Wall clock time and date at job start Tue Mar 31 2020 18:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46724 * 2 1 4 4 C 1.46502 * 119.99902 * 269.99844 * 3 2 1 5 5 C 1.53002 * 109.46996 * 270.00183 * 4 3 2 6 6 C 1.39047 * 120.00375 * 90.00326 * 3 2 1 7 7 C 1.39216 * 119.93566 * 179.97438 * 6 3 2 8 8 C 1.37609 * 120.07001 * 179.97438 * 7 6 3 9 9 C 1.39797 * 119.93029 * 0.02562 * 8 7 6 10 10 C 1.47525 * 120.06710 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99794 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99672 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99831 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47149 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47250 * 304.99884 * 14 13 12 16 16 C 1.53001 * 109.47347 * 65.00153 * 14 13 12 17 17 C 1.52997 * 109.47049 * 184.99765 * 14 13 12 18 18 N 1.46506 * 109.47289 * 174.99938 * 17 14 13 19 19 C 1.36930 * 120.00258 * 180.02562 * 18 17 14 20 20 H 1.08004 * 119.99823 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00439 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99225 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00268 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47312 * 60.00457 * 23 21 19 25 25 H 1.48506 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47236 * 300.00219 * 23 21 19 27 27 C 1.39795 * 119.86359 * 0.26750 * 9 8 7 28 28 C 1.37611 * 119.92868 * 359.42892 * 27 9 8 29 29 H 1.09002 * 109.46874 * 60.00021 * 1 2 3 30 30 H 1.09001 * 109.46677 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47186 * 300.00052 * 1 2 3 32 32 H 1.09003 * 109.46821 * 240.00392 * 2 1 3 33 33 H 1.08994 * 109.47183 * 119.99898 * 2 1 3 34 34 H 1.09001 * 109.47484 * 30.00650 * 4 3 2 35 35 H 1.09003 * 109.47245 * 150.00133 * 4 3 2 36 36 H 1.09005 * 109.46450 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47163 * 299.99782 * 5 4 3 38 38 H 1.08995 * 109.46864 * 60.00698 * 5 4 3 39 39 H 1.08003 * 119.96346 * 0.02562 * 7 6 3 40 40 H 1.07995 * 120.03407 * 179.97438 * 8 7 6 41 41 H 0.97002 * 120.00609 * 359.97438 * 12 10 9 42 42 H 1.08995 * 109.47509 * 59.99746 * 13 12 10 43 43 H 1.09005 * 109.47035 * 299.99866 * 13 12 10 44 44 H 1.09002 * 109.47620 * 59.99538 * 16 14 13 45 45 H 1.09000 * 109.47757 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.46683 * 300.00277 * 16 14 13 47 47 H 1.09001 * 109.47289 * 54.99809 * 17 14 13 48 48 H 1.09004 * 109.47261 * 295.00065 * 17 14 13 49 49 H 0.97001 * 119.99251 * 0.02562 * 18 17 14 50 50 H 0.97000 * 119.99950 * 179.97438 * 22 21 19 51 51 H 1.07998 * 120.03838 * 179.72966 * 27 9 8 52 52 H 1.07997 * 119.96514 * 180.29425 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8315 -1.7104 6 6 2.2501 2.0368 1.2041 7 6 2.7146 3.3492 1.2025 8 6 2.9444 4.0008 2.3925 9 6 2.7115 3.3432 3.6041 10 6 2.9563 4.0391 4.8816 11 8 3.3615 5.1855 4.8816 12 7 2.7308 3.4041 6.0488 13 6 2.9745 4.0948 7.3175 14 6 2.6415 3.1580 8.4804 15 1 1.6196 2.7943 8.3729 16 6 3.6083 1.9722 8.4731 17 6 2.7761 3.9175 9.8018 18 7 2.3429 3.0574 10.9058 19 6 2.3746 3.5261 12.1920 20 1 2.7186 4.5301 12.3925 21 6 1.9637 2.7113 13.2381 22 7 1.5441 1.4880 12.9935 23 14 2.0076 3.3505 14.9927 24 1 1.1350 4.5468 15.1058 25 1 1.5222 2.2941 15.9166 26 1 3.4010 3.7186 15.3507 27 6 2.2509 2.0233 3.6024 28 6 2.0170 1.3793 2.4090 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 3.8889 2.3450 -2.6546 37 1 4.3883 2.2156 -0.9508 38 1 3.8744 0.7623 -1.8408 39 1 2.8939 3.8567 0.2662 40 1 3.3051 5.0187 2.3906 41 1 2.4072 2.4896 6.0488 42 1 2.3446 4.9825 7.3748 43 1 4.0225 4.3887 7.3758 44 1 4.6302 2.3359 8.5806 45 1 3.3708 1.3045 9.3013 46 1 3.5124 1.4312 7.5317 47 1 2.1535 4.8117 9.7720 48 1 3.8170 4.2044 9.9515 49 1 2.0337 2.1558 10.7256 50 1 1.2572 0.9185 13.7244 51 1 2.0742 1.5112 4.5367 52 1 1.6567 0.3612 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568206057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:35 Heat of formation + Delta-G solvation = -4.606903 kcal Electronic energy + Delta-G solvation = -27747.246964 eV Core-core repulsion = 23939.571128 eV Total energy + Delta-G solvation = -3807.675837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.44203 -39.30367 -37.08267 -36.52587 -34.32805 -33.05321 -32.54501 -31.39512 -30.87782 -29.95738 -28.48622 -26.43284 -25.34569 -24.52964 -23.87227 -22.47826 -22.15312 -21.25021 -20.21626 -19.74200 -18.36956 -17.29592 -16.81376 -16.62502 -15.87809 -15.39348 -15.29813 -14.97139 -14.66587 -14.41512 -14.24105 -14.17558 -13.99763 -13.72209 -13.52271 -13.43630 -13.14171 -12.93852 -12.77485 -12.68220 -12.48751 -12.29068 -12.24761 -12.19812 -11.99160 -11.65657 -11.49782 -11.03246 -10.97693 -10.86702 -10.65442 -10.52785 -10.37000 -10.19139 -10.07207 -9.79992 -9.61867 -9.23955 -8.92560 -8.84092 -7.66542 -6.89035 -5.74166 -3.02234 0.90575 1.21579 2.60045 2.92001 3.31316 3.46867 3.50872 3.52188 3.83324 4.31002 4.34750 4.59342 4.61684 4.63767 4.69146 4.82684 4.85295 4.87982 4.91922 5.02597 5.09898 5.15118 5.18643 5.28364 5.32927 5.34530 5.36756 5.42541 5.45708 5.60922 5.66942 5.72787 5.78861 5.87963 5.92891 6.00433 6.04912 6.09804 6.16483 6.29407 6.30346 6.44437 6.47870 6.60550 6.69776 6.82128 6.82731 6.91925 7.08352 7.62852 7.73002 8.34671 8.45152 9.56256 10.14024 10.49024 11.48846 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.001744 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.574810 B =16048.784755 C =16897.679888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 N -0.622 5.622 4 C 0.115 3.885 5 C -0.173 4.173 6 C 0.242 3.758 7 C -0.210 4.210 8 C -0.009 4.009 9 C -0.195 4.195 10 C 0.560 3.440 11 O -0.549 6.549 12 N -0.723 5.723 13 C 0.127 3.873 14 C -0.111 4.111 15 H 0.076 0.924 16 C -0.141 4.141 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.035 4.035 28 C -0.208 4.208 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.398 0.602 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.021 0.979 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.125 0.875 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 -4.007 -33.993 34.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.008 4.008 3 N -0.331 5.331 4 C -0.008 4.008 5 C -0.232 4.232 6 C 0.138 3.862 7 C -0.232 4.232 8 C -0.029 4.029 9 C -0.200 4.200 10 C 0.349 3.651 11 O -0.429 6.429 12 N -0.375 5.375 13 C 0.004 3.996 14 C -0.130 4.130 15 H 0.094 0.906 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.054 4.054 28 C -0.230 4.230 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.233 0.767 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.039 0.961 48 H 0.040 0.960 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.143 0.857 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.861 -3.185 -33.996 34.156 hybrid contribution -0.308 -0.538 0.951 1.135 sum 0.553 -3.723 -33.045 33.259 Atomic orbital electron populations 1.22234 0.96082 1.02207 1.02684 1.21456 0.94201 0.82223 1.02901 1.46626 1.70140 1.13271 1.03028 1.21449 0.96486 0.97936 0.84898 1.22231 0.97142 1.02199 1.01611 1.18001 0.91153 0.91252 0.85811 1.20625 1.09972 0.94073 0.98575 1.20987 0.92311 0.99299 0.90300 1.19693 1.11234 0.95625 0.93498 1.18178 0.77320 0.85937 0.83689 1.90755 1.46632 1.17703 1.87772 1.45971 1.68056 1.17607 1.05863 1.21405 1.01574 0.95325 0.81328 1.21552 1.00335 0.96241 0.94842 0.90577 1.21792 0.99155 0.97842 1.01080 1.20580 0.97293 0.93095 0.85823 1.42330 1.78523 1.14807 1.01849 1.19207 1.36211 0.97876 0.83684 0.91200 1.24730 1.02114 0.96236 0.97980 1.69647 1.50177 1.07484 1.31085 0.86250 0.77676 0.77508 0.84654 1.21283 1.21727 1.21288 1.21057 0.93580 0.93027 0.97737 1.20589 1.10559 1.01074 0.90757 0.92548 0.91605 0.92009 0.90768 0.90328 0.90767 0.90373 0.91665 0.92030 0.92522 0.85549 0.84858 0.76662 0.91354 0.91341 0.92791 0.91181 0.93966 0.96101 0.95978 0.78221 0.93523 0.85722 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.24 37.16 0.38 -0.41 16 2 C 0.12 0.54 5.86 -4.04 -0.02 0.52 16 3 N -0.62 -3.88 2.59 -171.75 -0.44 -4.33 16 4 C 0.12 0.54 5.86 -4.04 -0.02 0.51 16 5 C -0.17 -0.76 10.24 37.16 0.38 -0.38 16 6 C 0.24 2.03 6.55 -83.86 -0.55 1.48 16 7 C -0.21 -1.87 9.18 -39.45 -0.36 -2.24 16 8 C -0.01 -0.10 9.58 -39.23 -0.38 -0.48 16 9 C -0.20 -2.31 5.88 -104.95 -0.62 -2.93 16 10 C 0.56 8.09 7.76 -12.48 -0.10 7.99 16 11 O -0.55 -9.86 16.34 5.29 0.09 -9.77 16 12 N -0.72 -9.38 5.23 -61.35 -0.32 -9.70 16 13 C 0.13 1.87 5.06 -4.04 -0.02 1.85 16 14 C -0.11 -1.76 2.46 -90.62 -0.22 -1.98 16 15 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.14 -2.15 8.94 37.16 0.33 -1.81 16 17 C 0.16 3.25 5.65 -4.04 -0.02 3.23 16 18 N -0.73 -18.53 5.33 -59.90 -0.32 -18.85 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.94 -28.32 13.06 55.49 0.72 -27.60 16 23 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C -0.03 -0.33 9.53 -39.23 -0.37 -0.70 16 28 C -0.21 -1.76 9.18 -39.44 -0.36 -2.12 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 33 H 0.08 0.37 6.17 -51.93 -0.32 0.05 16 34 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 35 H 0.08 0.36 6.17 -51.93 -0.32 0.04 16 36 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.13 0.89 6.11 -52.48 -0.32 0.57 16 40 H 0.13 1.48 7.64 -52.49 -0.40 1.08 16 41 H 0.40 4.24 5.67 -40.82 -0.23 4.01 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 46 H 0.04 0.52 7.18 -51.93 -0.37 0.15 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.38 10.09 6.85 -40.82 -0.28 9.81 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 51 H 0.12 0.97 6.39 -52.49 -0.34 0.64 16 52 H 0.13 0.86 6.11 -52.49 -0.32 0.53 16 LS Contribution 416.36 15.07 6.27 6.27 Total: -1.00 -33.72 416.36 -9.96 -43.68 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.73 Total: 7.60 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.20 Total: -4.93 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.36 Total: -60.48 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.72 -9.96 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568206057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.073 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds