Wall clock time and date at job start Tue Mar 31 2020 18:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46996 * 2 1 4 4 C 1.46505 * 120.00021 * 269.99413 * 3 2 1 5 5 C 1.52993 * 109.47544 * 270.00189 * 4 3 2 6 6 C 1.39043 * 119.99968 * 90.00335 * 3 2 1 7 7 C 1.39221 * 119.93222 * 179.97438 * 6 3 2 8 8 C 1.37607 * 120.06878 * 179.97438 * 7 6 3 9 9 C 1.39799 * 119.93247 * 0.02562 * 8 7 6 10 10 C 1.47521 * 120.06765 * 180.02562 * 9 8 7 11 11 O 1.21598 * 120.00158 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99735 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99720 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47357 * 325.00091 * 13 12 10 15 15 C 1.53000 * 109.47086 * 85.00007 * 13 12 10 16 16 C 1.52999 * 109.47016 * 205.00004 * 13 12 10 17 17 N 1.46500 * 109.47454 * 55.00143 * 16 13 12 18 18 C 1.46504 * 119.99793 * 270.00080 * 17 16 13 19 19 C 1.36934 * 120.00137 * 89.99686 * 17 16 13 20 20 H 1.08002 * 119.99636 * 23.67334 * 19 17 16 21 21 C 1.38816 * 120.00236 * 203.67294 * 19 17 16 22 22 N 1.31623 * 119.99603 * 11.23723 * 21 19 17 23 23 Si 1.86792 * 119.99973 * 191.23387 * 21 19 17 24 24 H 1.48504 * 109.47424 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47011 * 120.00451 * 23 21 19 26 26 H 1.48501 * 109.46865 * 239.99942 * 23 21 19 27 27 C 1.39795 * 119.85989 * 0.27851 * 9 8 7 28 28 C 1.37607 * 119.93105 * 359.42179 * 27 9 8 29 29 H 1.09004 * 109.46832 * 59.99678 * 1 2 3 30 30 H 1.08995 * 109.46787 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46824 * 300.00109 * 1 2 3 32 32 H 1.09005 * 109.47362 * 240.00135 * 2 1 3 33 33 H 1.09004 * 109.47253 * 119.99989 * 2 1 3 34 34 H 1.08997 * 109.46857 * 30.00536 * 4 3 2 35 35 H 1.09005 * 109.46550 * 150.00004 * 4 3 2 36 36 H 1.09010 * 109.46920 * 60.00420 * 5 4 3 37 37 H 1.08995 * 109.47507 * 179.97438 * 5 4 3 38 38 H 1.09003 * 109.47372 * 300.00508 * 5 4 3 39 39 H 1.07998 * 119.96356 * 0.02735 * 7 6 3 40 40 H 1.08006 * 120.03395 * 180.02562 * 8 7 6 41 41 H 0.97001 * 119.99804 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.46902 * 59.99766 * 15 13 12 43 43 H 1.09001 * 109.47334 * 299.99734 * 15 13 12 44 44 H 1.09003 * 109.47348 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.47658 * 175.00167 * 16 13 12 46 46 H 1.09004 * 109.47017 * 294.99795 * 16 13 12 47 47 H 1.09003 * 109.46880 * 94.61757 * 18 17 16 48 48 H 1.08998 * 109.47141 * 214.61575 * 18 17 16 49 49 H 1.08999 * 109.47668 * 334.62391 * 18 17 16 50 50 H 0.96993 * 119.99796 * 180.02562 * 22 21 19 51 51 H 1.08002 * 120.03170 * 179.72084 * 27 9 8 52 52 H 1.07994 * 119.96589 * 180.29795 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8315 -1.7104 6 6 2.2501 2.0367 1.2041 7 6 2.7147 3.3491 1.2025 8 6 2.9445 4.0006 2.3926 9 6 2.7116 3.3431 3.6041 10 6 2.9564 4.0389 4.8817 11 8 3.3608 5.1857 4.8817 12 7 2.7319 3.4035 6.0489 13 6 2.9745 4.0947 7.3176 14 1 3.8330 4.7578 7.2117 15 6 1.7398 4.9153 7.6955 16 6 3.2574 3.0650 8.4133 17 7 4.3653 2.2013 7.9975 18 6 4.0939 0.9700 7.2515 19 6 5.6544 2.5448 8.3061 20 1 5.8536 3.1978 9.1430 21 6 6.7052 2.0538 7.5434 22 7 6.4616 1.4453 6.4020 23 14 8.4647 2.2569 8.1368 24 1 8.4686 2.9699 9.4395 25 1 9.0884 0.9195 8.3031 26 1 9.2357 3.0422 7.1398 27 6 2.2512 2.0231 3.6024 28 6 2.0173 1.3791 2.4090 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1411 -1.1384 36 1 3.8745 0.7621 -1.8408 37 1 3.8892 2.3449 -2.6545 38 1 4.3884 2.2155 -0.9507 39 1 2.8940 3.8566 0.2662 40 1 3.3045 5.0189 2.3907 41 1 2.4096 2.4886 6.0488 42 1 0.8812 4.2522 7.8014 43 1 1.5382 5.6489 6.9149 44 1 1.9201 5.4293 8.6397 45 1 3.5250 3.5802 9.3358 46 1 2.3672 2.4588 8.5808 47 1 4.1807 1.1661 6.1828 48 1 4.8139 0.2042 7.5400 49 1 3.0852 0.6235 7.4764 50 1 7.1958 1.1019 5.8692 51 1 2.0746 1.5110 4.5367 52 1 1.6571 0.3610 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569149240.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:23 Heat of formation + Delta-G solvation = -1.655316 kcal Electronic energy + Delta-G solvation = -29651.745681 eV Core-core repulsion = 25844.197835 eV Total energy + Delta-G solvation = -3807.547846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.21892 -40.14955 -38.10425 -37.37956 -35.72212 -33.50522 -33.20476 -32.40753 -31.62818 -31.10314 -28.83080 -27.95592 -27.38724 -25.00409 -24.96800 -23.52247 -22.88941 -22.25800 -21.53801 -20.75244 -19.10725 -18.73407 -17.82948 -17.30876 -16.82146 -16.68162 -16.10666 -15.84887 -15.53079 -15.47469 -15.20869 -15.03799 -14.90474 -14.60190 -14.40456 -14.24276 -14.01486 -13.80009 -13.58124 -13.46834 -13.20418 -13.15882 -13.05380 -12.83622 -12.73682 -12.67318 -12.65073 -12.50743 -12.28191 -12.11139 -12.01396 -11.85030 -11.80515 -11.68483 -11.51932 -10.81257 -10.79163 -10.62211 -9.93987 -9.86674 -8.69336 -8.23254 -7.79823 -5.26364 0.16090 0.52125 1.42419 1.44952 1.53773 2.07071 2.13932 2.47097 2.53870 3.07078 3.34158 3.73768 3.79622 3.90505 4.01080 4.08034 4.19937 4.24348 4.26991 4.40436 4.43522 4.49249 4.52000 4.54569 4.56457 4.56799 4.70023 4.78373 4.85128 4.87063 4.91408 4.93840 5.00197 5.01281 5.01778 5.13022 5.20879 5.26747 5.31833 5.37069 5.39153 5.40858 5.43779 5.57847 5.67190 5.75543 5.81296 5.84096 6.36204 6.36665 6.50647 6.78263 7.20157 7.46541 7.92148 8.33042 9.22368 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003258 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.843931 B = 8592.383030 C = 9454.436234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.618 5.618 4 C 0.112 3.888 5 C -0.170 4.170 6 C 0.245 3.755 7 C -0.210 4.210 8 C -0.027 4.027 9 C -0.218 4.218 10 C 0.556 3.444 11 O -0.606 6.606 12 N -0.691 5.691 13 C 0.121 3.879 14 H 0.034 0.966 15 C -0.145 4.145 16 C 0.142 3.858 17 N -0.611 5.611 18 C 0.174 3.826 19 C -0.260 4.260 20 H 0.067 0.933 21 C -0.049 4.049 22 N -0.928 5.928 23 Si 0.958 3.042 24 H -0.267 1.267 25 H -0.288 1.288 26 H -0.301 1.301 27 C -0.030 4.030 28 C -0.207 4.207 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.145 0.855 40 H 0.116 0.884 41 H 0.401 0.599 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.012 0.988 48 H 0.011 0.989 49 H 0.036 0.964 50 H 0.243 0.757 51 H 0.130 0.870 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.932 -4.369 -15.262 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.326 5.326 4 C -0.010 4.010 5 C -0.229 4.229 6 C 0.139 3.861 7 C -0.233 4.233 8 C -0.047 4.047 9 C -0.223 4.223 10 C 0.346 3.654 11 O -0.490 6.490 12 N -0.340 5.340 13 C 0.014 3.986 14 H 0.052 0.948 15 C -0.204 4.204 16 C 0.015 3.985 17 N -0.333 5.333 18 C 0.029 3.971 19 C -0.391 4.391 20 H 0.084 0.916 21 C -0.244 4.244 22 N -0.574 5.574 23 Si 0.788 3.212 24 H -0.191 1.191 25 H -0.215 1.215 26 H -0.229 1.229 27 C -0.050 4.050 28 C -0.230 4.230 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.134 0.866 41 H 0.237 0.763 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.030 0.970 48 H 0.030 0.970 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.147 0.853 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.588 -3.799 -15.497 22.306 hybrid contribution 1.557 0.001 0.262 1.579 sum -14.030 -3.798 -15.235 21.056 Atomic orbital electron populations 1.22163 0.95352 1.02863 1.02016 1.21641 0.94705 0.81283 1.03706 1.46835 1.69265 1.13865 1.02598 1.21615 0.96864 0.98049 0.84519 1.22199 0.96728 1.02304 1.01618 1.18050 0.90220 0.90953 0.86838 1.20703 1.09832 0.94658 0.98069 1.20968 0.93371 0.99099 0.91249 1.19677 1.13005 0.96903 0.92687 1.18619 0.76135 0.85575 0.85091 1.90641 1.49573 1.20249 1.88520 1.45649 1.66258 1.16994 1.05085 1.21685 0.96931 0.95270 0.84743 0.94770 1.22018 0.97297 0.99654 1.01395 1.21384 0.90895 0.91564 0.94627 1.44088 1.02077 1.21828 1.65353 1.20640 0.95019 0.86740 0.94683 1.19501 0.83976 1.27241 1.08351 0.91570 1.25692 1.01326 1.01605 0.95804 1.70210 1.30328 1.43875 1.13016 0.85329 0.81270 0.76996 0.77631 1.19135 1.21485 1.22921 1.21114 0.93016 0.91989 0.98853 1.20771 1.10307 1.01666 0.90209 0.92263 0.90209 0.93488 0.88971 0.90661 0.88434 0.90395 0.92415 0.90085 0.94330 0.83778 0.86608 0.76271 0.90524 0.94459 0.90318 0.91670 0.90500 0.96979 0.96986 0.94546 0.94790 0.85251 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.11 1.41 5.86 86.38 0.51 1.91 16 3 N -0.62 -10.72 2.59 -697.29 -1.81 -12.52 16 4 C 0.11 1.46 5.86 86.38 0.51 1.97 16 5 C -0.17 -2.35 10.24 71.98 0.74 -1.61 16 6 C 0.25 5.96 6.55 38.47 0.25 6.21 16 7 C -0.21 -5.69 9.18 22.36 0.21 -5.48 16 8 C -0.03 -0.93 9.58 22.50 0.22 -0.71 16 9 C -0.22 -8.16 5.88 -20.08 -0.12 -8.28 16 10 C 0.56 24.59 7.73 86.69 0.67 25.26 16 11 O -0.61 -31.28 16.00 -4.02 -0.06 -31.35 16 12 N -0.69 -27.56 4.36 -445.71 -1.94 -29.51 16 13 C 0.12 4.83 2.88 44.99 0.13 4.96 16 14 H 0.03 1.71 7.58 -2.39 -0.02 1.69 16 15 C -0.14 -4.48 9.48 71.98 0.68 -3.79 16 16 C 0.14 5.50 5.33 86.38 0.46 5.96 16 17 N -0.61 -29.87 2.78 -726.92 -2.02 -31.89 16 18 C 0.17 8.14 7.60 127.77 0.97 9.11 16 19 C -0.26 -14.53 9.66 84.03 0.81 -13.71 16 20 H 0.07 3.64 7.85 -2.91 -0.02 3.62 16 21 C -0.05 -2.81 5.13 84.86 0.44 -2.37 16 22 N -0.93 -55.93 10.66 21.65 0.23 -55.70 16 23 Si 0.96 47.10 29.57 68.60 2.03 49.13 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 27 C -0.03 -0.94 9.53 22.50 0.21 -0.72 16 28 C -0.21 -5.31 9.18 22.36 0.21 -5.10 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.87 8.07 -2.38 -0.02 0.85 16 33 H 0.08 1.06 6.17 -2.39 -0.01 1.04 16 34 H 0.10 0.84 8.07 -2.39 -0.02 0.82 16 35 H 0.08 1.04 6.17 -2.38 -0.01 1.02 16 36 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.14 3.16 6.11 -2.91 -0.02 3.14 16 40 H 0.12 4.19 7.64 -2.91 -0.02 4.17 16 41 H 0.40 14.30 5.19 -92.71 -0.48 13.82 16 42 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.07 2.44 8.03 -2.39 -0.02 2.42 16 46 H 0.08 2.45 7.86 -2.38 -0.02 2.43 16 47 H 0.01 0.61 6.90 -2.39 -0.02 0.60 16 48 H 0.01 0.60 7.30 -2.39 -0.02 0.58 16 49 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 50 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 51 H 0.13 3.70 6.39 -2.91 -0.02 3.68 16 52 H 0.15 3.00 6.11 -2.91 -0.02 2.98 16 Total: -1.00 -76.00 412.08 4.47 -71.53 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.42 Total: 27.81 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 7.62 Total: 12.50 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -5.54 Total: -129.63 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.06 Total: -31.35 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.00 4.47 -71.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569149240.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.879 kcal (2) G-P(sol) polarization free energy of solvation -76.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds