Wall clock time and date at job start Tue Mar 31 2020 18:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46993 * 2 1 4 4 C 1.36444 * 124.84857 * 89.97673 * 3 2 1 5 5 C 1.50707 * 125.57396 * 0.02562 * 4 3 2 6 6 C 1.34492 * 108.85863 * 180.02562 * 4 3 2 7 7 C 1.46683 * 106.33021 * 359.97438 * 6 4 3 8 8 C 1.47259 * 126.94172 * 179.97438 * 7 6 4 9 9 O 1.21629 * 120.00099 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00141 * 0.02562 * 8 7 6 11 11 C 1.46505 * 120.00098 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.01257 * 33.61023 * 11 10 8 13 13 C 1.54263 * 110.07103 * 272.19209 * 11 10 8 14 14 C 1.54887 * 104.19705 * 264.30147 * 13 11 10 15 15 C 1.54897 * 102.74744 * 322.06277 * 14 13 11 16 16 C 1.53874 * 110.02911 * 154.99983 * 11 10 8 17 17 H 1.08994 * 110.03354 * 0.02562 * 16 11 10 18 18 C 1.53000 * 110.03037 * 238.61563 * 16 11 10 19 19 N 1.46499 * 109.46840 * 175.00175 * 18 16 11 20 20 C 1.36936 * 120.00002 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00140 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00367 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00444 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47261 * 59.99582 * 24 22 20 26 26 H 1.48502 * 109.47375 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46897 * 300.00142 * 24 22 20 28 28 C 1.34654 * 124.85566 * 270.28723 * 3 2 1 29 29 C 1.50705 * 125.80004 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.47411 * 299.99310 * 1 2 3 31 31 H 1.08995 * 109.47238 * 60.00093 * 1 2 3 32 32 H 1.09007 * 109.46675 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47411 * 240.00690 * 2 1 3 34 34 H 1.09000 * 109.47406 * 120.00335 * 2 1 3 35 35 H 1.08994 * 109.47040 * 270.00054 * 5 4 3 36 36 H 1.08998 * 109.46747 * 29.99932 * 5 4 3 37 37 H 1.08998 * 109.47015 * 149.99844 * 5 4 3 38 38 H 1.07997 * 126.83459 * 179.97438 * 6 4 3 39 39 H 0.97000 * 119.99616 * 0.02562 * 10 8 7 40 40 H 1.09001 * 110.49096 * 22.98347 * 13 11 10 41 41 H 1.09004 * 110.48173 * 145.49433 * 13 11 10 42 42 H 1.08998 * 110.75286 * 80.37381 * 14 13 11 43 43 H 1.08991 * 110.75720 * 203.56154 * 14 13 11 44 44 H 1.08998 * 110.48304 * 279.25794 * 15 14 13 45 45 H 1.09000 * 110.48408 * 156.62265 * 15 14 13 46 46 H 1.09002 * 109.47398 * 295.00502 * 18 16 11 47 47 H 1.09001 * 109.47194 * 55.00682 * 18 16 11 48 48 H 0.97000 * 120.00420 * 0.02562 * 19 18 16 49 49 H 0.96996 * 120.00586 * 180.02562 * 23 22 20 50 50 H 1.08988 * 109.47277 * 270.15880 * 29 28 3 51 51 H 1.09004 * 109.47029 * 30.16152 * 29 28 3 52 52 H 1.09003 * 109.46698 * 150.15364 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2777 2.1165 1.1198 5 6 2.1094 1.6404 2.5397 6 6 2.7083 3.3355 0.7493 7 6 2.7120 3.3435 -0.7175 8 6 3.1054 4.4583 -1.5956 9 8 3.0592 4.3263 -2.8038 10 7 3.5168 5.6248 -1.0604 11 6 3.9078 6.7341 -1.9339 12 1 3.3034 6.7254 -2.8409 13 6 5.4035 6.6223 -2.2943 14 6 6.1115 7.5394 -1.2664 15 6 5.1273 8.7282 -1.1341 16 6 3.7321 8.0730 -1.1962 17 1 3.3565 7.8974 -0.1882 18 6 2.7643 8.9730 -1.9670 19 7 2.5133 10.1933 -1.1962 20 6 1.6718 11.1541 -1.6899 21 1 1.1927 11.0121 -2.6475 22 6 1.4343 12.3106 -0.9599 23 7 2.0177 12.4835 0.2072 24 14 0.2858 13.6209 -1.6331 25 1 -1.0658 13.0392 -1.8332 26 1 0.2015 14.7478 -0.6696 27 1 0.8081 14.1172 -2.9316 28 6 2.2696 2.1086 -1.1050 29 6 2.0959 1.6405 -2.5269 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.0998 1.8677 2.8818 36 1 2.2741 0.5638 2.5838 37 1 2.8325 2.1452 3.1803 38 1 2.9943 4.1471 1.4019 39 1 3.5541 5.7299 -0.0968 40 1 5.7461 5.5931 -2.1868 41 1 5.5788 6.9776 -3.3098 42 1 6.2309 7.0286 -0.3109 43 1 7.0765 7.8737 -1.6472 44 1 5.2584 9.4257 -1.9614 45 1 5.2684 9.2358 -0.1799 46 1 3.2012 9.2353 -2.9306 47 1 1.8246 8.4440 -2.1260 48 1 2.9432 10.3207 -0.3360 49 1 1.8515 13.2914 0.7176 50 1 3.0218 1.1823 -2.8742 51 1 1.2890 0.9091 -2.5727 52 1 1.8511 2.4918 -3.1622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568529771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:03 Heat of formation + Delta-G solvation = -23.152162 kcal Electronic energy + Delta-G solvation = -28907.467700 eV Core-core repulsion = 25098.987681 eV Total energy + Delta-G solvation = -3808.480020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.46629 -40.77440 -38.96590 -36.31218 -35.07995 -34.40422 -33.56753 -33.25035 -30.52075 -30.18233 -30.00563 -28.61726 -26.45147 -25.72962 -24.59256 -23.83655 -22.79859 -21.69679 -21.12398 -20.55752 -19.63349 -19.00553 -17.91691 -17.42105 -16.83359 -16.50883 -16.34436 -16.13444 -15.83029 -15.49718 -15.26349 -15.11457 -14.94056 -14.56293 -14.38928 -14.34264 -14.09912 -13.99297 -13.69235 -13.47888 -13.36133 -13.19209 -13.16064 -12.88708 -12.79849 -12.56899 -12.47833 -12.45051 -12.24943 -12.19125 -12.09215 -11.92267 -11.86366 -11.71152 -11.62096 -11.45528 -10.93672 -10.77656 -10.01496 -9.50367 -9.00739 -8.91381 -7.95526 -5.24298 0.77107 1.44630 1.46185 1.49518 1.55690 1.83458 2.44965 2.56775 2.60880 3.37014 3.49688 3.70938 3.77470 3.78745 3.88883 3.92874 4.10115 4.12212 4.17920 4.29466 4.35207 4.42132 4.48686 4.50852 4.55317 4.61501 4.66355 4.68876 4.69753 4.76829 4.79314 4.81877 4.86269 4.95417 5.00547 5.02043 5.05156 5.09522 5.13644 5.19536 5.24331 5.26762 5.35008 5.37919 5.47272 5.51438 5.71009 5.85958 6.16065 6.26672 6.39100 6.73044 7.33357 7.41215 8.07584 8.34134 9.27670 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002449 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.044106 B =11430.284929 C =12158.747926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.086 3.914 3 N -0.433 5.433 4 C 0.015 3.985 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.267 4.267 8 C 0.585 3.415 9 O -0.590 6.590 10 N -0.708 5.708 11 C 0.155 3.845 12 H 0.067 0.933 13 C -0.122 4.122 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.090 4.090 17 H 0.076 0.924 18 C 0.163 3.837 19 N -0.739 5.739 20 C -0.250 4.250 21 H 0.070 0.930 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.973 3.027 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.097 3.903 29 C -0.088 4.088 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.407 0.593 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.005 0.995 48 H 0.377 0.623 49 H 0.253 0.747 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -30.991 3.872 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.034 4.034 3 N -0.110 5.110 4 C -0.094 4.094 5 C -0.138 4.138 6 C -0.210 4.210 7 C -0.276 4.276 8 C 0.376 3.624 9 O -0.473 6.473 10 N -0.358 5.358 11 C 0.049 3.951 12 H 0.085 0.915 13 C -0.161 4.161 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.110 4.110 17 H 0.095 0.905 18 C 0.036 3.964 19 N -0.382 5.382 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.802 3.198 25 H -0.206 1.206 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.022 4.022 29 C -0.145 4.145 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.170 0.830 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.023 0.977 48 H 0.209 0.791 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.104 0.896 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.360 -31.344 2.944 31.661 hybrid contribution -0.638 1.451 0.287 1.610 sum 2.722 -29.893 3.231 30.190 Atomic orbital electron populations 1.22149 0.93695 1.04246 1.02363 1.22218 0.96065 0.78841 1.06256 1.43900 1.49953 1.12841 1.04261 1.20700 1.06432 0.92132 0.90100 1.20426 1.03606 1.02323 0.87397 1.21989 1.08555 0.98152 0.92295 1.20170 1.18144 0.95192 0.94143 1.17730 0.75460 0.82268 0.86917 1.90681 1.57152 1.83296 1.16145 1.45835 1.67176 1.12349 1.10452 1.21398 0.96279 0.84426 0.92954 0.91493 1.22669 0.93422 1.00147 0.99860 1.22459 0.98059 0.94943 0.99266 1.22295 0.92927 0.97642 1.01814 1.22050 0.96479 0.93253 0.99173 0.90533 1.20813 0.95112 0.86573 0.93889 1.42460 1.55032 1.18150 1.22529 1.19573 1.18977 0.97454 1.02186 0.91227 1.25543 1.02793 1.00680 0.97432 1.69796 1.48826 1.28511 1.14587 0.85219 0.78817 0.78537 0.77229 1.20614 1.21724 1.20390 1.20453 1.00456 0.90989 0.90252 1.20496 1.03036 1.02435 0.88526 0.92398 0.93223 0.88255 0.87829 0.86752 0.90380 0.89960 0.89256 0.83008 0.75695 0.91419 0.90827 0.90490 0.90111 0.92472 0.91847 0.96246 0.97673 0.79095 0.93860 0.90027 0.89566 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 71.98 0.74 -0.56 16 2 C 0.09 0.72 6.08 86.38 0.53 1.24 16 3 N -0.43 -7.33 2.68 -495.47 -1.33 -8.66 16 4 C 0.01 0.26 6.85 40.99 0.28 0.54 16 5 C -0.08 -0.77 10.06 71.24 0.72 -0.05 16 6 C -0.19 -4.13 10.45 23.62 0.25 -3.89 16 7 C -0.27 -7.28 6.29 -19.04 -0.12 -7.40 16 8 C 0.59 18.79 7.81 86.61 0.68 19.47 16 9 O -0.59 -22.29 14.47 -4.12 -0.06 -22.35 16 10 N -0.71 -20.51 5.03 -442.51 -2.23 -22.74 16 11 C 0.16 4.84 2.90 45.71 0.13 4.97 16 12 H 0.07 2.44 7.09 -2.39 -0.02 2.42 16 13 C -0.12 -3.28 6.54 31.67 0.21 -3.07 16 14 C -0.11 -2.66 6.91 31.89 0.22 -2.44 16 15 C -0.11 -3.41 6.08 31.67 0.19 -3.21 16 16 C -0.09 -3.08 2.73 -10.07 -0.03 -3.11 16 17 H 0.08 2.62 7.62 -2.39 -0.02 2.61 16 18 C 0.16 7.12 5.31 86.38 0.46 7.58 16 19 N -0.74 -39.26 5.45 -343.45 -1.87 -41.14 16 20 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 21 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 24 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 28 C 0.10 2.23 6.89 41.78 0.29 2.51 16 29 C -0.09 -1.76 9.26 71.24 0.66 -1.10 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.55 8.11 -2.39 -0.02 0.53 16 32 H 0.10 0.30 8.14 -2.38 -0.02 0.29 16 33 H 0.10 0.63 7.51 -2.39 -0.02 0.61 16 34 H 0.11 0.46 6.90 -2.39 -0.02 0.44 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.46 6.94 -2.39 -0.02 0.45 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.15 2.90 7.69 -2.91 -0.02 2.87 16 39 H 0.41 10.15 7.44 -92.71 -0.69 9.46 16 40 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.97 7.76 -2.39 -0.02 1.95 16 45 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 47 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.38 20.81 7.55 -92.71 -0.70 20.11 16 49 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.09 1.20 7.56 -2.38 -0.02 1.19 16 52 H 0.07 1.95 6.47 -2.39 -0.02 1.93 16 Total: -1.00 -75.64 413.70 2.85 -72.79 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -0.48 Total: 38.50 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 6.50 Total: -6.09 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -5.14 Total: -132.27 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.64 2.85 -72.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568529771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.637 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds