Wall clock time and date at job start Tue Mar 31 2020 17:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47330 * 2 1 4 4 C 1.36449 * 124.85389 * 90.02190 * 3 2 1 5 5 C 1.50699 * 125.56739 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85529 * 179.97438 * 4 3 2 7 7 C 1.46686 * 106.33509 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.94138 * 179.97438 * 7 6 4 9 9 O 1.21629 * 119.99936 * 203.93548 * 8 7 6 10 10 N 1.34771 * 120.00052 * 23.93731 * 8 7 6 11 11 C 1.47491 * 127.03526 * 5.62266 * 10 8 7 12 12 C 1.53999 * 107.08208 * 154.52164 * 11 10 8 13 13 C 1.54621 * 105.04841 * 1.30148 * 12 11 10 14 14 C 1.52993 * 110.74433 * 263.51808 * 13 12 11 15 15 C 1.53000 * 110.73711 * 140.36730 * 13 12 11 16 16 N 1.46501 * 109.46979 * 180.02562 * 15 13 12 17 17 C 1.36936 * 119.99680 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00787 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99505 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00277 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99848 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47188 * 89.99900 * 21 19 17 23 23 H 1.48497 * 109.47253 * 210.00177 * 21 19 17 24 24 H 1.48504 * 109.47122 * 330.00373 * 21 19 17 25 25 C 1.48124 * 127.03271 * 185.31225 * 10 8 7 26 26 C 1.34662 * 124.84819 * 269.71919 * 3 2 1 27 27 C 1.50695 * 125.80005 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.46904 * 60.00595 * 1 2 3 29 29 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47204 * 300.00281 * 1 2 3 31 31 H 1.09006 * 109.46525 * 120.00184 * 2 1 3 32 32 H 1.08997 * 109.47453 * 239.99228 * 2 1 3 33 33 H 1.08994 * 109.47477 * 90.00219 * 5 4 3 34 34 H 1.09000 * 109.46918 * 210.00040 * 5 4 3 35 35 H 1.08997 * 109.47397 * 329.99502 * 5 4 3 36 36 H 1.08004 * 126.83035 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.91097 * 273.88045 * 11 10 8 38 38 H 1.08996 * 109.91010 * 35.16129 * 11 10 8 39 39 H 1.08995 * 110.33288 * 120.20065 * 12 11 10 40 40 H 1.09004 * 110.32675 * 242.31244 * 12 11 10 41 41 H 1.08999 * 109.47241 * 59.99643 * 14 13 12 42 42 H 1.09003 * 109.47195 * 179.97438 * 14 13 12 43 43 H 1.09006 * 109.46843 * 299.99692 * 14 13 12 44 44 H 1.09007 * 109.47209 * 300.00479 * 15 13 12 45 45 H 1.09001 * 109.47141 * 60.00397 * 15 13 12 46 46 H 0.96993 * 120.00101 * 359.97438 * 16 15 13 47 47 H 0.96995 * 120.00047 * 179.97438 * 20 19 17 48 48 H 1.08998 * 110.65731 * 337.76675 * 25 10 8 49 49 H 1.09002 * 110.66095 * 100.88414 * 25 10 8 50 50 H 1.09002 * 109.47233 * 89.99935 * 27 26 3 51 51 H 1.09006 * 109.47158 * 209.99976 * 27 26 3 52 52 H 1.09001 * 109.47115 * 329.99705 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1162 1.1197 5 6 2.1104 1.6401 2.5396 6 6 2.7101 3.3349 0.7491 7 6 2.7122 3.3433 -0.7178 8 6 3.1059 4.4580 -1.5959 9 8 2.6738 4.5197 -2.7312 10 7 3.9451 5.4097 -1.1416 11 6 4.6478 5.4292 0.1550 12 6 5.9110 6.2907 -0.0280 13 6 5.8551 6.7789 -1.4941 14 6 6.6999 5.8785 -2.3977 15 6 6.3164 8.2339 -1.5986 16 7 6.2520 8.6675 -2.9965 17 6 6.6201 9.9421 -3.3356 18 1 6.9575 10.6279 -2.5727 19 6 6.5595 10.3527 -4.6603 20 7 6.1487 9.5168 -5.5903 21 14 7.0609 12.0916 -5.1229 22 1 8.5115 12.1209 -5.4396 23 1 6.2859 12.5307 -6.3111 24 1 6.7840 13.0058 -3.9858 25 6 4.3552 6.6471 -1.8450 26 6 2.2800 2.1048 -1.1051 27 6 2.1196 1.6319 -2.5269 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.0385 1.1824 2.8818 34 1 1.8653 2.4872 3.1802 35 1 1.3055 0.9064 2.5838 36 1 2.9970 4.1462 1.4016 37 1 4.0060 5.8688 0.9185 38 1 4.9280 4.4153 0.4406 39 1 5.8924 7.1400 0.6548 40 1 6.8058 5.6910 0.1390 41 1 6.3194 4.8581 -2.3518 42 1 6.6454 6.2405 -3.4244 43 1 7.7363 5.8954 -2.0605 44 1 5.6669 8.8655 -0.9923 45 1 7.3421 8.3166 -1.2391 46 1 5.9493 8.0515 -3.6818 47 1 6.1060 9.8038 -6.5158 48 1 4.2208 6.5401 -2.9214 49 1 3.7977 7.5054 -1.4701 50 1 1.1122 1.8608 -2.8745 51 1 2.8468 2.1375 -3.1623 52 1 2.2838 0.5553 -2.5724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569676514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:11 Heat of formation + Delta-G solvation = 17.242575 kcal Electronic energy + Delta-G solvation = -29487.648051 eV Core-core repulsion = 25680.919679 eV Total energy + Delta-G solvation = -3806.728372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66968 -39.66622 -37.57657 -34.73041 -34.33493 -32.86901 -32.49843 -30.36898 -29.72524 -29.30951 -28.99024 -26.59805 -25.71260 -24.67187 -23.83382 -23.29947 -21.95023 -21.22271 -19.74953 -18.69765 -18.00410 -17.19015 -16.74211 -15.97670 -15.71755 -15.51629 -15.27966 -14.57510 -14.45872 -14.21383 -13.75933 -13.67243 -13.56249 -13.48301 -13.30497 -13.23111 -13.09740 -12.81437 -12.74927 -12.55508 -12.34823 -12.25506 -12.00468 -11.90341 -11.86631 -11.68453 -11.51061 -11.39332 -11.31708 -10.92216 -10.76412 -10.37249 -10.31885 -10.20118 -9.86384 -9.58383 -9.50969 -8.80105 -8.69173 -8.34629 -8.02335 -6.83195 -5.67916 -2.96469 1.79976 2.28038 2.55097 3.37409 3.49179 3.53894 3.56059 3.65795 4.22415 4.42374 4.52943 4.62943 4.66925 4.71178 4.80253 4.89778 4.91271 5.10246 5.12447 5.13280 5.15484 5.22451 5.31037 5.45405 5.49152 5.50438 5.53663 5.61721 5.62906 5.66984 5.75602 5.80802 5.87460 5.90890 6.01398 6.09741 6.17295 6.22802 6.28885 6.32495 6.45910 6.52817 6.68279 6.74215 6.79242 6.87870 6.97641 7.00976 7.11851 7.77339 7.94406 8.50735 8.58771 9.61833 10.20415 10.54950 11.54865 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.002425 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.523363 B =11545.999105 C =12256.278559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.438 5.438 4 C 0.006 3.994 5 C -0.082 4.082 6 C -0.164 4.164 7 C -0.222 4.222 8 C 0.606 3.394 9 O -0.548 6.548 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.126 4.126 13 C -0.078 4.078 14 C -0.128 4.128 15 C 0.169 3.831 16 N -0.731 5.731 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.122 3.878 26 C 0.099 3.901 27 C -0.087 4.087 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.145 0.855 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.021 0.979 45 H 0.022 0.978 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.091 0.909 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 -22.973 18.177 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.116 5.116 4 C -0.101 4.101 5 C -0.139 4.139 6 C -0.188 4.188 7 C -0.232 4.232 8 C 0.397 3.603 9 O -0.427 6.427 10 N -0.347 5.347 11 C -0.016 4.016 12 C -0.164 4.164 13 C -0.080 4.080 14 C -0.185 4.185 15 C 0.041 3.959 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.000 4.000 26 C -0.017 4.017 27 C -0.144 4.144 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.040 0.960 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.090 0.910 50 H 0.097 0.903 51 H 0.110 0.890 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.321 -23.177 17.578 30.546 hybrid contribution 0.201 0.839 -0.374 0.940 sum -9.120 -22.338 17.205 29.634 Atomic orbital electron populations 1.22162 0.94216 1.02961 1.03435 1.21845 0.95687 0.80804 1.04362 1.43582 1.51141 1.11822 1.05050 1.20162 1.08711 0.92721 0.88545 1.20301 1.01942 1.01896 0.89798 1.21913 1.07098 0.96652 0.93132 1.20071 1.15121 0.94748 0.93251 1.16956 0.77555 0.80249 0.85559 1.90780 1.56009 1.76678 1.19218 1.48556 1.45176 1.22047 1.18954 1.22138 0.93185 1.00437 0.85868 1.22606 0.97174 0.99510 0.97122 1.21774 0.94737 0.97329 0.94136 1.21688 0.98450 0.97794 1.00600 1.20627 0.97300 0.89463 0.88505 1.42421 1.79899 1.12960 1.02295 1.19211 1.36245 0.89235 0.92268 0.91251 1.24738 1.02378 0.97993 0.95921 1.69661 1.53298 1.34582 1.00500 0.86206 0.77872 0.84495 0.77701 1.21837 1.21847 1.20835 1.22454 0.93509 0.85060 0.99008 1.20186 1.01233 0.91209 0.89045 1.20449 1.04248 1.00238 0.89484 0.91622 0.90709 0.91822 0.89202 0.89104 0.91191 0.90156 0.91984 0.83695 0.92059 0.90825 0.90451 0.90772 0.93703 0.91225 0.92909 0.96163 0.95991 0.77985 0.93532 0.89362 0.90998 0.90344 0.88986 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.09 0.55 6.09 -4.04 -0.02 0.52 16 3 N -0.44 -4.18 2.69 -107.96 -0.29 -4.47 16 4 C 0.01 0.06 6.85 -81.86 -0.56 -0.50 16 5 C -0.08 -0.48 9.81 36.01 0.35 -0.13 16 6 C -0.16 -1.90 9.15 -37.50 -0.34 -2.24 16 7 C -0.22 -3.19 5.93 -103.35 -0.61 -3.80 16 8 C 0.61 10.58 7.74 -12.59 -0.10 10.48 16 9 O -0.55 -11.41 15.70 5.25 0.08 -11.33 16 10 N -0.61 -9.88 3.19 -171.30 -0.55 -10.43 16 11 C 0.11 1.33 5.31 -2.98 -0.02 1.31 16 12 C -0.13 -1.61 6.09 -25.36 -0.15 -1.77 16 13 C -0.08 -1.32 0.64 -152.82 -0.10 -1.42 16 14 C -0.13 -2.23 8.30 37.15 0.31 -1.92 16 15 C 0.17 3.42 5.11 -4.04 -0.02 3.40 16 16 N -0.73 -18.73 5.16 -59.91 -0.31 -19.04 16 17 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 21 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.12 2.20 5.68 -2.31 -0.01 2.19 16 26 C 0.10 1.22 6.88 -81.88 -0.56 0.66 16 27 C -0.09 -0.95 9.38 36.00 0.34 -0.61 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.37 7.52 -51.93 -0.39 -0.02 16 32 H 0.09 0.44 6.87 -51.93 -0.36 0.09 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.29 7.60 -51.93 -0.39 -0.10 16 36 H 0.15 1.47 6.29 -52.48 -0.33 1.14 16 37 H 0.06 0.67 7.47 -51.93 -0.39 0.28 16 38 H 0.07 0.84 6.89 -51.93 -0.36 0.48 16 39 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 40 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 41 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 42 H 0.07 1.42 6.69 -51.93 -0.35 1.07 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.02 0.41 8.11 -51.92 -0.42 -0.01 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.39 10.49 6.21 -40.82 -0.25 10.23 16 47 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.09 1.87 7.71 -51.93 -0.40 1.47 16 49 H 0.07 1.32 8.02 -51.93 -0.42 0.91 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.21 7.17 -51.93 -0.37 0.84 16 52 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 LS Contribution 407.87 15.07 6.15 6.15 Total: -1.00 -35.02 407.87 -9.54 -44.56 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.95 Total: 6.65 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.37 Total: -1.75 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.42 Total: -62.15 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.02 -9.54 -44.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569676514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.801 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds