Wall clock time and date at job start Tue Mar 31 2020 18:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46993 * 2 1 4 4 C 1.36444 * 124.84857 * 89.97673 * 3 2 1 5 5 C 1.50707 * 125.57396 * 0.02562 * 4 3 2 6 6 C 1.34492 * 108.85863 * 180.02562 * 4 3 2 7 7 C 1.46683 * 106.33021 * 359.97438 * 6 4 3 8 8 C 1.47259 * 126.94172 * 179.97438 * 7 6 4 9 9 O 1.21629 * 120.00099 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00141 * 0.02562 * 8 7 6 11 11 C 1.46505 * 120.00098 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.01257 * 33.61023 * 11 10 8 13 13 C 1.54263 * 110.07103 * 272.19209 * 11 10 8 14 14 C 1.54887 * 104.19705 * 264.30147 * 13 11 10 15 15 C 1.54897 * 102.74744 * 322.06277 * 14 13 11 16 16 C 1.53874 * 110.02911 * 154.99983 * 11 10 8 17 17 H 1.08994 * 110.03354 * 0.02562 * 16 11 10 18 18 C 1.53000 * 110.03037 * 238.61563 * 16 11 10 19 19 N 1.46499 * 109.46840 * 175.00175 * 18 16 11 20 20 C 1.36936 * 120.00002 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00140 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00367 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00444 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47261 * 59.99582 * 24 22 20 26 26 H 1.48502 * 109.47375 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46897 * 300.00142 * 24 22 20 28 28 C 1.34654 * 124.85566 * 270.28723 * 3 2 1 29 29 C 1.50705 * 125.80004 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.47411 * 299.99310 * 1 2 3 31 31 H 1.08995 * 109.47238 * 60.00093 * 1 2 3 32 32 H 1.09007 * 109.46675 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47411 * 240.00690 * 2 1 3 34 34 H 1.09000 * 109.47406 * 120.00335 * 2 1 3 35 35 H 1.08994 * 109.47040 * 270.00054 * 5 4 3 36 36 H 1.08998 * 109.46747 * 29.99932 * 5 4 3 37 37 H 1.08998 * 109.47015 * 149.99844 * 5 4 3 38 38 H 1.07997 * 126.83459 * 179.97438 * 6 4 3 39 39 H 0.97000 * 119.99616 * 0.02562 * 10 8 7 40 40 H 1.09001 * 110.49096 * 22.98347 * 13 11 10 41 41 H 1.09004 * 110.48173 * 145.49433 * 13 11 10 42 42 H 1.08998 * 110.75286 * 80.37381 * 14 13 11 43 43 H 1.08991 * 110.75720 * 203.56154 * 14 13 11 44 44 H 1.08998 * 110.48304 * 279.25794 * 15 14 13 45 45 H 1.09000 * 110.48408 * 156.62265 * 15 14 13 46 46 H 1.09002 * 109.47398 * 295.00502 * 18 16 11 47 47 H 1.09001 * 109.47194 * 55.00682 * 18 16 11 48 48 H 0.97000 * 120.00420 * 0.02562 * 19 18 16 49 49 H 0.96996 * 120.00586 * 180.02562 * 23 22 20 50 50 H 1.08988 * 109.47277 * 270.15880 * 29 28 3 51 51 H 1.09004 * 109.47029 * 30.16152 * 29 28 3 52 52 H 1.09003 * 109.46698 * 150.15364 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2777 2.1165 1.1198 5 6 2.1094 1.6404 2.5397 6 6 2.7083 3.3355 0.7493 7 6 2.7120 3.3435 -0.7175 8 6 3.1054 4.4583 -1.5956 9 8 3.0592 4.3263 -2.8038 10 7 3.5168 5.6248 -1.0604 11 6 3.9078 6.7341 -1.9339 12 1 3.3034 6.7254 -2.8409 13 6 5.4035 6.6223 -2.2943 14 6 6.1115 7.5394 -1.2664 15 6 5.1273 8.7282 -1.1341 16 6 3.7321 8.0730 -1.1962 17 1 3.3565 7.8974 -0.1882 18 6 2.7643 8.9730 -1.9670 19 7 2.5133 10.1933 -1.1962 20 6 1.6718 11.1541 -1.6899 21 1 1.1927 11.0121 -2.6475 22 6 1.4343 12.3106 -0.9599 23 7 2.0177 12.4835 0.2072 24 14 0.2858 13.6209 -1.6331 25 1 -1.0658 13.0392 -1.8332 26 1 0.2015 14.7478 -0.6696 27 1 0.8081 14.1172 -2.9316 28 6 2.2696 2.1086 -1.1050 29 6 2.0959 1.6405 -2.5269 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.0998 1.8677 2.8818 36 1 2.2741 0.5638 2.5838 37 1 2.8325 2.1452 3.1803 38 1 2.9943 4.1471 1.4019 39 1 3.5541 5.7299 -0.0968 40 1 5.7461 5.5931 -2.1868 41 1 5.5788 6.9776 -3.3098 42 1 6.2309 7.0286 -0.3109 43 1 7.0765 7.8737 -1.6472 44 1 5.2584 9.4257 -1.9614 45 1 5.2684 9.2358 -0.1799 46 1 3.2012 9.2353 -2.9306 47 1 1.8246 8.4440 -2.1260 48 1 2.9432 10.3207 -0.3360 49 1 1.8515 13.2914 0.7176 50 1 3.0218 1.1823 -2.8742 51 1 1.2890 0.9091 -2.5727 52 1 1.8511 2.4918 -3.1622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568529771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:04 Heat of formation + Delta-G solvation = -2.692798 kcal Electronic energy + Delta-G solvation = -28906.580516 eV Core-core repulsion = 25098.987681 eV Total energy + Delta-G solvation = -3807.592835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68149 -39.54699 -37.66029 -34.44108 -34.37890 -33.21443 -32.79476 -31.29022 -29.78052 -29.34064 -28.46930 -27.48830 -25.13665 -24.33352 -23.87561 -22.26000 -21.72153 -20.63139 -19.84309 -19.48375 -18.56330 -17.17255 -16.87301 -16.11189 -15.94143 -15.57636 -15.01898 -14.95128 -14.49478 -14.33615 -14.00140 -13.75585 -13.56034 -13.49887 -13.37758 -13.30241 -13.09771 -13.04720 -12.74300 -12.68602 -12.58570 -12.32384 -11.90811 -11.85936 -11.73857 -11.52435 -11.41081 -11.16814 -10.85158 -10.72954 -10.68900 -10.45250 -10.32296 -10.19600 -9.94293 -9.65585 -9.53797 -8.85590 -8.79476 -8.62079 -8.09020 -6.84328 -5.70179 -2.97907 1.73084 2.24196 2.53074 3.48978 3.52669 3.53965 3.58416 3.70468 4.21273 4.41489 4.51992 4.62490 4.63509 4.71110 4.83582 4.92985 4.97391 5.05965 5.08540 5.13062 5.21509 5.24970 5.29449 5.45484 5.50309 5.54483 5.59328 5.63356 5.64849 5.75023 5.75942 5.81594 5.88505 5.94502 6.00551 6.04051 6.13119 6.18044 6.32012 6.36535 6.41542 6.61388 6.69272 6.71254 6.81333 6.89695 6.95473 7.05428 7.09580 7.76414 7.85540 8.49240 8.57507 9.60259 10.18983 10.54295 11.52889 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002449 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.044106 B =11430.284929 C =12158.747926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.009 3.991 5 C -0.082 4.082 6 C -0.164 4.164 7 C -0.231 4.231 8 C 0.591 3.409 9 O -0.555 6.555 10 N -0.714 5.714 11 C 0.148 3.852 12 H 0.091 0.909 13 C -0.129 4.129 14 C -0.125 4.125 15 C -0.111 4.111 16 C -0.102 4.102 17 H 0.077 0.923 18 C 0.162 3.838 19 N -0.731 5.731 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.104 3.896 29 C -0.093 4.093 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.398 0.602 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.022 0.978 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.074 0.926 51 H 0.059 0.941 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -28.872 2.921 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 N -0.116 5.116 4 C -0.099 4.099 5 C -0.140 4.140 6 C -0.188 4.188 7 C -0.241 4.241 8 C 0.380 3.620 9 O -0.435 6.435 10 N -0.364 5.364 11 C 0.043 3.957 12 H 0.110 0.890 13 C -0.168 4.168 14 C -0.163 4.163 15 C -0.149 4.149 16 C -0.122 4.122 17 H 0.095 0.905 18 C 0.034 3.966 19 N -0.375 5.375 20 C -0.367 4.367 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.012 4.012 29 C -0.150 4.150 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.258 -29.187 1.988 29.436 hybrid contribution -0.554 0.890 0.587 1.202 sum 2.704 -28.297 2.574 28.542 Atomic orbital electron populations 1.22173 0.94161 1.03011 1.03511 1.21854 0.95734 0.80765 1.04360 1.43621 1.51169 1.11715 1.05112 1.20158 1.08412 0.92699 0.88598 1.20316 1.02938 1.00967 0.89760 1.21795 1.07110 0.96733 0.93190 1.20135 1.15831 0.94933 0.93161 1.17330 0.76019 0.81656 0.87001 1.90711 1.55537 1.82629 1.14672 1.45941 1.67418 1.12924 1.10134 1.21605 0.95282 0.84832 0.93949 0.89049 1.22733 0.94939 0.99705 0.99433 1.22532 0.98324 0.96684 0.98727 1.22364 0.92919 0.96879 1.02761 1.22213 0.96826 0.93279 0.99864 0.90515 1.20734 0.94594 0.87518 0.93773 1.42324 1.55461 1.17206 1.22475 1.19204 1.18793 0.96648 1.02097 0.91305 1.24718 1.00904 0.98492 0.96983 1.69646 1.47369 1.28015 1.13415 0.86271 0.80747 0.81456 0.77755 1.21340 1.21741 1.21298 1.20246 1.00914 0.91007 0.89048 1.20557 1.01763 1.02983 0.89693 0.91699 0.91646 0.90684 0.89150 0.89118 0.91080 0.92028 0.90073 0.83812 0.76783 0.91771 0.90968 0.92033 0.91912 0.90872 0.91387 0.96064 0.96432 0.78282 0.93562 0.90741 0.92165 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.09 0.53 6.08 -4.04 -0.02 0.51 16 3 N -0.44 -4.09 2.68 -107.96 -0.29 -4.38 16 4 C 0.01 0.08 6.85 -81.86 -0.56 -0.48 16 5 C -0.08 -0.51 10.06 36.01 0.36 -0.15 16 6 C -0.16 -1.86 10.45 -37.50 -0.39 -2.25 16 7 C -0.23 -3.11 6.29 -103.35 -0.65 -3.76 16 8 C 0.59 9.15 7.81 -12.59 -0.10 9.05 16 9 O -0.56 -9.99 14.47 5.25 0.08 -9.92 16 10 N -0.71 -10.11 5.03 -53.84 -0.27 -10.39 16 11 C 0.15 2.27 2.90 -66.81 -0.19 2.07 16 12 H 0.09 1.58 7.09 -51.93 -0.37 1.21 16 13 C -0.13 -1.77 6.54 -25.07 -0.16 -1.93 16 14 C -0.13 -1.62 6.91 -24.74 -0.17 -1.79 16 15 C -0.11 -1.75 6.08 -25.07 -0.15 -1.90 16 16 C -0.10 -1.72 2.73 -89.50 -0.24 -1.96 16 17 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 18 C 0.16 3.42 5.31 -4.04 -0.02 3.39 16 19 N -0.73 -18.95 5.45 -59.91 -0.33 -19.28 16 20 C -0.24 -6.80 9.99 -15.06 -0.15 -6.96 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 23 N -0.94 -28.71 13.06 55.49 0.72 -27.98 16 24 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.10 1.22 6.89 -81.88 -0.56 0.65 16 29 C -0.09 -0.94 9.26 36.01 0.33 -0.60 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.41 7.51 -51.93 -0.39 0.02 16 34 H 0.09 0.36 6.90 -51.93 -0.36 0.00 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.29 6.94 -51.93 -0.36 -0.07 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.14 1.40 7.69 -52.49 -0.40 0.99 16 39 H 0.40 4.92 7.44 -40.82 -0.30 4.61 16 40 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.25 7.76 -51.93 -0.40 0.85 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.38 10.33 7.55 -40.82 -0.31 10.02 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 50 H 0.07 0.69 8.14 -51.94 -0.42 0.27 16 51 H 0.06 0.46 7.56 -51.93 -0.39 0.06 16 52 H 0.10 1.28 6.47 -51.93 -0.34 0.94 16 LS Contribution 413.70 15.07 6.23 6.23 Total: -1.00 -34.36 413.70 -10.33 -44.70 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -9.05 Total: 10.24 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.41 Total: -7.15 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.16 Total: -62.02 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.36 -10.33 -44.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568529771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.002 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds