Wall clock time and date at job start Tue Mar 31 2020 18:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46892 * 109.47045 * 2 1 4 4 C 1.46900 * 111.00172 * 201.05391 * 3 2 1 5 5 C 1.46900 * 111.00192 * 77.10236 * 3 2 1 6 6 H 1.09002 * 109.47097 * 50.09827 * 5 3 2 7 7 C 1.50695 * 109.47587 * 170.10679 * 5 3 2 8 8 O 1.21288 * 120.00107 * 30.50930 * 7 5 3 9 9 N 1.34776 * 120.00323 * 210.50889 * 7 5 3 10 10 C 1.46496 * 120.00175 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47110 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46889 * 54.99446 * 12 11 10 14 14 C 1.52999 * 109.46956 * 174.99544 * 12 11 10 15 15 N 1.46496 * 109.47134 * 294.99545 * 12 11 10 16 16 C 1.36935 * 119.99856 * 154.99508 * 15 12 11 17 17 H 1.08004 * 120.00140 * 0.02562 * 16 15 12 18 18 C 1.38812 * 120.00041 * 180.02562 * 16 15 12 19 19 N 1.31618 * 120.00095 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99972 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47217 * 89.99947 * 20 18 16 22 22 H 1.48503 * 109.47044 * 210.00184 * 20 18 16 23 23 H 1.48502 * 109.47210 * 329.99844 * 20 18 16 24 24 C 1.50700 * 109.46880 * 290.10704 * 5 3 2 25 25 C 1.38231 * 120.00329 * 131.55703 * 24 5 3 26 26 C 1.38233 * 120.00231 * 179.97438 * 25 24 5 27 27 C 1.38237 * 120.00141 * 359.95912 * 26 25 24 28 28 C 1.38230 * 119.99857 * 359.97438 * 27 26 25 29 29 C 1.38237 * 119.99914 * 0.07907 * 28 27 26 30 30 H 1.09001 * 109.47002 * 50.17829 * 1 2 3 31 31 H 1.08992 * 109.47074 * 170.18187 * 1 2 3 32 32 H 1.09002 * 109.46681 * 290.18222 * 1 2 3 33 33 H 1.09002 * 109.46455 * 240.00168 * 2 1 3 34 34 H 1.08997 * 109.47110 * 120.00653 * 2 1 3 35 35 H 1.09007 * 109.47230 * 289.55622 * 4 3 2 36 36 H 1.09003 * 109.46920 * 49.55203 * 4 3 2 37 37 H 1.08997 * 109.47680 * 169.55402 * 4 3 2 38 38 H 0.97002 * 119.99690 * 0.02562 * 9 7 5 39 39 H 1.09005 * 109.47338 * 299.99751 * 10 9 7 40 40 H 1.08997 * 109.47444 * 60.00548 * 10 9 7 41 41 H 1.09006 * 109.46884 * 299.99449 * 11 10 9 42 42 H 1.08995 * 109.47429 * 60.00031 * 11 10 9 43 43 H 1.08999 * 109.47675 * 299.99918 * 14 12 11 44 44 H 1.08999 * 109.47402 * 60.00216 * 14 12 11 45 45 H 1.09000 * 109.46838 * 179.97438 * 14 12 11 46 46 H 0.96999 * 120.00019 * 335.00251 * 15 12 11 47 47 H 0.97006 * 119.99812 * 179.97438 * 19 18 16 48 48 H 1.08008 * 120.00062 * 359.97438 * 25 24 5 49 49 H 1.08004 * 119.99676 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.99862 * 179.72361 * 27 26 25 51 51 H 1.07998 * 120.00205 * 179.97438 * 28 27 26 52 52 H 1.08004 * 119.99590 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4018 1.4547 -0.4927 5 6 1.9066 1.9833 1.3368 6 1 2.3483 1.3125 2.0737 7 6 2.6333 3.3033 1.3596 8 8 2.7066 3.9727 0.3508 9 7 3.2018 3.7400 2.5008 10 6 3.9087 5.0229 2.5228 11 6 4.4560 5.2797 3.9283 12 6 5.1950 6.6193 3.9511 13 1 4.5315 7.4062 3.5925 14 6 5.6341 6.9352 5.3823 15 7 6.3736 6.5416 3.0845 16 6 6.8943 7.6818 2.5332 17 1 6.4363 8.6383 2.7375 18 6 8.0108 7.6082 1.7116 19 7 8.5116 8.7041 1.1821 20 14 8.8025 5.9537 1.3577 21 1 8.1812 5.3561 0.1486 22 1 10.2574 6.1406 1.1256 23 1 8.5986 5.0490 2.5175 24 6 0.4529 2.2046 1.6667 25 6 -0.0502 1.7899 2.8857 26 6 -1.3835 1.9933 3.1885 27 6 -2.2137 2.6122 2.2726 28 6 -1.7104 3.0281 1.0542 29 6 -0.3773 2.8236 0.7510 30 1 -0.3633 0.6581 -0.7893 31 1 -0.3633 -1.0125 -0.1752 32 1 -0.3633 0.3546 0.9646 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0732 1.0148 0.2450 36 1 3.4816 0.9044 -1.4302 37 1 3.6765 2.4964 -0.6583 38 1 3.1434 3.2045 3.3075 39 1 4.7341 4.9952 1.8113 40 1 3.2199 5.8222 2.2492 41 1 3.6309 5.3073 4.6401 42 1 5.1450 4.4805 4.2016 43 1 4.7572 6.9930 6.0271 44 1 6.2975 6.1482 5.7409 45 1 6.1609 7.8893 5.3984 46 1 6.7851 5.6826 2.9013 47 1 9.2920 8.6527 0.6083 48 1 0.5986 1.3070 3.6015 49 1 -1.7766 1.6689 4.1407 50 1 -3.2564 2.7670 2.5075 51 1 -2.3591 3.5112 0.3385 52 1 0.0158 3.1483 -0.2011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567235489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:40 Heat of formation + Delta-G solvation = 12.894960 kcal Electronic energy + Delta-G solvation = -29483.202729 eV Core-core repulsion = 25676.285830 eV Total energy + Delta-G solvation = -3806.916899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77139 -38.99134 -37.33756 -36.57668 -34.48630 -32.47687 -32.05035 -31.21421 -31.03586 -29.84903 -28.55886 -27.17350 -24.85660 -23.68365 -22.93691 -22.66464 -22.08326 -21.37814 -20.35982 -19.69108 -17.73485 -17.35257 -17.12954 -16.29032 -15.92271 -15.41397 -15.23747 -14.99465 -14.74437 -14.65882 -14.26205 -13.97530 -13.68139 -13.58619 -13.51099 -13.33321 -13.08316 -12.82894 -12.55134 -12.52492 -12.30261 -12.21739 -11.95901 -11.83548 -11.59970 -11.33500 -11.26158 -11.17014 -11.04218 -11.01034 -10.79778 -10.64674 -10.40801 -10.06905 -9.79185 -9.56514 -9.09208 -8.96776 -8.89933 -8.77857 -8.57733 -7.26087 -5.74661 -3.10239 1.06164 1.23230 2.61773 3.02469 3.38064 3.41471 3.46807 3.48783 3.86947 4.43382 4.60600 4.60995 4.70036 4.74712 4.80150 4.88666 4.99578 5.02103 5.13698 5.18123 5.22935 5.29687 5.35881 5.40860 5.43879 5.46782 5.59138 5.60303 5.62236 5.69957 5.78685 5.88084 5.94751 6.00710 6.06534 6.08567 6.22569 6.22983 6.25360 6.34904 6.35871 6.37414 6.47332 6.56005 6.69662 6.77624 6.79912 6.82626 6.97142 7.53062 8.01257 8.26446 8.44277 9.22404 9.94942 10.14054 11.43873 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.002957 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.315623 B = 9465.189929 C =10588.268763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.053 3.947 3 N -0.516 5.516 4 C 0.009 3.991 5 C 0.110 3.890 6 H 0.064 0.936 7 C 0.516 3.484 8 O -0.513 6.513 9 N -0.727 5.727 10 C 0.122 3.878 11 C -0.136 4.136 12 C 0.180 3.820 13 H 0.058 0.942 14 C -0.164 4.164 15 N -0.748 5.748 16 C -0.241 4.241 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.882 3.118 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.279 1.279 24 C -0.071 4.071 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.125 4.125 29 C -0.075 4.075 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.395 0.605 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.059 0.941 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 -20.359 4.362 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.075 4.075 3 N -0.241 5.241 4 C -0.138 4.138 5 C -0.002 4.002 6 H 0.082 0.918 7 C 0.300 3.700 8 O -0.387 6.387 9 N -0.379 5.379 10 C -0.001 4.001 11 C -0.174 4.174 12 C 0.070 3.930 13 H 0.076 0.924 14 C -0.224 4.224 15 N -0.391 5.391 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.582 5.582 20 Si 0.712 3.288 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.072 4.072 25 C -0.134 4.134 26 C -0.142 4.142 27 C -0.135 4.135 28 C -0.143 4.143 29 C -0.093 4.093 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.228 0.772 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.192 0.808 47 H 0.069 0.931 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.071 -19.331 3.198 28.773 hybrid contribution 1.281 -1.905 0.731 2.410 sum -19.790 -21.237 3.929 29.293 Atomic orbital electron populations 1.22112 0.94663 1.01205 1.03346 1.22161 0.96664 0.87836 1.00810 1.61841 1.22653 1.18161 1.21432 1.22714 0.86815 1.04919 0.99390 1.20543 0.93293 0.94374 0.91953 0.91783 1.20153 0.78943 0.87236 0.83703 1.90723 1.58354 1.56832 1.32809 1.46137 1.56261 1.23464 1.12050 1.21458 0.96506 0.83618 0.98479 1.22109 0.99953 0.99990 0.95384 1.20120 0.88804 0.93692 0.90377 0.92352 1.22395 0.99913 1.02130 0.97956 1.42823 1.32356 1.06472 1.57482 1.19059 1.08678 0.87328 1.22053 0.89170 1.24653 0.98328 0.96306 0.99748 1.69697 1.25543 1.26015 1.36933 0.86595 0.79035 0.85016 0.78145 1.21003 1.21801 1.20492 1.19273 0.93264 0.99966 0.94692 1.20980 0.95856 1.00582 0.96031 1.21034 0.93591 1.00028 0.99540 1.21176 0.99724 0.98485 0.94160 1.21204 0.95641 1.00329 0.97093 1.21127 0.92867 0.95793 0.99546 0.91631 0.92979 0.91608 0.90673 0.94738 0.95916 0.91066 0.88730 0.77166 0.90290 0.91302 0.91401 0.91804 0.94218 0.93677 0.92218 0.80755 0.93091 0.86263 0.86090 0.86236 0.86013 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.53 37.16 0.32 -1.00 16 2 C 0.05 0.47 5.71 -3.83 -0.02 0.45 16 3 N -0.52 -5.81 4.06 -237.69 -0.96 -6.78 16 4 C 0.01 0.11 8.86 60.06 0.53 0.64 16 5 C 0.11 1.21 2.09 -70.02 -0.15 1.06 16 6 H 0.06 0.59 7.63 -51.93 -0.40 0.19 16 7 C 0.52 7.27 5.84 -10.99 -0.06 7.21 16 8 O -0.51 -9.36 14.65 5.55 0.08 -9.28 16 9 N -0.73 -9.19 5.56 -60.29 -0.33 -9.52 16 10 C 0.12 1.89 5.56 -4.04 -0.02 1.87 16 11 C -0.14 -1.91 4.87 -26.73 -0.13 -2.04 16 12 C 0.18 3.27 2.89 -67.93 -0.20 3.08 16 13 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 14 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 15 N -0.75 -17.20 4.38 -53.43 -0.23 -17.43 16 16 C -0.24 -6.75 10.41 -15.06 -0.16 -6.90 16 17 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 20 Si 0.88 22.35 27.74 -169.99 -4.71 17.63 16 21 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 24 C -0.07 -0.73 2.56 -104.62 -0.27 -1.00 16 25 C -0.12 -0.99 8.81 -39.59 -0.35 -1.33 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 28 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 29 C -0.08 -0.83 7.30 -39.58 -0.29 -1.12 16 30 H 0.06 0.62 7.64 -51.93 -0.40 0.22 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.59 4.74 -51.93 -0.25 0.34 16 33 H 0.07 0.61 7.70 -51.93 -0.40 0.21 16 34 H 0.03 0.28 7.79 -51.93 -0.40 -0.12 16 35 H 0.02 0.25 8.12 -51.92 -0.42 -0.17 16 36 H 0.07 0.73 7.81 -51.93 -0.41 0.33 16 37 H 0.09 1.42 5.72 -51.93 -0.30 1.13 16 38 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 39 H 0.08 1.49 7.75 -51.93 -0.40 1.09 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 47 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 48 H 0.12 0.78 7.98 -52.48 -0.42 0.36 16 49 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 50 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 52 H 0.13 1.70 7.98 -52.48 -0.42 1.28 16 LS Contribution 410.24 15.07 6.18 6.18 Total: -1.00 -33.49 410.24 -9.96 -43.45 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -9.02 Total: 10.25 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.73 Total: -5.69 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.76 Total: -62.55 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.49 -9.96 -43.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567235489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.349 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds