Wall clock time and date at job start Tue Mar 31 2020 18:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.46923 * 2 1 4 4 C 1.36450 * 124.84977 * 89.97769 * 3 2 1 5 5 C 1.50706 * 125.56907 * 0.04613 * 4 3 2 6 6 C 1.34488 * 108.85977 * 180.02562 * 4 3 2 7 7 C 1.46688 * 106.33058 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94223 * 179.97438 * 7 6 4 9 9 O 1.21621 * 119.99988 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99716 * 0.03508 * 8 7 6 11 11 C 1.46497 * 119.99893 * 179.97438 * 10 8 7 12 12 H 1.09009 * 110.53523 * 327.60877 * 11 10 8 13 13 C 1.54892 * 110.49111 * 90.21954 * 11 10 8 14 14 C 1.54884 * 102.75057 * 156.62275 * 13 11 10 15 15 C 1.54270 * 104.19362 * 322.05925 * 14 13 11 16 16 C 1.53875 * 106.59905 * 23.61130 * 15 14 13 17 17 H 1.09002 * 110.02866 * 240.66413 * 16 15 14 18 18 C 1.53001 * 110.02758 * 119.28733 * 16 15 14 19 19 N 1.46496 * 109.47205 * 66.45429 * 18 16 15 20 20 C 1.36945 * 119.99718 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.34661 * 124.85668 * 270.31382 * 3 2 1 29 29 C 1.50701 * 125.80054 * 0.02562 * 28 3 2 30 30 H 1.08997 * 109.47808 * 59.99786 * 1 2 3 31 31 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47135 * 299.99281 * 1 2 3 33 33 H 1.09003 * 109.46696 * 240.00582 * 2 1 3 34 34 H 1.08994 * 109.47528 * 120.00642 * 2 1 3 35 35 H 1.08996 * 109.46999 * 269.99999 * 5 4 3 36 36 H 1.09000 * 109.47195 * 29.99467 * 5 4 3 37 37 H 1.08997 * 109.47221 * 149.99703 * 5 4 3 38 38 H 1.07994 * 126.83136 * 180.02562 * 6 4 3 39 39 H 0.96996 * 120.00067 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.75015 * 38.30285 * 13 11 10 41 41 H 1.09000 * 110.75351 * 274.93669 * 13 11 10 42 42 H 1.08998 * 110.48629 * 203.37970 * 14 13 11 43 43 H 1.08997 * 110.48525 * 80.73757 * 14 13 11 44 44 H 1.09003 * 110.02901 * 264.32349 * 15 14 13 45 45 H 1.09003 * 110.06841 * 142.92028 * 15 14 13 46 46 H 1.08997 * 109.46922 * 306.44471 * 18 16 15 47 47 H 1.09000 * 109.46483 * 186.45290 * 18 16 15 48 48 H 0.96996 * 120.00499 * 359.97438 * 19 18 16 49 49 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.47161 * 270.19518 * 29 28 3 51 51 H 1.09007 * 109.46808 * 30.18830 * 29 28 3 52 52 H 1.08996 * 109.47440 * 150.18956 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2777 2.1165 1.1198 5 6 2.1098 1.6401 2.5397 6 6 2.7082 3.3355 0.7493 7 6 2.7107 3.3439 -0.7176 8 6 3.1037 4.4589 -1.5956 9 8 3.0564 4.3273 -2.8037 10 7 3.5160 5.6251 -1.0603 11 6 3.9075 6.7341 -1.9337 12 1 4.3539 6.3569 -2.8540 13 6 2.6855 7.6311 -2.2520 14 6 3.3417 8.9857 -2.6172 15 6 4.5284 9.1071 -1.6389 16 6 4.8881 7.6755 -1.2045 17 1 4.7729 7.5727 -0.1254 18 6 6.3270 7.3505 -1.6108 19 7 7.2518 8.1920 -0.8474 20 6 8.6024 8.0769 -1.0429 21 1 8.9855 7.3655 -1.7594 22 6 9.4787 8.8745 -0.3200 23 7 9.0116 9.7412 0.5537 24 14 11.3209 8.7170 -0.5860 25 1 11.8704 7.6996 0.3457 26 1 11.5849 8.2996 -1.9865 27 1 11.9719 10.0267 -0.3288 28 6 2.2690 2.1088 -1.1050 29 6 2.0948 1.6410 -2.5269 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.1002 1.8672 2.8820 36 1 2.2748 0.5636 2.5837 37 1 2.8328 2.1450 3.1802 38 1 2.9950 4.1468 1.4019 39 1 3.5535 5.7301 -0.0968 40 1 2.0447 7.7357 -1.3764 41 1 2.1243 7.2334 -3.0975 42 1 2.6374 9.8038 -2.4660 43 1 3.6966 8.9722 -3.6476 44 1 4.2376 9.6989 -0.7709 45 1 5.3791 9.5707 -2.1385 46 1 6.4558 7.5424 -2.6760 47 1 6.5349 6.3009 -1.4029 48 1 6.9077 8.8307 -0.2036 49 1 9.6241 10.2984 1.0590 50 1 3.0205 1.1822 -2.8745 51 1 1.2876 0.9099 -2.5725 52 1 1.8503 2.4923 -3.1622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568529774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:14 Heat of formation + Delta-G solvation = -24.193426 kcal Electronic energy + Delta-G solvation = -28927.023836 eV Core-core repulsion = 25118.498664 eV Total energy + Delta-G solvation = -3808.525172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.46509 -40.71173 -38.99527 -36.28981 -35.09711 -34.51807 -33.57172 -33.27755 -30.52198 -30.16414 -30.00847 -28.52889 -26.41585 -25.71514 -24.56755 -23.91700 -22.77164 -21.61402 -21.25759 -20.56518 -19.61450 -19.05964 -17.96649 -17.38244 -16.78651 -16.61275 -16.39847 -16.02218 -15.79266 -15.47189 -15.22429 -15.11424 -14.96761 -14.54674 -14.39269 -14.17551 -14.05752 -13.99272 -13.70810 -13.51877 -13.46039 -13.17677 -13.13534 -13.01529 -12.88013 -12.79598 -12.49688 -12.37851 -12.25422 -12.13263 -12.08869 -11.93676 -11.86906 -11.72141 -11.62375 -11.28969 -10.94821 -10.79752 -9.99553 -9.50317 -9.00931 -8.91717 -7.95985 -5.24708 0.76870 1.44377 1.45850 1.47660 1.56389 1.83151 2.45479 2.55361 2.60734 3.36758 3.49481 3.71869 3.77341 3.78444 3.88589 3.90965 4.10751 4.13380 4.20612 4.28767 4.35515 4.42129 4.50710 4.52296 4.52534 4.55457 4.63445 4.68176 4.68871 4.76291 4.77645 4.81550 4.86647 4.95121 4.97979 5.03862 5.05514 5.13306 5.17153 5.20435 5.24723 5.28371 5.35382 5.38465 5.46256 5.49063 5.70388 5.85613 6.15756 6.26396 6.38900 6.72308 7.33065 7.40489 8.07190 8.33995 9.27257 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.002573 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.894954 B =10880.217335 C =12004.479205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.433 5.433 4 C 0.015 3.985 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.267 4.267 8 C 0.586 3.414 9 O -0.589 6.589 10 N -0.710 5.710 11 C 0.154 3.846 12 H 0.072 0.928 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.090 4.090 17 H 0.078 0.922 18 C 0.164 3.836 19 N -0.738 5.738 20 C -0.248 4.248 21 H 0.068 0.932 22 C -0.072 4.072 23 N -0.966 5.966 24 Si 0.973 3.027 25 H -0.286 1.286 26 H -0.273 1.273 27 H -0.291 1.291 28 C 0.097 3.903 29 C -0.088 4.088 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.151 0.849 39 H 0.407 0.593 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.014 0.986 47 H 0.006 0.994 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.019 -20.097 1.742 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.035 4.035 3 N -0.109 5.109 4 C -0.094 4.094 5 C -0.137 4.137 6 C -0.211 4.211 7 C -0.277 4.277 8 C 0.377 3.623 9 O -0.472 6.472 10 N -0.359 5.359 11 C 0.049 3.951 12 H 0.090 0.910 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.110 4.110 17 H 0.096 0.904 18 C 0.037 3.963 19 N -0.381 5.381 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.264 4.264 23 N -0.616 5.616 24 Si 0.802 3.198 25 H -0.213 1.213 26 H -0.198 1.198 27 H -0.217 1.217 28 C -0.021 4.021 29 C -0.145 4.145 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.169 0.831 39 H 0.243 0.757 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.024 0.976 48 H 0.209 0.791 49 H 0.061 0.939 50 H 0.094 0.906 51 H 0.107 0.893 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.007 -20.602 0.856 30.894 hybrid contribution 1.394 0.626 0.518 1.613 sum -21.613 -19.976 1.375 29.463 Atomic orbital electron populations 1.22133 0.93263 1.04276 1.02534 1.22223 0.96401 0.78816 1.06092 1.43898 1.50000 1.12792 1.04249 1.20694 1.06510 0.92062 0.90116 1.20424 1.03731 1.02207 0.87383 1.21987 1.08399 0.98320 0.92364 1.20173 1.18049 0.95339 0.94102 1.17712 0.75599 0.82036 0.86908 1.90672 1.57046 1.83422 1.16091 1.45761 1.67008 1.12661 1.10477 1.21690 0.94672 0.85676 0.93077 0.90988 1.22769 0.96526 0.94770 1.01824 1.22275 0.96609 0.97239 0.98906 1.22064 0.98306 0.94887 0.99730 1.22030 0.93025 0.95670 1.00241 0.90390 1.20782 0.88970 0.92662 0.93874 1.42478 1.02225 1.45535 1.47887 1.19585 0.84320 1.16393 1.17722 0.91375 1.25535 1.02353 0.99109 0.99446 1.69807 1.34795 1.27471 1.29577 0.85154 0.80233 0.76601 0.77858 1.21301 1.19789 1.21748 1.20460 1.00493 0.90898 0.90274 1.20501 1.02898 1.02584 0.88495 0.92947 0.88333 0.92184 0.88035 0.87021 0.89852 0.90150 0.89612 0.83133 0.75703 0.90110 0.91507 0.89483 0.91668 0.91126 0.93018 0.96810 0.97643 0.79054 0.93869 0.90581 0.89303 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.24 71.98 0.74 -0.40 16 2 C 0.08 0.75 6.08 86.38 0.53 1.27 16 3 N -0.43 -7.58 2.69 -495.49 -1.33 -8.91 16 4 C 0.01 0.27 6.85 40.98 0.28 0.55 16 5 C -0.08 -0.83 10.06 71.24 0.72 -0.12 16 6 C -0.19 -4.32 10.45 23.62 0.25 -4.07 16 7 C -0.27 -7.46 6.29 -19.04 -0.12 -7.58 16 8 C 0.59 19.10 7.81 86.61 0.68 19.77 16 9 O -0.59 -22.34 14.46 -4.10 -0.06 -22.40 16 10 N -0.71 -20.96 5.15 -440.86 -2.27 -23.23 16 11 C 0.15 4.81 2.75 46.07 0.13 4.94 16 12 H 0.07 2.61 7.27 -2.38 -0.02 2.59 16 13 C -0.12 -3.13 6.58 31.88 0.21 -2.92 16 14 C -0.11 -2.87 6.83 31.67 0.22 -2.65 16 15 C -0.11 -3.55 6.13 31.32 0.19 -3.36 16 16 C -0.09 -3.08 2.71 -10.07 -0.03 -3.11 16 17 H 0.08 2.62 7.73 -2.39 -0.02 2.61 16 18 C 0.16 7.19 5.29 86.38 0.46 7.65 16 19 N -0.74 -39.23 5.34 -343.47 -1.83 -41.06 16 20 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 21 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.97 -59.91 13.06 21.65 0.28 -59.62 16 24 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 C 0.10 2.28 6.89 41.78 0.29 2.57 16 29 C -0.09 -1.78 9.26 71.24 0.66 -1.12 16 30 H 0.05 0.50 8.11 -2.39 -0.02 0.48 16 31 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.71 7.51 -2.39 -0.02 0.69 16 34 H 0.11 0.56 6.90 -2.39 -0.02 0.55 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.55 6.94 -2.39 -0.02 0.54 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.15 3.05 7.69 -2.91 -0.02 3.03 16 39 H 0.41 10.53 7.49 -92.71 -0.69 9.83 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 46 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.38 20.80 7.50 -92.71 -0.70 20.11 16 49 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 50 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.09 1.20 7.56 -2.38 -0.02 1.19 16 52 H 0.08 1.99 6.47 -2.39 -0.02 1.98 16 Total: -1.00 -75.56 413.87 2.83 -72.73 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.48 Total: 39.10 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 6.49 Total: -6.06 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -5.15 Total: -132.82 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -75.56 2.83 -72.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568529774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.536 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds