Wall clock time and date at job start Tue Mar 31 2020 17:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47433 * 2 1 4 4 C 1.36445 * 124.84876 * 264.97985 * 3 2 1 5 5 C 1.34494 * 108.85183 * 180.02562 * 4 3 2 6 6 C 1.46683 * 106.33397 * 359.97438 * 5 4 3 7 7 C 1.47264 * 126.94115 * 180.02562 * 6 5 4 8 8 O 1.21629 * 119.99937 * 229.48090 * 7 6 5 9 9 N 1.34772 * 119.99905 * 49.47483 * 7 6 5 10 10 C 1.46923 * 120.63418 * 355.68689 * 9 7 6 11 11 C 1.53191 * 108.89712 * 126.29569 * 10 9 7 12 12 C 1.53356 * 109.14768 * 54.57916 * 11 10 9 13 13 C 1.53000 * 109.40751 * 178.68642 * 12 11 10 14 14 C 1.52998 * 109.46870 * 295.11747 * 13 12 11 15 15 N 1.46504 * 109.47171 * 180.02562 * 14 13 12 16 16 C 1.36937 * 119.99764 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00421 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99565 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00218 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47435 * 89.99486 * 20 18 16 22 22 H 1.48497 * 109.46917 * 209.99733 * 20 18 16 23 23 H 1.48499 * 109.46913 * 329.99246 * 20 18 16 24 24 C 1.53041 * 109.60728 * 298.71579 * 12 11 10 25 25 C 1.46931 * 120.62856 * 175.66443 * 9 7 6 26 26 C 1.34664 * 124.85122 * 85.30733 * 3 2 1 27 27 C 1.50697 * 125.79909 * 0.02562 * 26 3 2 28 28 H 1.08997 * 109.47258 * 299.99933 * 1 2 3 29 29 H 1.09001 * 109.46969 * 59.99653 * 1 2 3 30 30 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47258 * 240.00066 * 2 1 3 32 32 H 1.09002 * 109.46929 * 119.99792 * 2 1 3 33 33 H 1.08001 * 125.57518 * 0.03734 * 4 3 2 34 34 H 1.08009 * 126.82926 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.58737 * 246.15401 * 10 9 7 36 36 H 1.08997 * 109.58510 * 6.44008 * 10 9 7 37 37 H 1.08997 * 109.49881 * 174.65735 * 11 10 9 38 38 H 1.09001 * 109.49662 * 294.75797 * 11 10 9 39 39 H 1.09000 * 109.43181 * 58.75532 * 12 11 10 40 40 H 1.08996 * 109.47280 * 55.11921 * 13 12 11 41 41 H 1.09002 * 109.46702 * 175.12179 * 13 12 11 42 42 H 1.09009 * 109.47489 * 300.00302 * 14 13 12 43 43 H 1.09000 * 109.47033 * 60.00137 * 14 13 12 44 44 H 0.96997 * 120.00113 * 0.02562 * 15 14 13 45 45 H 0.97005 * 119.99899 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.49851 * 301.42336 * 24 12 11 47 47 H 1.08998 * 109.52462 * 181.34440 * 24 12 11 48 48 H 1.08997 * 109.58742 * 353.41896 * 25 9 7 49 49 H 1.08994 * 109.59123 * 113.70291 * 25 9 7 50 50 H 1.09003 * 109.47097 * 270.18863 * 27 26 3 51 51 H 1.08997 * 109.47733 * 30.18976 * 27 26 3 52 52 H 1.08999 * 109.47256 * 150.19030 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3707 2.0836 -1.1155 5 6 2.7717 3.3131 -0.7462 6 6 2.6533 3.3641 0.7150 7 6 2.9749 4.5043 1.5897 8 8 3.6782 4.3406 2.5684 9 7 2.4899 5.7293 1.3057 10 6 1.7180 5.9626 0.0776 11 6 0.3795 6.6090 0.4481 12 6 0.6431 7.8715 1.2777 13 6 -0.6889 8.5401 1.6235 14 6 -1.3626 9.0287 0.3397 15 7 -2.6379 9.6694 0.6707 16 6 -3.4230 10.1866 -0.3249 17 1 -3.1020 10.1227 -1.3540 18 6 -4.6311 10.7942 -0.0112 19 7 -5.0220 10.8726 1.2432 20 14 -5.7018 11.5005 -1.3691 21 1 -6.6379 10.4555 -1.8555 22 1 -6.4764 12.6518 -0.8404 23 1 -4.8420 11.9558 -2.4910 24 6 1.3746 7.4947 2.5682 25 6 2.7228 6.8567 2.2186 26 6 2.1897 2.1368 1.1014 27 6 1.9141 1.7047 2.5185 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3335 1.7129 -2.1292 34 1 3.1129 4.1053 -1.3963 35 1 2.2744 6.6276 -0.5830 36 1 1.5380 5.0133 -0.4268 37 1 -0.1610 6.8732 -0.4608 38 1 -0.2139 5.9067 1.0338 39 1 1.2575 8.5628 0.7008 40 1 -1.3376 7.8207 2.1231 41 1 -0.5091 9.3877 2.2847 42 1 -0.7139 9.7482 -0.1601 43 1 -1.5424 8.1810 -0.3216 44 1 -2.9261 9.7272 1.5951 45 1 -5.8664 11.2968 1.4624 46 1 0.7717 6.7842 3.1339 47 1 1.5401 8.3898 3.1678 48 1 3.2036 6.4970 3.1283 49 1 3.3631 7.5934 1.7337 50 1 0.8809 1.9386 2.7753 51 1 2.0767 0.6308 2.6092 52 1 2.5852 2.2322 3.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568091930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:14 Heat of formation + Delta-G solvation = -11.292511 kcal Electronic energy + Delta-G solvation = -28945.311201 eV Core-core repulsion = 25137.345455 eV Total energy + Delta-G solvation = -3807.965746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39825 -40.78427 -38.82465 -36.84196 -35.19038 -34.78415 -33.00525 -32.61213 -32.13271 -30.33983 -29.73301 -27.50475 -26.46755 -25.12065 -24.33465 -24.15475 -22.97118 -22.02350 -21.31531 -20.48498 -19.26015 -19.10769 -18.18568 -17.39039 -16.78621 -16.64888 -16.23339 -15.92460 -15.70525 -15.48361 -15.40186 -15.30922 -14.87611 -14.69744 -14.50794 -14.30398 -14.17116 -13.90481 -13.86802 -13.63557 -13.53335 -13.16241 -13.03478 -12.99855 -12.83346 -12.69166 -12.49360 -12.45181 -12.29354 -12.16135 -12.09880 -12.08533 -11.93668 -11.61773 -11.32875 -11.18587 -10.87906 -10.85822 -9.64846 -9.39362 -9.04893 -8.98606 -7.94862 -5.23955 0.94328 1.47369 1.49715 1.54801 1.58256 1.82478 2.13230 2.37130 2.56738 3.38773 3.69755 3.71919 3.81183 3.83072 3.85390 4.00903 4.09816 4.14540 4.18364 4.24850 4.34252 4.38159 4.42101 4.44739 4.57241 4.59958 4.62029 4.62736 4.65867 4.80020 4.81778 4.85733 4.89130 4.92167 4.98086 5.02775 5.07874 5.09276 5.11024 5.18488 5.24572 5.25846 5.30873 5.42406 5.49927 5.56926 5.66321 5.84703 6.17542 6.27971 6.41531 6.51333 7.25497 7.33261 8.10905 8.33254 9.29174 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.002366 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.572291 B =11829.901680 C =13045.837740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 N -0.437 5.437 4 C -0.004 4.004 5 C -0.185 4.185 6 C -0.260 4.260 7 C 0.590 3.410 8 O -0.593 6.593 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.125 4.125 12 C -0.073 4.073 13 C -0.108 4.108 14 C 0.152 3.848 15 N -0.751 5.751 16 C -0.245 4.245 17 H 0.077 0.923 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.976 3.024 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.268 1.268 24 C -0.119 4.119 25 C 0.113 3.887 26 C 0.079 3.921 27 C -0.092 4.092 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.199 0.801 34 H 0.155 0.845 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.019 0.981 43 H 0.026 0.974 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.090 0.910 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.938 -24.458 -4.230 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.029 4.029 3 N -0.113 5.113 4 C -0.131 4.131 5 C -0.209 4.209 6 C -0.270 4.270 7 C 0.381 3.619 8 O -0.475 6.475 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.163 4.163 12 C -0.092 4.092 13 C -0.146 4.146 14 C 0.026 3.974 15 N -0.393 5.393 16 C -0.377 4.377 17 H 0.095 0.905 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.192 1.192 24 C -0.158 4.158 25 C -0.009 4.009 26 C -0.038 4.038 27 C -0.149 4.149 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.216 0.784 34 H 0.173 0.827 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.044 0.956 44 H 0.203 0.797 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.109 0.891 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.156 -24.840 -3.949 31.020 hybrid contribution -1.021 0.872 0.030 1.343 sum 17.135 -23.968 -3.919 29.722 Atomic orbital electron populations 1.22147 0.93952 1.04046 1.02383 1.22188 0.95776 0.78775 1.06202 1.43937 1.49415 1.12926 1.05037 1.22210 1.05801 0.92599 0.92477 1.22123 1.08462 0.98666 0.91669 1.20100 1.17565 0.94483 0.94862 1.17869 0.78012 0.82589 0.83407 1.90696 1.40135 1.85127 1.31587 1.48073 1.53212 1.08477 1.23632 1.22048 0.91197 1.02777 0.85483 1.22021 0.97032 0.96518 1.00760 1.21065 0.95074 0.96629 0.96454 1.21622 0.96305 0.99590 0.97042 1.20878 0.85951 0.94468 0.96094 1.42674 1.20635 1.69648 1.06381 1.19678 0.99594 1.28712 0.89717 0.90510 1.25631 0.99932 1.03024 0.98579 1.69833 1.23306 1.51151 1.18072 0.85100 0.78629 0.77367 0.78455 1.21261 1.22182 1.19242 1.21883 0.95484 1.00966 0.97417 1.21613 0.97175 0.87854 0.94238 1.20270 1.02698 0.90452 0.90366 1.20459 1.02604 1.02806 0.89046 0.93253 0.92349 0.88677 0.86489 0.88253 0.78386 0.82726 0.89937 0.87767 0.90072 0.93014 0.89959 0.93164 0.92390 0.96277 0.95629 0.79692 0.94005 0.92812 0.89545 0.90443 0.90039 0.90501 0.89086 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 71.98 0.74 -0.48 16 2 C 0.09 0.62 6.46 86.38 0.56 1.18 16 3 N -0.44 -6.31 2.69 -509.92 -1.37 -7.68 16 4 C 0.00 -0.05 11.33 83.12 0.94 0.89 16 5 C -0.19 -3.40 8.74 23.62 0.21 -3.19 16 6 C -0.26 -6.27 5.24 -19.04 -0.10 -6.37 16 7 C 0.59 16.91 7.34 86.62 0.64 17.55 16 8 O -0.59 -20.82 15.50 -4.12 -0.06 -20.88 16 9 N -0.60 -14.82 2.97 -822.98 -2.45 -17.27 16 10 C 0.11 2.20 5.97 86.36 0.52 2.72 16 11 C -0.13 -2.96 5.16 30.78 0.16 -2.80 16 12 C -0.07 -1.82 2.15 -10.66 -0.02 -1.84 16 13 C -0.11 -3.48 4.80 30.59 0.15 -3.34 16 14 C 0.15 6.09 6.02 86.38 0.52 6.61 16 15 N -0.75 -39.39 5.60 -343.44 -1.92 -41.31 16 16 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -60.78 13.06 21.65 0.28 -60.49 16 20 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C -0.12 -2.76 5.36 30.67 0.16 -2.59 16 25 C 0.11 2.63 6.42 86.36 0.55 3.18 16 26 C 0.08 1.62 6.89 41.78 0.29 1.91 16 27 C -0.09 -1.64 9.87 71.24 0.70 -0.94 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.12 0.27 8.11 -2.39 -0.02 0.25 16 32 H 0.10 0.50 7.04 -2.39 -0.02 0.48 16 33 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.16 2.37 7.74 -2.91 -0.02 2.34 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 2.05 4.52 -2.39 -0.01 2.04 16 37 H 0.08 1.95 6.52 -2.39 -0.02 1.94 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.03 1.01 6.53 -2.39 -0.02 0.99 16 44 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 45 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 46 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 47 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.08 2.00 7.03 -2.39 -0.02 1.99 16 49 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.09 1.09 7.02 -2.39 -0.02 1.07 16 52 H 0.07 1.59 7.03 -2.39 -0.02 1.57 16 Total: -1.00 -76.35 407.42 4.01 -72.35 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.19 Total: 31.60 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 7.31 Total: -4.86 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -5.46 Total: -126.76 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.35 4.01 -72.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568091930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.053 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds