Wall clock time and date at job start Tue Mar 31 2020 17:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.52999 * 109.47283 * 175.00170 * 4 2 1 6 6 C 1.53001 * 109.46946 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46786 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99823 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.38815 * 120.00354 * 180.02562 * 8 7 6 11 11 N 1.31617 * 119.99659 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00512 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46930 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47164 * 119.99762 * 12 10 8 15 15 H 1.48492 * 109.47270 * 240.00109 * 12 10 8 16 16 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 17 17 C 1.34777 * 120.00199 * 275.00460 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 2 20 20 H 1.08995 * 109.47357 * 39.71838 * 19 17 16 21 21 C 1.50698 * 109.46895 * 279.72002 * 19 17 16 22 22 C 1.38233 * 120.00333 * 279.72991 * 21 19 17 23 23 C 1.38239 * 119.99988 * 179.81122 * 22 21 19 24 24 C 1.38231 * 120.00045 * 0.39446 * 23 22 21 25 25 C 1.38233 * 120.00049 * 359.85978 * 24 23 22 26 26 C 1.38233 * 119.99962 * 359.94802 * 25 24 23 27 27 N 1.46895 * 109.46992 * 159.72213 * 19 17 16 28 28 C 1.46899 * 110.99838 * 179.97438 * 27 19 17 29 29 C 1.46900 * 111.00286 * 303.95300 * 27 19 17 30 30 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 31 31 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 32 32 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 34 34 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 35 35 H 1.08997 * 109.47141 * 299.99510 * 5 4 2 36 36 H 1.08998 * 109.47192 * 59.99829 * 5 4 2 37 37 H 1.08997 * 109.47150 * 299.99932 * 6 5 4 38 38 H 1.08998 * 109.46966 * 60.00118 * 6 5 4 39 39 H 0.96999 * 120.00227 * 0.02562 * 7 6 5 40 40 H 0.97001 * 120.00081 * 179.97438 * 11 10 8 41 41 H 0.97000 * 119.99484 * 94.99557 * 16 2 1 42 42 H 1.08000 * 119.99608 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.99627 * 180.22791 * 23 22 21 44 44 H 1.07999 * 119.99833 * 179.83059 * 24 23 22 45 45 H 1.08004 * 120.00012 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00026 * 179.97438 * 26 25 24 47 47 H 1.09003 * 109.47509 * 63.95367 * 28 27 19 48 48 H 1.09003 * 109.46933 * 183.95311 * 28 27 19 49 49 H 1.09001 * 109.47152 * 303.95169 * 28 27 19 50 50 H 1.09001 * 109.47229 * 56.04063 * 29 27 19 51 51 H 1.08998 * 109.47412 * 176.04905 * 29 27 19 52 52 H 1.09001 * 109.46861 * 296.04889 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 7 5.5348 -1.2310 -2.6246 8 6 6.2187 -1.8060 -3.6624 9 1 5.6817 -2.3357 -4.4354 10 6 7.6021 -1.7081 -3.7209 11 7 8.2566 -1.0630 -2.7786 12 14 8.5350 -2.4918 -5.1369 13 1 7.5746 -3.1521 -6.0570 14 1 9.2863 -1.4445 -5.8745 15 1 9.4855 -3.5010 -4.6051 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8589 1.1586 2.4115 19 6 2.6553 -0.7271 3.5861 20 1 3.4603 -1.4068 3.3067 21 6 1.5319 -1.5106 4.2147 22 6 0.6059 -0.8695 5.0161 23 6 -0.4269 -1.5876 5.5895 24 6 -0.5289 -2.9482 5.3681 25 6 0.4001 -3.5903 4.5709 26 6 1.4305 -2.8716 3.9943 27 7 3.1607 0.2616 4.5478 28 6 3.6650 -0.3947 5.7614 29 6 4.1948 1.1082 3.9381 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3573 36 1 3.9994 -1.0728 -0.4260 37 1 3.7865 -2.3851 -2.5186 38 1 3.6402 -0.8757 -3.4505 39 1 6.0172 -0.7556 -1.9302 40 1 9.2234 -0.9949 -2.8193 41 1 2.2490 -1.6317 1.1526 42 1 0.6878 0.1930 5.1921 43 1 -1.1524 -1.0859 6.2127 44 1 -1.3341 -3.5096 5.8183 45 1 0.3207 -4.6535 4.3983 46 1 2.1566 -3.3733 3.3718 47 1 4.5221 -1.0186 5.5078 48 1 3.9681 0.3625 6.4846 49 1 2.8791 -1.0149 6.1925 50 1 3.7946 1.5820 3.0417 51 1 4.5016 1.8757 4.6487 52 1 5.0556 0.4950 3.6714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506951450.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:37 Heat of formation + Delta-G solvation = -20.357578 kcal Electronic energy + Delta-G solvation = -29073.016499 eV Core-core repulsion = 25264.657662 eV Total energy + Delta-G solvation = -3808.358837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60508 -39.89009 -38.32652 -37.40104 -36.44025 -34.24613 -33.20761 -32.17610 -31.75724 -30.85138 -28.75600 -28.09574 -27.23490 -24.90525 -23.98920 -23.34046 -23.08415 -22.34244 -21.66013 -21.04974 -19.14039 -18.42310 -17.88948 -17.47028 -16.73409 -16.65490 -16.51482 -15.87141 -15.69029 -15.59643 -15.39454 -15.29355 -15.14030 -15.01431 -14.51262 -14.25916 -14.08575 -13.91839 -13.67722 -13.44537 -13.29751 -13.23499 -13.18585 -13.03085 -12.85010 -12.81545 -12.56713 -12.39317 -12.20542 -12.05860 -11.94496 -11.89329 -11.87095 -11.71555 -11.50322 -10.95834 -10.93580 -10.06219 -9.79837 -9.62106 -9.42045 -9.01844 -7.97084 -5.26363 0.34901 0.52664 1.46272 1.47414 1.57605 1.59896 2.05854 2.54690 2.76908 3.06072 3.36853 3.59275 3.64639 3.81583 3.91366 3.99366 4.09597 4.13572 4.20500 4.27219 4.29931 4.33444 4.38570 4.39779 4.57894 4.59029 4.63675 4.66109 4.67376 4.73920 4.81166 4.85690 4.90700 4.96591 4.98381 5.01466 5.04821 5.11225 5.19469 5.30075 5.36891 5.41890 5.49522 5.56076 5.57950 5.60065 5.65000 5.86079 5.96992 6.11103 6.25629 6.54913 7.23996 7.31104 8.08144 8.30198 9.26917 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.002459 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.209357 B =11383.946965 C =11830.723506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.971 5.971 12 Si 0.975 3.025 13 H -0.264 1.264 14 H -0.294 1.294 15 H -0.292 1.292 16 N -0.712 5.712 17 C 0.523 3.477 18 O -0.557 6.557 19 C 0.110 3.890 20 H 0.076 0.924 21 C -0.091 4.091 22 C -0.097 4.097 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.116 4.116 27 N -0.532 5.532 28 C 0.027 3.973 29 C 0.018 3.982 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.409 0.591 42 H 0.115 0.885 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.136 0.864 47 H 0.031 0.969 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.082 0.918 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.071 -4.174 18.802 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.149 4.149 6 C 0.024 3.976 7 N -0.393 5.393 8 C -0.377 4.377 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.622 5.622 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.221 1.221 15 H -0.219 1.219 16 N -0.364 5.364 17 C 0.309 3.691 18 O -0.435 6.435 19 C -0.002 4.002 20 H 0.094 0.906 21 C -0.092 4.092 22 C -0.116 4.116 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.134 4.134 27 N -0.256 5.256 28 C -0.121 4.121 29 C -0.129 4.129 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.245 0.755 42 H 0.133 0.867 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.154 0.846 47 H 0.049 0.951 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.101 0.899 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -20.673 -3.116 18.784 28.106 hybrid contribution 2.006 -0.657 -0.718 2.229 sum -18.668 -3.772 18.066 26.250 Atomic orbital electron populations 1.22071 0.93990 1.02846 1.02145 1.20947 0.94629 0.96478 0.83751 0.91761 1.21746 0.93603 1.02216 0.97113 1.21577 0.96411 0.99673 0.97287 1.20854 0.83134 0.97414 0.96182 1.42664 1.02566 1.65861 1.28227 1.19708 0.89998 1.26206 1.01759 0.90487 1.25625 0.97551 1.02486 1.01460 1.69832 1.07044 1.48900 1.36473 0.85044 0.78469 0.77364 0.78726 1.18840 1.22098 1.21874 1.46049 1.66758 1.14494 1.09089 1.20496 0.77270 0.86825 0.84516 1.90659 1.50637 1.17124 1.85113 1.20479 0.96380 0.92734 0.90622 0.90636 1.19327 0.96234 0.93759 0.99843 1.21073 0.94025 1.00192 0.96295 1.21411 0.98157 0.94953 1.00355 1.21518 0.99377 0.94553 0.98009 1.21401 0.94393 1.01030 0.97254 1.21249 0.99391 0.92609 1.00164 1.61725 1.36783 1.21136 1.05957 1.22464 0.99067 0.99071 0.91486 1.22502 0.92234 0.97376 1.00831 0.94100 0.90276 0.91086 0.89389 0.89072 0.93602 0.92488 0.95585 0.96246 0.79725 0.94012 0.75514 0.86701 0.84625 0.83821 0.83706 0.84616 0.95090 0.89989 0.90733 0.92027 0.89894 0.95530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.48 71.98 0.68 -2.25 16 2 C 0.15 3.28 2.57 44.99 0.12 3.40 16 3 H 0.06 1.79 7.58 -2.39 -0.02 1.77 16 4 C -0.11 -2.35 4.75 30.59 0.15 -2.21 16 5 C -0.11 -3.42 5.22 30.59 0.16 -3.26 16 6 C 0.15 5.85 6.26 86.38 0.54 6.39 16 7 N -0.75 -38.79 5.60 -343.45 -1.92 -40.71 16 8 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 9 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 10 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 11 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 12 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 14 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 15 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 16 N -0.71 -15.64 4.53 -442.54 -2.00 -17.65 16 17 C 0.52 13.68 6.16 87.66 0.54 14.22 16 18 O -0.56 -18.66 14.37 -3.04 -0.04 -18.71 16 19 C 0.11 2.41 2.08 43.42 0.09 2.50 16 20 H 0.08 1.53 8.00 -2.39 -0.02 1.51 16 21 C -0.09 -1.75 3.73 -19.87 -0.07 -1.82 16 22 C -0.10 -1.94 8.41 22.27 0.19 -1.76 16 23 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 25 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 26 C -0.12 -1.79 9.67 22.27 0.22 -1.57 16 27 N -0.53 -12.19 3.93 -932.22 -3.66 -15.86 16 28 C 0.03 0.48 9.26 127.69 1.18 1.66 16 29 C 0.02 0.45 9.19 127.69 1.17 1.62 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.59 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.37 20.57 7.67 -92.71 -0.71 19.86 16 40 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.41 7.28 8.60 -92.71 -0.80 6.48 16 42 H 0.11 2.68 7.71 -2.91 -0.02 2.66 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 46 H 0.14 1.66 8.04 -2.91 -0.02 1.64 16 47 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.29 6.36 -2.39 -0.02 1.27 16 50 H 0.06 1.83 5.68 -2.39 -0.01 1.82 16 51 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.03 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -72.37 420.18 1.00 -71.37 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.62 Total: 37.95 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 6.94 Total: -4.72 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -7.31 Total: -134.22 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.04 Total: -18.71 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -72.37 1.00 -71.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951450.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.012 kcal (2) G-P(sol) polarization free energy of solvation -72.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds