Wall clock time and date at job start Tue Mar 31 2020 17:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47223 * 2 1 4 4 C 1.50701 * 109.47034 * 120.00168 * 2 1 3 5 5 N 1.34656 * 125.80159 * 300.18600 * 4 2 1 6 6 H 0.97003 * 124.85564 * 0.02562 * 5 4 2 7 7 C 1.36448 * 110.29651 * 180.28086 * 5 4 2 8 8 C 1.34489 * 108.85600 * 359.73074 * 7 5 4 9 9 C 1.36770 * 125.80004 * 119.99588 * 4 2 1 10 10 C 1.47262 * 126.94494 * 359.97438 * 9 4 2 11 11 O 1.21627 * 119.99827 * 49.36905 * 10 9 4 12 12 N 1.34770 * 120.00087 * 229.09553 * 10 9 4 13 13 C 1.46929 * 120.62971 * 355.67970 * 12 10 9 14 14 C 1.53625 * 108.54082 * 126.37063 * 13 12 10 15 15 C 1.53041 * 109.24360 * 54.85642 * 14 13 12 16 16 C 1.53036 * 109.53814 * 298.50948 * 15 14 13 17 17 H 1.08994 * 109.49730 * 301.41095 * 16 15 14 18 18 C 1.52997 * 109.49885 * 181.31254 * 16 15 14 19 19 H 1.09003 * 109.47404 * 300.16725 * 18 16 15 20 20 C 1.53008 * 109.46902 * 60.16273 * 18 16 15 21 21 N 1.46497 * 109.47489 * 180.16352 * 18 16 15 22 22 C 1.36931 * 120.00234 * 155.00390 * 21 18 16 23 23 H 1.08005 * 120.00345 * 0.02562 * 22 21 18 24 24 C 1.38811 * 120.00078 * 180.02562 * 22 21 18 25 25 N 1.31624 * 120.00214 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 120.00187 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46886 * 59.99945 * 26 24 22 28 28 H 1.48498 * 109.47182 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47090 * 300.00225 * 26 24 22 30 30 C 1.46933 * 120.63236 * 175.96339 * 12 10 9 31 31 H 1.09000 * 109.46902 * 299.99891 * 1 2 3 32 32 H 1.08999 * 109.47467 * 59.99654 * 1 2 3 33 33 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46423 * 239.99881 * 2 1 3 35 35 H 1.08998 * 109.46665 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46892 * 300.00069 * 3 2 1 37 37 H 1.09000 * 109.47093 * 60.00225 * 3 2 1 38 38 H 1.08003 * 125.57308 * 179.70430 * 7 5 4 39 39 H 1.08002 * 126.83092 * 179.97438 * 8 7 5 40 40 H 1.08995 * 109.58683 * 246.20273 * 13 12 10 41 41 H 1.09000 * 109.58672 * 6.62823 * 13 12 10 42 42 H 1.08995 * 109.63635 * 294.86400 * 14 13 12 43 43 H 1.09003 * 109.43267 * 174.72380 * 14 13 12 44 44 H 1.09005 * 109.45978 * 178.48984 * 15 14 13 45 45 H 1.09003 * 109.44837 * 58.52755 * 15 14 13 46 46 H 1.08999 * 109.46916 * 299.99794 * 20 18 16 47 47 H 1.09003 * 109.46722 * 60.00034 * 20 18 16 48 48 H 1.09002 * 109.47281 * 180.02562 * 20 18 16 49 49 H 0.97002 * 119.99683 * 335.00239 * 21 18 16 50 50 H 0.96993 * 120.00294 * 179.97438 * 25 24 22 51 51 H 1.08992 * 109.58062 * 353.36751 * 30 12 10 52 52 H 1.08993 * 109.58373 * 113.79880 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7771 -0.3558 2.5042 6 1 1.2359 0.4039 2.7703 7 6 2.3934 -1.2145 3.3671 8 6 3.0546 -2.1451 2.6561 9 6 2.8218 -1.8272 1.2432 10 6 3.3387 -2.5592 0.0746 11 8 3.8905 -1.9556 -0.8257 12 7 3.2052 -3.8984 0.0053 13 6 2.6319 -4.6527 1.1283 14 6 1.4702 -5.5079 0.6000 15 6 1.9703 -6.3811 -0.5530 16 6 2.4679 -5.4887 -1.6923 17 1 1.6582 -4.8401 -2.0265 18 6 2.9373 -6.3622 -2.8575 19 1 3.7459 -7.0116 -2.5221 20 6 1.7704 -7.2170 -3.3564 21 7 3.4171 -5.5075 -3.9463 22 6 4.3282 -5.9920 -4.8463 23 1 4.6929 -7.0044 -4.7539 24 6 4.7832 -5.1820 -5.8777 25 7 4.3385 -3.9483 -5.9908 26 14 6.0268 -5.8426 -7.1052 27 1 5.4556 -7.0233 -7.8016 28 1 6.3476 -4.7886 -8.1008 29 1 7.2651 -6.2415 -6.3892 30 6 3.6359 -4.6327 -1.1924 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.3566 -1.1561 4.4449 39 1 3.6406 -2.9635 3.0477 40 1 3.3956 -5.2975 1.5631 41 1 2.2629 -3.9591 1.8838 42 1 0.6699 -4.8590 0.2443 43 1 1.0944 -6.1439 1.4015 44 1 1.1553 -7.0091 -0.9130 45 1 2.7872 -7.0121 -0.2026 46 1 1.4135 -7.8529 -2.5463 47 1 0.9618 -6.5675 -3.6919 48 1 2.1048 -7.8396 -4.1862 49 1 3.0892 -4.5984 -4.0296 50 1 4.6567 -3.3822 -6.7112 51 1 3.9293 -3.9259 -1.9684 52 1 4.4797 -5.2759 -0.9428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568411158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:38 Heat of formation + Delta-G solvation = -17.912771 kcal Electronic energy + Delta-G solvation = -30174.239971 eV Core-core repulsion = 26365.987149 eV Total energy + Delta-G solvation = -3808.252823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.35246 -40.76583 -38.88085 -36.92091 -36.14297 -34.61471 -33.08055 -32.26714 -31.13336 -29.82459 -29.39596 -28.12143 -26.62633 -25.90785 -24.52696 -23.39438 -22.74196 -21.79395 -21.36683 -20.92082 -19.29719 -19.08938 -18.42640 -17.34954 -16.78958 -16.66353 -16.29469 -15.65853 -15.57766 -15.39020 -15.30409 -15.15025 -15.06436 -14.71671 -14.31805 -14.17583 -14.07522 -13.88931 -13.82418 -13.71622 -13.34450 -13.28292 -13.11185 -12.99287 -12.74042 -12.51573 -12.37021 -12.19787 -12.17596 -12.07695 -11.98050 -11.89246 -11.77893 -11.64967 -11.35596 -11.17676 -10.94944 -10.80566 -9.68873 -9.48591 -9.07034 -8.97562 -7.90269 -5.19019 0.96665 1.44397 1.48762 1.54489 1.60747 1.95905 2.29483 2.49547 2.57322 3.42650 3.64430 3.70368 3.85660 3.89193 3.97821 4.00084 4.14376 4.17654 4.25808 4.35669 4.40263 4.41592 4.47913 4.60173 4.61616 4.65799 4.70844 4.77558 4.81711 4.83782 4.88192 4.95676 4.98763 5.02101 5.04874 5.07098 5.09590 5.15807 5.18762 5.27795 5.28740 5.32997 5.40100 5.50414 5.56912 5.61828 5.68367 5.83145 6.05972 6.30299 6.57154 6.73858 7.32075 7.35296 8.13509 8.35705 9.33222 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.003404 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.011671 B = 8224.817907 C = 9388.413447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.138 4.138 4 C 0.095 3.905 5 N -0.534 5.534 6 H 0.431 0.569 7 C 0.013 3.987 8 C -0.190 4.190 9 C -0.252 4.252 10 C 0.575 3.425 11 O -0.601 6.601 12 N -0.603 5.603 13 C 0.097 3.903 14 C -0.125 4.125 15 C -0.108 4.108 16 C -0.087 4.087 17 H 0.047 0.953 18 C 0.172 3.828 19 H 0.047 0.953 20 C -0.152 4.152 21 N -0.737 5.737 22 C -0.235 4.235 23 H 0.078 0.922 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.971 3.029 27 H -0.275 1.275 28 H -0.299 1.299 29 H -0.279 1.279 30 C 0.132 3.868 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.215 0.785 39 H 0.156 0.844 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.034 0.966 49 H 0.367 0.633 50 H 0.247 0.753 51 H 0.046 0.954 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 3.949 27.183 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 C -0.195 4.195 4 C -0.024 4.024 5 N -0.130 5.130 6 H 0.271 0.729 7 C -0.115 4.115 8 C -0.213 4.213 9 C -0.263 4.263 10 C 0.366 3.634 11 O -0.483 6.483 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.163 4.163 15 C -0.146 4.146 16 C -0.107 4.107 17 H 0.065 0.935 18 C 0.064 3.936 19 H 0.065 0.935 20 C -0.212 4.212 21 N -0.377 5.377 22 C -0.367 4.367 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.801 3.199 27 H -0.201 1.201 28 H -0.226 1.226 29 H -0.205 1.205 30 C 0.008 3.992 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.231 0.769 39 H 0.174 0.826 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.127 0.873 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.198 0.802 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.587 4.215 26.725 29.432 hybrid contribution 0.871 0.499 -1.715 1.987 sum -10.716 4.714 25.010 27.615 Atomic orbital electron populations 1.21808 0.92083 1.02130 1.03481 1.19852 0.97242 0.96466 0.92681 1.21771 1.00522 0.93812 1.03388 1.19952 1.00255 0.95317 0.86836 1.41389 1.41527 1.26251 1.03805 0.72935 1.22327 0.99555 0.92360 0.97246 1.22134 1.06630 1.03433 0.89151 1.20074 1.11123 1.01426 0.93633 1.18262 0.77649 0.81861 0.85641 1.90790 1.45708 1.69036 1.42790 1.48124 1.61506 1.05892 1.17839 1.22337 0.96189 0.95732 0.88162 1.21967 0.97098 0.98408 0.98784 1.21620 1.01748 0.97308 0.93900 1.21573 0.96285 0.96827 0.95996 0.93476 1.20480 0.94685 0.91510 0.86922 0.93527 1.22310 0.98479 0.99549 1.00847 1.42676 1.50689 1.13501 1.30836 1.19598 1.15541 0.97123 1.04441 0.90440 1.25579 1.03329 0.96447 1.01858 1.69859 1.49179 1.08412 1.34890 0.85237 0.79231 0.76824 0.78653 1.20076 1.22552 1.20489 1.21302 0.96614 0.94530 0.86708 0.90082 0.91400 0.93284 0.92824 0.94273 0.91305 0.90077 0.76873 0.82597 0.90147 0.87032 0.92800 0.87301 0.89836 0.90638 0.90010 0.94559 0.94633 0.80208 0.94385 0.93508 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.18 71.98 0.66 -1.81 16 2 C -0.04 -1.05 3.27 -11.54 -0.04 -1.09 16 3 C -0.14 -2.81 9.18 71.98 0.66 -2.15 16 4 C 0.09 2.21 5.68 41.78 0.24 2.45 16 5 N -0.53 -7.16 5.90 -182.72 -1.08 -8.24 16 6 H 0.43 2.70 8.96 -92.71 -0.83 1.87 16 7 C 0.01 0.16 11.89 83.12 0.99 1.15 16 8 C -0.19 -3.62 8.73 23.62 0.21 -3.41 16 9 C -0.25 -7.19 5.24 -19.04 -0.10 -7.29 16 10 C 0.58 22.16 7.13 86.62 0.62 22.78 16 11 O -0.60 -30.14 15.67 -4.12 -0.06 -30.21 16 12 N -0.60 -20.27 2.97 -822.12 -2.44 -22.71 16 13 C 0.10 2.14 6.00 86.51 0.52 2.66 16 14 C -0.12 -2.42 6.10 30.82 0.19 -2.24 16 15 C -0.11 -2.57 4.85 30.62 0.15 -2.42 16 16 C -0.09 -3.04 1.97 -10.72 -0.02 -3.07 16 17 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 18 C 0.17 7.06 2.47 44.99 0.11 7.17 16 19 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 20 C -0.15 -5.45 9.15 71.98 0.66 -4.79 16 21 N -0.74 -39.82 4.52 -322.94 -1.46 -41.28 16 22 C -0.24 -13.78 9.93 84.03 0.83 -12.94 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 24 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 25 N -0.97 -64.41 13.06 21.65 0.28 -64.13 16 26 Si 0.97 49.02 29.55 68.60 2.03 51.05 16 27 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 28 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 29 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 30 C 0.13 5.26 5.46 86.36 0.47 5.73 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.88 6.81 -2.39 -0.02 1.86 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.16 2.48 7.74 -2.91 -0.02 2.45 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 2.12 4.52 -2.39 -0.01 2.11 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.77 6.37 -2.38 -0.02 1.75 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.08 2.22 6.41 -2.39 -0.02 2.20 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.37 22.10 7.61 -92.71 -0.71 21.40 16 50 H 0.25 16.00 8.31 -92.71 -0.77 15.22 16 51 H 0.05 2.43 6.53 -2.39 -0.02 2.41 16 52 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -85.63 405.93 3.26 -82.37 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.62 Total: 36.88 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.61 Total: -3.74 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -4.69 Total: -136.36 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.21 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -85.63 3.26 -82.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568411158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.456 kcal (2) G-P(sol) polarization free energy of solvation -85.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds