Wall clock time and date at job start Tue Mar 31 2020 18:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46724 * 2 1 4 4 C 1.46502 * 119.99902 * 269.99844 * 3 2 1 5 5 C 1.53002 * 109.46996 * 270.00183 * 4 3 2 6 6 C 1.39047 * 120.00375 * 90.00326 * 3 2 1 7 7 C 1.39216 * 119.93566 * 179.97438 * 6 3 2 8 8 C 1.37609 * 120.07001 * 179.97438 * 7 6 3 9 9 C 1.39797 * 119.93029 * 0.02562 * 8 7 6 10 10 C 1.47525 * 120.06710 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99794 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99672 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99831 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47149 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47250 * 304.99884 * 14 13 12 16 16 C 1.53001 * 109.47347 * 65.00153 * 14 13 12 17 17 C 1.52997 * 109.47049 * 184.99765 * 14 13 12 18 18 N 1.46506 * 109.47289 * 174.99938 * 17 14 13 19 19 C 1.36930 * 120.00258 * 180.02562 * 18 17 14 20 20 H 1.08004 * 119.99823 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00439 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99225 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00268 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47312 * 60.00457 * 23 21 19 25 25 H 1.48506 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47236 * 300.00219 * 23 21 19 27 27 C 1.39795 * 119.86359 * 0.26750 * 9 8 7 28 28 C 1.37611 * 119.92868 * 359.42892 * 27 9 8 29 29 H 1.09002 * 109.46874 * 60.00021 * 1 2 3 30 30 H 1.09001 * 109.46677 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47186 * 300.00052 * 1 2 3 32 32 H 1.09003 * 109.46821 * 240.00392 * 2 1 3 33 33 H 1.08994 * 109.47183 * 119.99898 * 2 1 3 34 34 H 1.09001 * 109.47484 * 30.00650 * 4 3 2 35 35 H 1.09003 * 109.47245 * 150.00133 * 4 3 2 36 36 H 1.09005 * 109.46450 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47163 * 299.99782 * 5 4 3 38 38 H 1.08995 * 109.46864 * 60.00698 * 5 4 3 39 39 H 1.08003 * 119.96346 * 0.02562 * 7 6 3 40 40 H 1.07995 * 120.03407 * 179.97438 * 8 7 6 41 41 H 0.97002 * 120.00609 * 359.97438 * 12 10 9 42 42 H 1.08995 * 109.47509 * 59.99746 * 13 12 10 43 43 H 1.09005 * 109.47035 * 299.99866 * 13 12 10 44 44 H 1.09002 * 109.47620 * 59.99538 * 16 14 13 45 45 H 1.09000 * 109.47757 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.46683 * 300.00277 * 16 14 13 47 47 H 1.09001 * 109.47289 * 54.99809 * 17 14 13 48 48 H 1.09004 * 109.47261 * 295.00065 * 17 14 13 49 49 H 0.97001 * 119.99251 * 0.02562 * 18 17 14 50 50 H 0.97000 * 119.99950 * 179.97438 * 22 21 19 51 51 H 1.07998 * 120.03838 * 179.72966 * 27 9 8 52 52 H 1.07997 * 119.96514 * 180.29425 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8315 -1.7104 6 6 2.2501 2.0368 1.2041 7 6 2.7146 3.3492 1.2025 8 6 2.9444 4.0008 2.3925 9 6 2.7115 3.3432 3.6041 10 6 2.9563 4.0391 4.8816 11 8 3.3615 5.1855 4.8816 12 7 2.7308 3.4041 6.0488 13 6 2.9745 4.0948 7.3175 14 6 2.6415 3.1580 8.4804 15 1 1.6196 2.7943 8.3729 16 6 3.6083 1.9722 8.4731 17 6 2.7761 3.9175 9.8018 18 7 2.3429 3.0574 10.9058 19 6 2.3746 3.5261 12.1920 20 1 2.7186 4.5301 12.3925 21 6 1.9637 2.7113 13.2381 22 7 1.5441 1.4880 12.9935 23 14 2.0076 3.3505 14.9927 24 1 1.1350 4.5468 15.1058 25 1 1.5222 2.2941 15.9166 26 1 3.4010 3.7186 15.3507 27 6 2.2509 2.0233 3.6024 28 6 2.0170 1.3793 2.4090 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 3.8889 2.3450 -2.6546 37 1 4.3883 2.2156 -0.9508 38 1 3.8744 0.7623 -1.8408 39 1 2.8939 3.8567 0.2662 40 1 3.3051 5.0187 2.3906 41 1 2.4072 2.4896 6.0488 42 1 2.3446 4.9825 7.3748 43 1 4.0225 4.3887 7.3758 44 1 4.6302 2.3359 8.5806 45 1 3.3708 1.3045 9.3013 46 1 3.5124 1.4312 7.5317 47 1 2.1535 4.8117 9.7720 48 1 3.8170 4.2044 9.9515 49 1 2.0337 2.1558 10.7256 50 1 1.2572 0.9185 13.7244 51 1 2.0742 1.5112 4.5367 52 1 1.6567 0.3612 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568206057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:34 Heat of formation + Delta-G solvation = -24.541614 kcal Electronic energy + Delta-G solvation = -27748.111398 eV Core-core repulsion = 23939.571128 eV Total energy + Delta-G solvation = -3808.540271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28161 -40.18714 -38.27497 -37.44386 -35.96560 -34.17447 -33.44226 -32.32455 -31.71194 -31.42353 -29.13977 -27.71274 -26.98279 -24.98359 -24.91365 -23.98274 -22.83948 -22.08169 -21.42823 -20.73558 -19.42560 -18.86001 -17.80822 -17.43471 -16.87815 -16.51306 -16.46655 -16.02812 -15.68604 -15.47540 -15.36946 -15.29707 -14.94036 -14.75300 -14.54285 -14.26701 -14.15295 -13.97035 -13.66671 -13.60983 -13.56105 -13.23367 -13.17822 -12.95026 -12.76458 -12.75024 -12.67599 -12.21097 -12.18026 -12.10386 -11.98851 -11.86353 -11.71047 -11.65024 -11.53210 -10.95375 -10.92196 -10.84967 -10.08638 -9.95842 -8.98406 -8.27210 -7.94346 -5.22569 0.09834 0.50792 1.48242 1.51209 1.57257 1.96406 2.11777 2.22469 2.58038 3.00911 3.39037 3.71298 3.80459 3.87093 3.93363 3.97492 4.07346 4.09419 4.20504 4.25306 4.35655 4.40185 4.47478 4.50403 4.53671 4.54977 4.55736 4.69319 4.71973 4.78312 4.87096 4.91878 4.94758 4.99100 5.00920 5.04966 5.12690 5.13738 5.26690 5.30817 5.34208 5.38037 5.40355 5.41868 5.48687 5.50765 5.55088 5.79119 6.28165 6.32634 6.48814 6.60047 7.27393 7.35050 8.10065 8.35152 9.28864 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.001744 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.574810 B =16048.784755 C =16897.679888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.618 5.618 4 C 0.110 3.890 5 C -0.168 4.168 6 C 0.246 3.754 7 C -0.213 4.213 8 C -0.020 4.020 9 C -0.222 4.222 10 C 0.559 3.441 11 O -0.594 6.594 12 N -0.713 5.713 13 C 0.139 3.861 14 C -0.093 4.093 15 H 0.079 0.921 16 C -0.135 4.135 17 C 0.157 3.843 18 N -0.740 5.740 19 C -0.249 4.249 20 H 0.073 0.927 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.279 1.279 27 C -0.031 4.031 28 C -0.211 4.211 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.121 0.879 41 H 0.411 0.589 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.019 0.981 48 H 0.021 0.979 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.142 0.858 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -5.177 -35.885 36.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.325 5.325 4 C -0.013 4.013 5 C -0.226 4.226 6 C 0.139 3.861 7 C -0.235 4.235 8 C -0.040 4.040 9 C -0.227 4.227 10 C 0.349 3.651 11 O -0.477 6.477 12 N -0.365 5.365 13 C 0.014 3.986 14 C -0.113 4.113 15 H 0.097 0.903 16 C -0.193 4.193 17 C 0.030 3.970 18 N -0.384 5.384 19 C -0.381 4.381 20 H 0.091 0.909 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.205 1.205 27 C -0.050 4.050 28 C -0.233 4.233 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.249 0.751 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.210 0.790 50 H 0.061 0.939 51 H 0.160 0.840 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.567 -4.371 -35.938 36.207 hybrid contribution -0.227 -0.208 1.348 1.382 sum 0.340 -4.579 -34.590 34.894 Atomic orbital electron populations 1.22185 0.95835 1.02797 1.01905 1.21634 0.94308 0.81346 1.03930 1.46886 1.68892 1.13855 1.02833 1.21622 0.97088 0.98017 0.84548 1.22177 0.96445 1.02311 1.01708 1.18158 0.90014 0.91075 0.86807 1.20737 1.09854 0.94507 0.98413 1.20998 0.92940 0.99083 0.91017 1.19551 1.14121 0.96793 0.92236 1.18618 0.76336 0.85478 0.84651 1.90722 1.48878 1.19674 1.88385 1.45800 1.67720 1.18060 1.04916 1.21135 1.01020 0.94777 0.81650 1.21328 1.00847 0.96168 0.92917 0.90263 1.21728 0.98593 0.97136 1.01819 1.20719 0.96742 0.92930 0.86646 1.42483 1.78569 1.15060 1.02260 1.19605 1.35357 0.98019 0.85147 0.90911 1.25542 1.02511 0.96606 1.01922 1.69796 1.51457 1.08592 1.31916 0.85212 0.77879 0.76896 0.79763 1.20518 1.21945 1.20507 1.21217 0.92718 0.92052 0.99034 1.20825 1.10212 1.01925 0.90344 0.92574 0.90379 0.93491 0.89056 0.90044 0.88999 0.90379 0.90377 0.93639 0.92419 0.84030 0.86069 0.75118 0.92252 0.91884 0.93001 0.93653 0.90661 0.96291 0.96085 0.79042 0.93947 0.84043 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.24 71.98 0.74 -0.38 16 2 C 0.11 0.72 5.86 86.38 0.51 1.22 16 3 N -0.62 -6.20 2.59 -697.28 -1.81 -8.01 16 4 C 0.11 0.75 5.86 86.38 0.51 1.26 16 5 C -0.17 -1.12 10.24 71.98 0.74 -0.39 16 6 C 0.25 3.68 6.55 38.47 0.25 3.93 16 7 C -0.21 -3.61 9.18 22.36 0.21 -3.41 16 8 C -0.02 -0.45 9.58 22.50 0.22 -0.24 16 9 C -0.22 -5.21 5.88 -20.07 -0.12 -5.33 16 10 C 0.56 16.27 7.76 86.69 0.67 16.95 16 11 O -0.59 -22.06 16.34 -4.00 -0.07 -22.12 16 12 N -0.71 -18.01 5.23 -466.28 -2.44 -20.45 16 13 C 0.14 4.04 5.06 86.38 0.44 4.47 16 14 C -0.09 -2.93 2.46 -10.79 -0.03 -2.96 16 15 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 16 C -0.14 -3.99 8.94 71.98 0.64 -3.34 16 17 C 0.16 6.39 5.65 86.38 0.49 6.88 16 18 N -0.74 -37.91 5.33 -343.44 -1.83 -39.74 16 19 C -0.25 -14.19 9.99 84.04 0.84 -13.35 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 22 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 23 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 27 C -0.03 -0.54 9.53 22.50 0.21 -0.33 16 28 C -0.21 -3.14 9.18 22.36 0.21 -2.94 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.33 8.07 -2.39 -0.02 0.31 16 33 H 0.08 0.51 6.17 -2.39 -0.01 0.50 16 34 H 0.09 0.35 8.07 -2.39 -0.02 0.33 16 35 H 0.08 0.56 6.17 -2.39 -0.01 0.54 16 36 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.14 1.86 6.11 -2.91 -0.02 1.84 16 40 H 0.12 2.88 7.64 -2.91 -0.02 2.86 16 41 H 0.41 8.07 5.67 -92.71 -0.53 7.54 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.57 7.18 -2.39 -0.02 1.56 16 46 H 0.07 1.70 7.18 -2.39 -0.02 1.68 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.38 20.11 6.85 -92.71 -0.63 19.48 16 50 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 51 H 0.14 1.89 6.39 -2.91 -0.02 1.87 16 52 H 0.15 1.55 6.11 -2.91 -0.02 1.54 16 Total: -1.00 -73.14 416.36 2.91 -70.24 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.25 Total: 32.01 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 6.98 Total: -1.74 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -5.79 Total: -127.03 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.07 Total: -22.12 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -73.14 2.91 -70.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568206057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.697 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds