Wall clock time and date at job start Tue Mar 31 2020 18:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.46923 * 2 1 4 4 C 1.36450 * 124.84977 * 89.97769 * 3 2 1 5 5 C 1.50706 * 125.56907 * 0.04613 * 4 3 2 6 6 C 1.34488 * 108.85977 * 180.02562 * 4 3 2 7 7 C 1.46688 * 106.33058 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94223 * 179.97438 * 7 6 4 9 9 O 1.21621 * 119.99988 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99716 * 0.03508 * 8 7 6 11 11 C 1.46497 * 119.99893 * 179.97438 * 10 8 7 12 12 H 1.09009 * 110.53523 * 327.60877 * 11 10 8 13 13 C 1.54892 * 110.49111 * 90.21954 * 11 10 8 14 14 C 1.54884 * 102.75057 * 156.62275 * 13 11 10 15 15 C 1.54270 * 104.19362 * 322.05925 * 14 13 11 16 16 C 1.53875 * 106.59905 * 23.61130 * 15 14 13 17 17 H 1.09002 * 110.02866 * 240.66413 * 16 15 14 18 18 C 1.53001 * 110.02758 * 119.28733 * 16 15 14 19 19 N 1.46496 * 109.47205 * 66.45429 * 18 16 15 20 20 C 1.36945 * 119.99718 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.34661 * 124.85668 * 270.31382 * 3 2 1 29 29 C 1.50701 * 125.80054 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47808 * 59.99786 * 1 2 3 31 31 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47135 * 299.99281 * 1 2 3 33 33 H 1.09003 * 109.46696 * 240.00582 * 2 1 3 34 34 H 1.08994 * 109.47528 * 120.00642 * 2 1 3 35 35 H 1.08996 * 109.46999 * 269.99999 * 5 4 3 36 36 H 1.09000 * 109.47195 * 29.99467 * 5 4 3 37 37 H 1.08997 * 109.47221 * 149.99703 * 5 4 3 38 38 H 1.07994 * 126.83136 * 180.02562 * 6 4 3 39 39 H 0.96996 * 120.00067 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.75015 * 38.30285 * 13 11 10 41 41 H 1.09000 * 110.75351 * 274.93669 * 13 11 10 42 42 H 1.08998 * 110.48629 * 203.37970 * 14 13 11 43 43 H 1.08997 * 110.48525 * 80.73757 * 14 13 11 44 44 H 1.09003 * 110.02901 * 264.32349 * 15 14 13 45 45 H 1.09003 * 110.06841 * 142.92028 * 15 14 13 46 46 H 1.08997 * 109.46922 * 306.44471 * 18 16 15 47 47 H 1.09000 * 109.46483 * 186.45290 * 18 16 15 48 48 H 0.96996 * 120.00499 * 359.97438 * 19 18 16 49 49 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.47161 * 270.19518 * 29 28 3 51 51 H 1.09007 * 109.46808 * 30.18830 * 29 28 3 52 52 H 1.08996 * 109.47440 * 150.18956 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2777 2.1165 1.1198 5 6 2.1098 1.6401 2.5397 6 6 2.7082 3.3355 0.7493 7 6 2.7107 3.3439 -0.7176 8 6 3.1037 4.4589 -1.5956 9 8 3.0564 4.3273 -2.8037 10 7 3.5160 5.6251 -1.0603 11 6 3.9075 6.7341 -1.9337 12 1 4.3539 6.3569 -2.8540 13 6 2.6855 7.6311 -2.2520 14 6 3.3417 8.9857 -2.6172 15 6 4.5284 9.1071 -1.6389 16 6 4.8881 7.6755 -1.2045 17 1 4.7729 7.5727 -0.1254 18 6 6.3270 7.3505 -1.6108 19 7 7.2518 8.1920 -0.8474 20 6 8.6024 8.0769 -1.0429 21 1 8.9855 7.3655 -1.7594 22 6 9.4787 8.8745 -0.3200 23 7 9.0116 9.7412 0.5537 24 14 11.3209 8.7170 -0.5860 25 1 11.8704 7.6996 0.3457 26 1 11.5849 8.2996 -1.9865 27 1 11.9719 10.0267 -0.3288 28 6 2.2690 2.1088 -1.1050 29 6 2.0948 1.6410 -2.5269 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.1002 1.8672 2.8820 36 1 2.2748 0.5636 2.5837 37 1 2.8328 2.1450 3.1802 38 1 2.9950 4.1468 1.4019 39 1 3.5535 5.7301 -0.0968 40 1 2.0447 7.7357 -1.3764 41 1 2.1243 7.2334 -3.0975 42 1 2.6374 9.8038 -2.4660 43 1 3.6966 8.9722 -3.6476 44 1 4.2376 9.6989 -0.7709 45 1 5.3791 9.5707 -2.1385 46 1 6.4558 7.5424 -2.6760 47 1 6.5349 6.3009 -1.4029 48 1 6.9077 8.8307 -0.2036 49 1 9.6241 10.2984 1.0590 50 1 3.0205 1.1822 -2.8745 51 1 1.2876 0.9099 -2.5725 52 1 1.8503 2.4923 -3.1622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568529774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:15 Heat of formation + Delta-G solvation = -3.736806 kcal Electronic energy + Delta-G solvation = -28926.136771 eV Core-core repulsion = 25118.498664 eV Total energy + Delta-G solvation = -3807.638107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66054 -39.47343 -37.67880 -34.42694 -34.35523 -33.34322 -32.79077 -31.29486 -29.78000 -29.32761 -28.44277 -27.40064 -25.05923 -24.32935 -23.87154 -22.23382 -21.77947 -20.48654 -20.06968 -19.41762 -18.51745 -17.19200 -16.90338 -16.15100 -15.91256 -15.60488 -14.99776 -14.69640 -14.52595 -14.33103 -14.13168 -13.73818 -13.49715 -13.40451 -13.34689 -13.23620 -13.12127 -12.96786 -12.74279 -12.67146 -12.57109 -12.31584 -12.02144 -11.86793 -11.74466 -11.66766 -11.49752 -11.19185 -10.83631 -10.72840 -10.67502 -10.44981 -10.34085 -10.06027 -9.87094 -9.65516 -9.55501 -8.82651 -8.80186 -8.59473 -8.07126 -6.84206 -5.70424 -2.98115 1.74716 2.26440 2.54635 3.47917 3.52931 3.54793 3.58558 3.71899 4.22475 4.42797 4.52235 4.62778 4.64558 4.72830 4.85150 4.95177 4.98245 5.06330 5.08472 5.13222 5.23259 5.26089 5.31063 5.47650 5.50396 5.56660 5.60159 5.63329 5.66553 5.73237 5.77177 5.79793 5.86375 5.89621 5.96643 6.06692 6.15650 6.18788 6.32452 6.41508 6.47316 6.62654 6.70164 6.73220 6.79532 6.91840 6.97158 7.06838 7.11457 7.76958 7.86680 8.49052 8.58388 9.60145 10.18932 10.54287 11.52621 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.002573 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.894954 B =10880.217335 C =12004.479205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.009 3.991 5 C -0.082 4.082 6 C -0.164 4.164 7 C -0.231 4.231 8 C 0.592 3.408 9 O -0.556 6.556 10 N -0.714 5.714 11 C 0.149 3.851 12 H 0.096 0.904 13 C -0.131 4.131 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.102 4.102 17 H 0.075 0.925 18 C 0.161 3.839 19 N -0.731 5.731 20 C -0.235 4.235 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.282 1.282 27 H -0.292 1.292 28 C 0.104 3.896 29 C -0.093 4.093 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.399 0.601 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.021 0.979 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.806 -18.373 0.841 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.116 5.116 4 C -0.099 4.099 5 C -0.140 4.140 6 C -0.188 4.188 7 C -0.240 4.240 8 C 0.381 3.619 9 O -0.436 6.436 10 N -0.364 5.364 11 C 0.044 3.956 12 H 0.114 0.886 13 C -0.170 4.170 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.122 4.122 17 H 0.093 0.907 18 C 0.033 3.967 19 N -0.375 5.375 20 C -0.366 4.366 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.208 1.208 27 H -0.218 1.218 28 C -0.012 4.012 29 C -0.150 4.150 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.162 0.838 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.038 0.962 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.078 0.922 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.771 -18.845 -0.052 28.794 hybrid contribution 1.046 0.188 0.793 1.326 sum -20.725 -18.657 0.740 27.895 Atomic orbital electron populations 1.22165 0.94236 1.02988 1.03360 1.21852 0.95637 0.80814 1.04465 1.43615 1.51220 1.11670 1.05112 1.20160 1.08478 0.92642 0.88596 1.20317 1.02799 1.01082 0.89788 1.21803 1.06876 0.96889 0.93193 1.20124 1.15755 0.95005 0.93165 1.17319 0.76092 0.81466 0.86980 1.90703 1.55411 1.82823 1.14694 1.45827 1.67354 1.13013 1.10167 1.21867 0.94139 0.85478 0.94151 0.88644 1.22850 0.97451 0.95499 1.01228 1.22316 0.97403 0.96521 0.99765 1.22127 0.98188 0.95987 0.98965 1.22176 0.95596 0.94412 0.99981 0.90714 1.20729 0.86978 0.94159 0.94826 1.42354 1.02352 1.45166 1.47643 1.19245 0.82816 1.16604 1.17949 0.91291 1.24718 0.97893 0.99146 0.99389 1.69663 1.33449 1.26640 1.28655 0.86199 0.85728 0.76768 0.77591 1.21819 1.20796 1.21822 1.20241 1.00985 0.90949 0.89043 1.20556 1.01855 1.02891 0.89679 0.91730 0.90696 0.91761 0.89118 0.89078 0.91204 0.91988 0.89981 0.83779 0.76670 0.91538 0.91576 0.91911 0.91619 0.91974 0.90294 0.96160 0.96464 0.78270 0.93626 0.90623 0.92223 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.24 37.16 0.38 -0.44 16 2 C 0.09 0.55 6.08 -4.05 -0.02 0.52 16 3 N -0.44 -4.20 2.69 -107.96 -0.29 -4.49 16 4 C 0.01 0.09 6.85 -81.86 -0.56 -0.48 16 5 C -0.08 -0.54 10.06 36.01 0.36 -0.18 16 6 C -0.16 -1.91 10.45 -37.50 -0.39 -2.30 16 7 C -0.23 -3.17 6.29 -103.35 -0.65 -3.82 16 8 C 0.59 9.29 7.81 -12.59 -0.10 9.19 16 9 O -0.56 -10.06 14.46 5.26 0.08 -9.98 16 10 N -0.71 -10.29 5.15 -53.32 -0.27 -10.57 16 11 C 0.15 2.27 2.75 -66.27 -0.18 2.09 16 12 H 0.10 1.65 7.27 -51.92 -0.38 1.27 16 13 C -0.13 -1.77 6.58 -24.74 -0.16 -1.93 16 14 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 15 C -0.11 -1.83 6.13 -25.61 -0.16 -1.98 16 16 C -0.10 -1.72 2.71 -89.50 -0.24 -1.96 16 17 H 0.07 1.25 7.73 -51.93 -0.40 0.85 16 18 C 0.16 3.41 5.29 -4.04 -0.02 3.39 16 19 N -0.73 -18.94 5.34 -59.91 -0.32 -19.26 16 20 C -0.23 -6.77 9.99 -15.06 -0.15 -6.92 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 24 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 C 0.10 1.24 6.89 -81.88 -0.56 0.68 16 29 C -0.09 -0.95 9.26 36.01 0.33 -0.61 16 30 H 0.06 0.38 8.11 -51.93 -0.42 -0.05 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.45 7.51 -51.93 -0.39 0.06 16 34 H 0.09 0.40 6.90 -51.93 -0.36 0.04 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.33 6.94 -51.93 -0.36 -0.04 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.14 1.46 7.69 -52.49 -0.40 1.06 16 39 H 0.40 5.07 7.49 -40.82 -0.31 4.77 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.38 10.32 7.50 -40.82 -0.31 10.01 16 49 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.06 0.45 7.56 -51.92 -0.39 0.05 16 52 H 0.10 1.24 6.47 -51.93 -0.34 0.91 16 LS Contribution 413.87 15.07 6.24 6.24 Total: -1.00 -34.36 413.87 -10.33 -44.69 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -9.07 Total: 10.50 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.40 Total: -7.11 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.16 Total: -62.26 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.36 -10.33 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568529774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.953 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds