Wall clock time and date at job start Tue Mar 31 2020 18:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46892 * 109.47045 * 2 1 4 4 C 1.46900 * 111.00172 * 201.05391 * 3 2 1 5 5 C 1.46900 * 111.00192 * 77.10236 * 3 2 1 6 6 H 1.09002 * 109.47097 * 50.09827 * 5 3 2 7 7 C 1.50695 * 109.47587 * 170.10679 * 5 3 2 8 8 O 1.21288 * 120.00107 * 30.50930 * 7 5 3 9 9 N 1.34776 * 120.00323 * 210.50889 * 7 5 3 10 10 C 1.46496 * 120.00175 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47001 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47110 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46889 * 54.99446 * 12 11 10 14 14 C 1.52999 * 109.46956 * 174.99544 * 12 11 10 15 15 N 1.46496 * 109.47134 * 294.99545 * 12 11 10 16 16 C 1.36935 * 119.99856 * 154.99508 * 15 12 11 17 17 H 1.08004 * 120.00140 * 0.02562 * 16 15 12 18 18 C 1.38812 * 120.00041 * 180.02562 * 16 15 12 19 19 N 1.31618 * 120.00095 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99972 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47217 * 89.99947 * 20 18 16 22 22 H 1.48503 * 109.47044 * 210.00184 * 20 18 16 23 23 H 1.48502 * 109.47210 * 329.99844 * 20 18 16 24 24 C 1.50700 * 109.46880 * 290.10704 * 5 3 2 25 25 C 1.38231 * 120.00329 * 131.55703 * 24 5 3 26 26 C 1.38233 * 120.00231 * 179.97438 * 25 24 5 27 27 C 1.38237 * 120.00141 * 359.95912 * 26 25 24 28 28 C 1.38230 * 119.99857 * 359.97438 * 27 26 25 29 29 C 1.38237 * 119.99914 * 0.07907 * 28 27 26 30 30 H 1.09001 * 109.47002 * 50.17829 * 1 2 3 31 31 H 1.08992 * 109.47074 * 170.18187 * 1 2 3 32 32 H 1.09002 * 109.46681 * 290.18222 * 1 2 3 33 33 H 1.09002 * 109.46455 * 240.00168 * 2 1 3 34 34 H 1.08997 * 109.47110 * 120.00653 * 2 1 3 35 35 H 1.09007 * 109.47230 * 289.55622 * 4 3 2 36 36 H 1.09003 * 109.46920 * 49.55203 * 4 3 2 37 37 H 1.08997 * 109.47680 * 169.55402 * 4 3 2 38 38 H 0.97002 * 119.99690 * 0.02562 * 9 7 5 39 39 H 1.09005 * 109.47338 * 299.99751 * 10 9 7 40 40 H 1.08997 * 109.47444 * 60.00548 * 10 9 7 41 41 H 1.09006 * 109.46884 * 299.99449 * 11 10 9 42 42 H 1.08995 * 109.47429 * 60.00031 * 11 10 9 43 43 H 1.08999 * 109.47675 * 299.99918 * 14 12 11 44 44 H 1.08999 * 109.47402 * 60.00216 * 14 12 11 45 45 H 1.09000 * 109.46838 * 179.97438 * 14 12 11 46 46 H 0.96999 * 120.00019 * 335.00251 * 15 12 11 47 47 H 0.97006 * 119.99812 * 179.97438 * 19 18 16 48 48 H 1.08008 * 120.00062 * 359.97438 * 25 24 5 49 49 H 1.08004 * 119.99676 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.99862 * 179.72361 * 27 26 25 51 51 H 1.07998 * 120.00205 * 179.97438 * 28 27 26 52 52 H 1.08004 * 119.99590 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4018 1.4547 -0.4927 5 6 1.9066 1.9833 1.3368 6 1 2.3483 1.3125 2.0737 7 6 2.6333 3.3033 1.3596 8 8 2.7066 3.9727 0.3508 9 7 3.2018 3.7400 2.5008 10 6 3.9087 5.0229 2.5228 11 6 4.4560 5.2797 3.9283 12 6 5.1950 6.6193 3.9511 13 1 4.5315 7.4062 3.5925 14 6 5.6341 6.9352 5.3823 15 7 6.3736 6.5416 3.0845 16 6 6.8943 7.6818 2.5332 17 1 6.4363 8.6383 2.7375 18 6 8.0108 7.6082 1.7116 19 7 8.5116 8.7041 1.1821 20 14 8.8025 5.9537 1.3577 21 1 8.1812 5.3561 0.1486 22 1 10.2574 6.1406 1.1256 23 1 8.5986 5.0490 2.5175 24 6 0.4529 2.2046 1.6667 25 6 -0.0502 1.7899 2.8857 26 6 -1.3835 1.9933 3.1885 27 6 -2.2137 2.6122 2.2726 28 6 -1.7104 3.0281 1.0542 29 6 -0.3773 2.8236 0.7510 30 1 -0.3633 0.6581 -0.7893 31 1 -0.3633 -1.0125 -0.1752 32 1 -0.3633 0.3546 0.9646 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0732 1.0148 0.2450 36 1 3.4816 0.9044 -1.4302 37 1 3.6765 2.4964 -0.6583 38 1 3.1434 3.2045 3.3075 39 1 4.7341 4.9952 1.8113 40 1 3.2199 5.8222 2.2492 41 1 3.6309 5.3073 4.6401 42 1 5.1450 4.4805 4.2016 43 1 4.7572 6.9930 6.0271 44 1 6.2975 6.1482 5.7409 45 1 6.1609 7.8893 5.3984 46 1 6.7851 5.6826 2.9013 47 1 9.2920 8.6527 0.6083 48 1 0.5986 1.3070 3.6015 49 1 -1.7766 1.6689 4.1407 50 1 -3.2564 2.7670 2.5075 51 1 -2.3591 3.5112 0.3385 52 1 0.0158 3.1483 -0.2011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567235489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:39 Heat of formation + Delta-G solvation = -10.220492 kcal Electronic energy + Delta-G solvation = -29484.205090 eV Core-core repulsion = 25676.285830 eV Total energy + Delta-G solvation = -3807.919260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68915 -39.88087 -38.45439 -37.81031 -35.88884 -34.23463 -33.03951 -31.96049 -31.70993 -31.58614 -29.86634 -28.06298 -25.88053 -25.40195 -24.00688 -23.60075 -22.79015 -22.36941 -21.70202 -20.89156 -19.66662 -18.34803 -17.97071 -17.32584 -17.01491 -16.65884 -16.16110 -16.09639 -15.88774 -15.73724 -15.43345 -15.21740 -15.01682 -14.61116 -14.49174 -14.30937 -14.25779 -14.07633 -13.74351 -13.64527 -13.58258 -13.33051 -13.10951 -12.93805 -12.65799 -12.57947 -12.39191 -12.26530 -12.18958 -12.05822 -12.02594 -11.87465 -11.78888 -11.72694 -11.64193 -11.01875 -10.90339 -10.12242 -9.75831 -9.51552 -9.37643 -9.30297 -8.02135 -5.33884 0.37687 0.56273 1.32927 1.38796 1.44276 1.55157 2.01575 2.47354 2.74728 3.07998 3.30207 3.61608 3.63785 3.78119 3.88344 3.96043 4.03795 4.15961 4.21585 4.24200 4.27550 4.28292 4.35245 4.43410 4.56528 4.63565 4.65923 4.67143 4.73621 4.76437 4.82540 4.93343 4.99193 5.01339 5.04932 5.07403 5.12247 5.16460 5.21640 5.35192 5.41333 5.42233 5.57846 5.58554 5.65485 5.68305 5.79647 5.89593 6.06216 6.13808 6.22620 6.54903 7.09613 7.23350 7.86623 8.04113 9.20050 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.002957 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.315623 B = 9465.189929 C =10588.268763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.015 3.985 5 C 0.118 3.882 6 H 0.092 0.908 7 C 0.511 3.489 8 O -0.564 6.564 9 N -0.712 5.712 10 C 0.130 3.870 11 C -0.117 4.117 12 C 0.168 3.832 13 H 0.040 0.960 14 C -0.155 4.155 15 N -0.750 5.750 16 C -0.221 4.221 17 H 0.056 0.944 18 C -0.068 4.068 19 N -0.987 5.987 20 Si 0.950 3.050 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.246 1.246 24 C -0.081 4.081 25 C -0.113 4.113 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.136 4.136 29 C -0.095 4.095 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.416 0.584 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.028 0.972 46 H 0.364 0.636 47 H 0.256 0.744 48 H 0.147 0.853 49 H 0.149 0.851 50 H 0.142 0.858 51 H 0.127 0.873 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.594 -24.280 7.566 34.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.073 4.073 3 N -0.259 5.259 4 C -0.133 4.133 5 C 0.007 3.993 6 H 0.109 0.891 7 C 0.297 3.703 8 O -0.441 6.441 9 N -0.365 5.365 10 C 0.006 3.994 11 C -0.156 4.156 12 C 0.060 3.940 13 H 0.058 0.942 14 C -0.214 4.214 15 N -0.394 5.394 16 C -0.352 4.352 17 H 0.074 0.926 18 C -0.258 4.258 19 N -0.638 5.638 20 Si 0.778 3.222 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.171 1.171 24 C -0.082 4.082 25 C -0.131 4.131 26 C -0.140 4.140 27 C -0.136 4.136 28 C -0.154 4.154 29 C -0.113 4.113 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.164 0.836 49 H 0.167 0.833 50 H 0.159 0.841 51 H 0.145 0.855 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.808 -23.311 6.488 33.252 hybrid contribution 1.633 -0.603 -0.242 1.757 sum -21.175 -23.914 6.247 32.546 Atomic orbital electron populations 1.22042 0.94392 1.01638 1.02589 1.22215 0.96769 0.86474 1.01829 1.61791 1.22158 1.19862 1.22081 1.22565 0.87630 1.02663 1.00436 1.20523 0.93610 0.92621 0.92547 0.89055 1.20846 0.78326 0.88074 0.83066 1.90709 1.60135 1.58565 1.34734 1.45908 1.55268 1.22540 1.12738 1.21140 0.95010 0.84498 0.98711 1.21955 1.00974 0.97642 0.94985 1.20421 0.87176 0.95973 0.90410 0.94172 1.22246 1.01394 1.00730 0.97052 1.42841 1.33635 1.04892 1.58080 1.19026 1.07674 0.87779 1.20753 0.92636 1.25465 0.99657 1.00182 1.00545 1.69883 1.26524 1.28727 1.38703 0.85471 0.77263 0.80757 0.78669 1.21475 1.22298 1.17072 1.19253 0.92540 1.00857 0.95512 1.21265 0.96606 0.99878 0.95386 1.21409 0.93272 0.98929 1.00370 1.21481 1.00994 0.97687 0.93442 1.21344 0.95113 1.00753 0.98174 1.20979 0.93997 0.97402 0.98943 0.93403 0.91416 0.91796 0.90058 0.93205 0.94959 0.89933 0.92504 0.74708 0.94131 0.93469 0.87397 0.89896 0.90386 0.92655 0.95286 0.80321 0.93538 0.83577 0.83322 0.84066 0.85483 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.53 71.98 0.61 -1.68 16 2 C 0.05 0.86 5.71 86.31 0.49 1.35 16 3 N -0.53 -11.71 4.06 -905.93 -3.68 -15.39 16 4 C 0.01 0.35 8.86 127.69 1.13 1.48 16 5 C 0.12 2.42 2.09 43.42 0.09 2.51 16 6 H 0.09 1.34 7.63 -2.39 -0.02 1.32 16 7 C 0.51 14.28 5.84 87.66 0.51 14.79 16 8 O -0.56 -21.70 14.65 -3.05 -0.04 -21.74 16 9 N -0.71 -16.70 5.56 -463.06 -2.57 -19.27 16 10 C 0.13 3.96 5.56 86.38 0.48 4.44 16 11 C -0.12 -2.92 4.87 30.60 0.15 -2.77 16 12 C 0.17 5.90 2.89 44.99 0.13 6.03 16 13 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 14 C -0.15 -4.77 9.49 71.98 0.68 -4.08 16 15 N -0.75 -34.26 4.38 -322.94 -1.41 -35.67 16 16 C -0.22 -12.72 10.41 84.03 0.87 -11.85 16 17 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 19 N -0.99 -65.12 13.97 21.65 0.30 -64.81 16 20 Si 0.95 46.89 27.74 68.60 1.90 48.79 16 21 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 23 H -0.25 -10.70 6.52 99.48 0.65 -10.06 16 24 C -0.08 -1.52 2.56 -19.87 -0.05 -1.57 16 25 C -0.11 -1.50 8.81 22.27 0.20 -1.30 16 26 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 27 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 28 C -0.14 -2.45 10.05 22.27 0.22 -2.22 16 29 C -0.09 -2.10 7.30 22.27 0.16 -1.94 16 30 H 0.05 0.90 7.64 -2.39 -0.02 0.88 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.01 4.74 -2.39 -0.01 1.00 16 33 H 0.08 1.18 7.70 -2.39 -0.02 1.16 16 34 H 0.05 0.65 7.79 -2.39 -0.02 0.63 16 35 H 0.03 0.67 8.12 -2.38 -0.02 0.66 16 36 H 0.08 1.69 7.81 -2.39 -0.02 1.67 16 37 H 0.06 1.80 5.72 -2.39 -0.01 1.79 16 38 H 0.42 6.20 8.47 -92.71 -0.79 5.42 16 39 H 0.04 1.55 7.75 -2.38 -0.02 1.53 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 41 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.36 16.00 5.66 -92.71 -0.52 15.48 16 47 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 48 H 0.15 1.12 7.98 -2.91 -0.02 1.10 16 49 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 50 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 51 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 52 H 0.10 2.85 7.98 -2.91 -0.02 2.83 16 Total: -1.00 -78.95 410.24 0.63 -78.32 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.47 Total: 32.82 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.60 Total: -3.05 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -7.36 Total: -135.14 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.04 Total: -21.74 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.90 Total: 48.79 kcal Total: -78.95 0.63 -78.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567235489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.098 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds