Wall clock time and date at job start Tue Mar 31 2020 18:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46996 * 2 1 4 4 C 1.46505 * 120.00021 * 269.99413 * 3 2 1 5 5 C 1.52993 * 109.47544 * 270.00189 * 4 3 2 6 6 C 1.39043 * 119.99968 * 90.00335 * 3 2 1 7 7 C 1.39221 * 119.93222 * 179.97438 * 6 3 2 8 8 C 1.37607 * 120.06878 * 179.97438 * 7 6 3 9 9 C 1.39799 * 119.93247 * 0.02562 * 8 7 6 10 10 C 1.47521 * 120.06765 * 180.02562 * 9 8 7 11 11 O 1.21598 * 120.00158 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99735 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99720 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47357 * 325.00091 * 13 12 10 15 15 C 1.53000 * 109.47086 * 85.00007 * 13 12 10 16 16 C 1.52999 * 109.47016 * 205.00004 * 13 12 10 17 17 N 1.46500 * 109.47454 * 55.00143 * 16 13 12 18 18 C 1.46504 * 119.99793 * 270.00080 * 17 16 13 19 19 C 1.36934 * 120.00137 * 89.99686 * 17 16 13 20 20 H 1.08002 * 119.99636 * 23.67334 * 19 17 16 21 21 C 1.38816 * 120.00236 * 203.67294 * 19 17 16 22 22 N 1.31623 * 119.99603 * 11.23723 * 21 19 17 23 23 Si 1.86792 * 119.99973 * 191.23387 * 21 19 17 24 24 H 1.48504 * 109.47424 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47011 * 120.00451 * 23 21 19 26 26 H 1.48501 * 109.46865 * 239.99942 * 23 21 19 27 27 C 1.39795 * 119.85989 * 0.27851 * 9 8 7 28 28 C 1.37607 * 119.93105 * 359.42179 * 27 9 8 29 29 H 1.09004 * 109.46832 * 59.99678 * 1 2 3 30 30 H 1.08995 * 109.46787 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46824 * 300.00109 * 1 2 3 32 32 H 1.09005 * 109.47362 * 240.00135 * 2 1 3 33 33 H 1.09004 * 109.47253 * 119.99989 * 2 1 3 34 34 H 1.08997 * 109.46857 * 30.00536 * 4 3 2 35 35 H 1.09005 * 109.46550 * 150.00004 * 4 3 2 36 36 H 1.09010 * 109.46920 * 60.00420 * 5 4 3 37 37 H 1.08995 * 109.47507 * 179.97438 * 5 4 3 38 38 H 1.09003 * 109.47372 * 300.00508 * 5 4 3 39 39 H 1.07998 * 119.96356 * 0.02735 * 7 6 3 40 40 H 1.08006 * 120.03395 * 180.02562 * 8 7 6 41 41 H 0.97001 * 119.99804 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.46902 * 59.99766 * 15 13 12 43 43 H 1.09001 * 109.47334 * 299.99734 * 15 13 12 44 44 H 1.09003 * 109.47348 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.47658 * 175.00167 * 16 13 12 46 46 H 1.09004 * 109.47017 * 294.99795 * 16 13 12 47 47 H 1.09003 * 109.46880 * 94.61757 * 18 17 16 48 48 H 1.08998 * 109.47141 * 214.61575 * 18 17 16 49 49 H 1.08999 * 109.47668 * 334.62391 * 18 17 16 50 50 H 0.96993 * 119.99796 * 180.02562 * 22 21 19 51 51 H 1.08002 * 120.03170 * 179.72084 * 27 9 8 52 52 H 1.07994 * 119.96589 * 180.29795 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8315 -1.7104 6 6 2.2501 2.0367 1.2041 7 6 2.7147 3.3491 1.2025 8 6 2.9445 4.0006 2.3926 9 6 2.7116 3.3431 3.6041 10 6 2.9564 4.0389 4.8817 11 8 3.3608 5.1857 4.8817 12 7 2.7319 3.4035 6.0489 13 6 2.9745 4.0947 7.3176 14 1 3.8330 4.7578 7.2117 15 6 1.7398 4.9153 7.6955 16 6 3.2574 3.0650 8.4133 17 7 4.3653 2.2013 7.9975 18 6 4.0939 0.9700 7.2515 19 6 5.6544 2.5448 8.3061 20 1 5.8536 3.1978 9.1430 21 6 6.7052 2.0538 7.5434 22 7 6.4616 1.4453 6.4020 23 14 8.4647 2.2569 8.1368 24 1 8.4686 2.9699 9.4395 25 1 9.0884 0.9195 8.3031 26 1 9.2357 3.0422 7.1398 27 6 2.2512 2.0231 3.6024 28 6 2.0173 1.3791 2.4090 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1411 -1.1384 36 1 3.8745 0.7621 -1.8408 37 1 3.8892 2.3449 -2.6545 38 1 4.3884 2.2155 -0.9507 39 1 2.8940 3.8566 0.2662 40 1 3.3045 5.0189 2.3907 41 1 2.4096 2.4886 6.0488 42 1 0.8812 4.2522 7.8014 43 1 1.5382 5.6489 6.9149 44 1 1.9201 5.4293 8.6397 45 1 3.5250 3.5802 9.3358 46 1 2.3672 2.4588 8.5808 47 1 4.1807 1.1661 6.1828 48 1 4.8139 0.2042 7.5400 49 1 3.0852 0.6235 7.4764 50 1 7.1958 1.1019 5.8692 51 1 2.0746 1.5110 4.5367 52 1 1.6571 0.3610 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569149240.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:24 Heat of formation + Delta-G solvation = 17.199917 kcal Electronic energy + Delta-G solvation = -29650.928057 eV Core-core repulsion = 25844.197835 eV Total energy + Delta-G solvation = -3806.730222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.98035 -38.83891 -36.69064 -35.99073 -33.90949 -32.74610 -31.66371 -30.84106 -30.50097 -29.80118 -27.87688 -26.11481 -25.53576 -24.22007 -23.84534 -22.01902 -21.73442 -20.91131 -20.07174 -19.44838 -17.91515 -16.73566 -16.68089 -16.22374 -15.39155 -14.97430 -14.80387 -14.59896 -14.34937 -14.11598 -13.84495 -13.63451 -13.56729 -13.35155 -13.16483 -13.04129 -12.80782 -12.72286 -12.38771 -12.26443 -12.07626 -12.00212 -11.87128 -11.75477 -11.36459 -11.33295 -11.21157 -11.00985 -10.80230 -10.71529 -10.59013 -10.47290 -10.12557 -9.88183 -9.79599 -9.76202 -9.16315 -8.78458 -8.52627 -8.22560 -7.25298 -6.67302 -5.66257 -3.12352 1.40174 1.66398 2.94422 3.42524 3.47618 3.49992 3.51719 3.96730 4.38677 4.56459 4.60641 4.67103 4.87629 4.99823 5.06247 5.13388 5.17913 5.20721 5.31666 5.36449 5.45145 5.50229 5.56385 5.56835 5.58683 5.64995 5.71024 5.77631 5.84270 5.92447 5.95560 6.02220 6.09052 6.17979 6.20920 6.33519 6.33959 6.52183 6.55537 6.62002 6.69749 6.78708 6.91452 7.00024 7.19697 7.32667 7.38955 7.48226 7.72661 7.86827 8.32532 8.45667 9.03187 9.29365 9.91812 10.40280 11.38798 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003258 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.843931 B = 8592.383030 C = 9454.436234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.624 5.624 4 C 0.118 3.882 5 C -0.174 4.174 6 C 0.235 3.765 7 C -0.210 4.210 8 C -0.013 4.013 9 C -0.181 4.181 10 C 0.566 3.434 11 O -0.559 6.559 12 N -0.696 5.696 13 C 0.118 3.882 14 H 0.085 0.915 15 C -0.159 4.159 16 C 0.142 3.858 17 N -0.597 5.597 18 C 0.161 3.839 19 C -0.255 4.255 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.029 4.029 28 C -0.206 4.206 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.392 0.608 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.040 0.960 47 H 0.033 0.967 48 H 0.042 0.958 49 H -0.007 1.007 50 H 0.250 0.750 51 H 0.123 0.877 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.007 -2.727 -14.241 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 N -0.335 5.335 4 C -0.005 4.005 5 C -0.233 4.233 6 C 0.133 3.867 7 C -0.233 4.233 8 C -0.033 4.033 9 C -0.186 4.186 10 C 0.354 3.646 11 O -0.439 6.439 12 N -0.345 5.345 13 C 0.010 3.990 14 H 0.103 0.897 15 C -0.218 4.218 16 C 0.014 3.986 17 N -0.319 5.319 18 C 0.016 3.984 19 C -0.385 4.385 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.049 4.049 28 C -0.228 4.228 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.227 0.773 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.061 0.939 49 H 0.011 0.989 50 H 0.060 0.940 51 H 0.141 0.859 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.619 -2.124 -14.478 19.990 hybrid contribution 1.034 -0.451 0.066 1.130 sum -12.585 -2.575 -14.411 19.305 Atomic orbital electron populations 1.22227 0.96395 1.01906 1.02522 1.21409 0.93936 0.82519 1.02814 1.46518 1.70844 1.13136 1.02954 1.21389 0.96276 0.97859 0.84973 1.22241 0.97410 1.02108 1.01515 1.17925 0.91888 0.91277 0.85653 1.20556 1.10220 0.94134 0.98349 1.20959 0.92558 0.99371 0.90427 1.19782 1.09437 0.95519 0.93813 1.18035 0.76948 0.85888 0.83754 1.90691 1.47199 1.18249 1.87795 1.45675 1.66744 1.16699 1.05371 1.21830 0.96865 0.95682 0.84623 0.89684 1.22156 0.98427 1.00028 1.01157 1.21202 0.91027 0.91595 0.94769 1.43874 1.01901 1.20697 1.65424 1.20859 0.93666 0.87758 0.96083 1.19201 0.82260 1.28274 1.08775 0.91446 1.25019 0.98005 1.00888 0.95367 1.70049 1.30054 1.42520 1.12051 0.86224 0.85306 0.77225 0.78023 1.20370 1.21773 1.21784 1.21034 0.93295 0.92963 0.97580 1.20530 1.10778 1.00716 0.90796 0.92725 0.91843 0.92050 0.91020 0.90314 0.91076 0.90519 0.92592 0.91892 0.91884 0.85894 0.85143 0.77266 0.93301 0.92953 0.92213 0.92358 0.94133 0.94860 0.93937 0.98856 0.93975 0.85908 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.24 37.16 0.38 -0.85 16 2 C 0.12 0.94 5.86 -4.04 -0.02 0.92 16 3 N -0.62 -6.23 2.59 -171.75 -0.44 -6.68 16 4 C 0.12 0.95 5.86 -4.04 -0.02 0.92 16 5 C -0.17 -1.40 10.24 37.15 0.38 -1.02 16 6 C 0.24 3.02 6.55 -83.86 -0.55 2.47 16 7 C -0.21 -2.87 9.18 -39.45 -0.36 -3.23 16 8 C -0.01 -0.22 9.58 -39.23 -0.38 -0.60 16 9 C -0.18 -3.24 5.88 -104.95 -0.62 -3.86 16 10 C 0.57 11.87 7.73 -12.47 -0.10 11.78 16 11 O -0.56 -13.47 16.00 5.28 0.08 -13.38 16 12 N -0.70 -13.60 4.36 -54.85 -0.24 -13.84 16 13 C 0.12 2.32 2.88 -67.93 -0.20 2.13 16 14 H 0.09 2.03 7.58 -51.93 -0.39 1.63 16 15 C -0.16 -2.54 9.48 37.16 0.35 -2.18 16 16 C 0.14 2.85 5.33 -4.04 -0.02 2.82 16 17 N -0.60 -14.64 2.78 -181.11 -0.50 -15.14 16 18 C 0.16 3.79 7.60 59.85 0.46 4.25 16 19 C -0.26 -7.06 9.66 -15.06 -0.15 -7.21 16 20 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 21 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 22 N -0.90 -26.46 10.66 55.49 0.59 -25.87 16 23 Si 0.90 22.47 29.57 -169.99 -5.03 17.44 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 C -0.03 -0.45 9.53 -39.23 -0.37 -0.83 16 28 C -0.21 -2.76 9.18 -39.45 -0.36 -3.13 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.08 0.67 6.17 -51.93 -0.32 0.35 16 34 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 35 H 0.08 0.61 6.17 -51.93 -0.32 0.29 16 36 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.12 1.40 6.11 -52.49 -0.32 1.08 16 40 H 0.13 2.16 7.64 -52.48 -0.40 1.76 16 41 H 0.39 7.03 5.19 -40.82 -0.21 6.82 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 46 H 0.04 0.71 7.86 -51.93 -0.41 0.31 16 47 H 0.03 0.84 6.90 -51.93 -0.36 0.48 16 48 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 49 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 51 H 0.12 1.77 6.39 -52.49 -0.34 1.44 16 52 H 0.12 1.40 6.11 -52.49 -0.32 1.07 16 LS Contribution 412.08 15.07 6.21 6.21 Total: -1.00 -33.30 412.08 -9.78 -43.08 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.78 Total: 5.70 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.67 Total: 2.46 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.60 Total: -61.52 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.30 -9.78 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569149240.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.281 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds