5.67032 5.68770 5.79149 5.83208 5.95905 5.98133 6.09053 6.12344 6.18698 6.21302 6.28304 6.30300 6.35433 6.40163 6.50592 6.67356 6.74808 6.79366 6.85827 6.89428 7.46715 7.69756 8.19568 8.42191 9.53045 10.12065 10.46346 11.46159 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.002459 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.209357 B =11383.946965 C =11830.723506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 N -0.719 5.719 17 C 0.526 3.474 18 O -0.520 6.520 19 C 0.106 3.894 20 H 0.070 0.930 21 C -0.081 4.081 22 C -0.082 4.082 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.111 4.111 27 N -0.520 5.520 28 C 0.023 3.977 29 C 0.014 3.986 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.399 0.601 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.028 0.972 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.564 -1.935 18.962 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.219 1.219 16 N -0.371 5.371 17 C 0.310 3.690 18 O -0.395 6.395 19 C -0.006 4.006 20 H 0.088 0.912 21 C -0.082 4.082 22 C -0.100 4.100 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.130 4.130 27 N -0.244 5.244 28 C -0.125 4.125 29 C -0.134 4.134 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.233 0.767 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.091 0.909 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -19.119 -0.838 18.959 26.938 hybrid contribution 1.618 -1.351 -0.793 2.252 sum -17.501 -2.189 18.166 25.319 Atomic orbital electron populations 1.22159 0.95449 1.01975 1.02361 1.21033 0.93620 0.97709 0.83744 0.89339 1.21851 0.96836 1.00787 0.96642 1.21724 0.93671 1.01422 0.99446 1.20648 0.86164 0.96425 0.94238 1.42391 1.00223 1.66186 1.29078 1.19290 0.89447 1.26933 1.01285 0.91164 1.24757 0.96466 1.01275 0.98686 1.69673 1.07120 1.47079 1.34411 0.86112 0.79894 0.78505 0.81678 1.20554 1.21842 1.21869 1.46082 1.67365 1.14086 1.09534 1.20110 0.77908 0.87216 0.83722 1.90681 1.48854 1.15460 1.84462 1.20496 0.95811 0.92943 0.91344 0.91236 1.19378 0.96410 0.93185 0.99223 1.21137 0.92889 1.00865 0.95144 1.21205 0.98412 0.94336 1.00421 1.21199 0.98931 0.94849 0.98515 1.21082 0.95019 0.99921 0.97962 1.21056 0.98746 0.93194 0.99960 1.61737 1.36826 1.20511 1.05311 1.22462 0.98978 0.98846 0.92262 1.22603 0.92287 0.97007 1.01506 0.92320 0.91602 0.92590 0.91447 0.90243 0.91955 0.92198 0.96587 0.96477 0.78369 0.93581 0.76689 0.84801 0.86029 0.86188 0.85916 0.85934 0.95392 0.90881 0.91032 0.89485 0.90931 0.95506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.66 2.57 -67.93 -0.17 1.48 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 4 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 5 C -0.12 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.05 6.26 -4.04 -0.03 3.03 16 7 N -0.73 -18.95 5.60 -59.91 -0.34 -19.29 16 8 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 9 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 12 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 N -0.72 -8.06 4.53 -53.81 -0.24 -8.30 16 17 C 0.53 6.72 6.16 -10.98 -0.07 6.65 16 18 O -0.52 -8.27 14.37 5.55 0.08 -8.19 16 19 C 0.11 1.16 2.08 -70.02 -0.15 1.01 16 20 H 0.07 0.71 8.00 -51.93 -0.42 0.30 16 21 C -0.08 -0.80 3.73 -104.62 -0.39 -1.19 16 22 C -0.08 -0.82 8.41 -39.58 -0.33 -1.16 16 23 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 25 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 26 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 27 N -0.52 -5.82 3.93 -246.01 -0.97 -6.79 16 28 C 0.02 0.20 9.26 60.06 0.56 0.76 16 29 C 0.01 0.16 9.19 60.06 0.55 0.71 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.95 7.75 -51.93 -0.40 0.54 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.40 7.67 -40.82 -0.31 10.08 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 42 H 0.13 1.48 7.71 -52.49 -0.40 1.08 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 46 H 0.12 0.88 8.04 -52.49 -0.42 0.46 16 47 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.63 6.36 -51.93 -0.33 0.30 16 50 H 0.09 1.21 5.68 -51.93 -0.29 0.91 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 420.18 15.07 6.33 6.33 Total: -1.00 -33.26 420.18 -10.41 -43.67 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -9.22 Total: 9.53 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.76 Total: -6.65 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.82 Total: -62.24 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.26 -10.41 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951450.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.269 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds