Wall clock time and date at job start Tue Mar 31 2020 17:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47330 * 2 1 4 4 C 1.36449 * 124.85389 * 90.02190 * 3 2 1 5 5 C 1.50699 * 125.56739 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85529 * 179.97438 * 4 3 2 7 7 C 1.46686 * 106.33509 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.94138 * 179.97438 * 7 6 4 9 9 O 1.21629 * 119.99936 * 203.93548 * 8 7 6 10 10 N 1.34771 * 120.00052 * 23.93731 * 8 7 6 11 11 C 1.47491 * 127.03526 * 5.62266 * 10 8 7 12 12 C 1.53999 * 107.08208 * 154.52164 * 11 10 8 13 13 C 1.54621 * 105.04841 * 1.30148 * 12 11 10 14 14 C 1.52993 * 110.74433 * 263.51808 * 13 12 11 15 15 C 1.53000 * 110.73711 * 140.36730 * 13 12 11 16 16 N 1.46501 * 109.46979 * 180.02562 * 15 13 12 17 17 C 1.36936 * 119.99680 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00787 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99505 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00277 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99848 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47188 * 89.99900 * 21 19 17 23 23 H 1.48497 * 109.47253 * 210.00177 * 21 19 17 24 24 H 1.48504 * 109.47122 * 330.00373 * 21 19 17 25 25 C 1.48124 * 127.03271 * 185.31225 * 10 8 7 26 26 C 1.34662 * 124.84819 * 269.71919 * 3 2 1 27 27 C 1.50695 * 125.80005 * 0.02562 * 26 3 2 28 28 H 1.08999 * 109.46904 * 60.00595 * 1 2 3 29 29 H 1.08991 * 109.47366 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47204 * 300.00281 * 1 2 3 31 31 H 1.09006 * 109.46525 * 120.00184 * 2 1 3 32 32 H 1.08997 * 109.47453 * 239.99228 * 2 1 3 33 33 H 1.08994 * 109.47477 * 90.00219 * 5 4 3 34 34 H 1.09000 * 109.46918 * 210.00040 * 5 4 3 35 35 H 1.08997 * 109.47397 * 329.99502 * 5 4 3 36 36 H 1.08004 * 126.83035 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.91097 * 273.88045 * 11 10 8 38 38 H 1.08996 * 109.91010 * 35.16129 * 11 10 8 39 39 H 1.08995 * 110.33288 * 120.20065 * 12 11 10 40 40 H 1.09004 * 110.32675 * 242.31244 * 12 11 10 41 41 H 1.08999 * 109.47241 * 59.99643 * 14 13 12 42 42 H 1.09003 * 109.47195 * 179.97438 * 14 13 12 43 43 H 1.09006 * 109.46843 * 299.99692 * 14 13 12 44 44 H 1.09007 * 109.47209 * 300.00479 * 15 13 12 45 45 H 1.09001 * 109.47141 * 60.00397 * 15 13 12 46 46 H 0.96993 * 120.00101 * 359.97438 * 16 15 13 47 47 H 0.96995 * 120.00047 * 179.97438 * 20 19 17 48 48 H 1.08998 * 110.65731 * 337.76675 * 25 10 8 49 49 H 1.09002 * 110.66095 * 100.88414 * 25 10 8 50 50 H 1.09002 * 109.47233 * 89.99935 * 27 26 3 51 51 H 1.09006 * 109.47158 * 209.99976 * 27 26 3 52 52 H 1.09001 * 109.47115 * 329.99705 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1162 1.1197 5 6 2.1104 1.6401 2.5396 6 6 2.7101 3.3349 0.7491 7 6 2.7122 3.3433 -0.7178 8 6 3.1059 4.4580 -1.5959 9 8 2.6738 4.5197 -2.7312 10 7 3.9451 5.4097 -1.1416 11 6 4.6478 5.4292 0.1550 12 6 5.9110 6.2907 -0.0280 13 6 5.8551 6.7789 -1.4941 14 6 6.6999 5.8785 -2.3977 15 6 6.3164 8.2339 -1.5986 16 7 6.2520 8.6675 -2.9965 17 6 6.6201 9.9421 -3.3356 18 1 6.9575 10.6279 -2.5727 19 6 6.5595 10.3527 -4.6603 20 7 6.1487 9.5168 -5.5903 21 14 7.0609 12.0916 -5.1229 22 1 8.5115 12.1209 -5.4396 23 1 6.2859 12.5307 -6.3111 24 1 6.7840 13.0058 -3.9858 25 6 4.3552 6.6471 -1.8450 26 6 2.2800 2.1048 -1.1051 27 6 2.1196 1.6319 -2.5269 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.0385 1.1824 2.8818 34 1 1.8653 2.4872 3.1802 35 1 1.3055 0.9064 2.5838 36 1 2.9970 4.1462 1.4016 37 1 4.0060 5.8688 0.9185 38 1 4.9280 4.4153 0.4406 39 1 5.8924 7.1400 0.6548 40 1 6.8058 5.6910 0.1390 41 1 6.3194 4.8581 -2.3518 42 1 6.6454 6.2405 -3.4244 43 1 7.7363 5.8954 -2.0605 44 1 5.6669 8.8655 -0.9923 45 1 7.3421 8.3166 -1.2391 46 1 5.9493 8.0515 -3.6818 47 1 6.1060 9.8038 -6.5158 48 1 4.2208 6.5401 -2.9214 49 1 3.7977 7.5054 -1.4701 50 1 1.1122 1.8608 -2.8745 51 1 2.8468 2.1375 -3.1623 52 1 2.2838 0.5553 -2.5724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569676514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:10 Heat of formation + Delta-G solvation = -4.091853 kcal Electronic energy + Delta-G solvation = -29488.573181 eV Core-core repulsion = 25680.919679 eV Total energy + Delta-G solvation = -3807.653503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.49282 -40.95498 -38.97618 -36.45410 -35.05805 -34.20557 -33.61095 -32.17902 -30.55445 -30.25748 -30.01671 -27.95913 -27.34454 -25.84205 -24.90540 -24.33362 -23.43259 -22.14987 -20.69131 -20.15118 -19.31576 -18.73514 -17.91103 -17.06905 -16.86603 -16.55173 -16.47991 -16.08586 -15.55823 -15.46244 -15.20628 -15.13601 -14.65388 -14.53276 -14.30538 -14.12775 -13.98710 -13.84885 -13.72050 -13.58200 -13.41832 -13.35035 -13.12366 -12.99873 -12.93299 -12.77431 -12.75149 -12.50808 -12.46741 -12.27925 -12.14155 -12.11004 -12.04112 -11.65775 -11.46685 -11.38305 -10.94618 -10.87554 -9.70215 -9.47143 -8.96309 -8.89511 -7.91989 -5.20808 0.77678 1.46883 1.46951 1.49610 1.57949 1.79116 2.20251 2.46963 2.57732 3.40147 3.46390 3.69313 3.75953 3.80159 3.88855 3.90858 4.08681 4.11574 4.19485 4.25967 4.33318 4.36876 4.38926 4.43012 4.49617 4.61811 4.63886 4.71077 4.74221 4.78028 4.81693 4.84513 4.86268 4.91071 4.95588 4.99871 5.03825 5.08009 5.11513 5.14295 5.15783 5.25916 5.27886 5.35229 5.42189 5.50278 5.53105 5.85777 6.17342 6.29421 6.40949 6.69998 7.28130 7.35480 8.13158 8.35125 9.31977 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.002425 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.523363 B =11545.999105 C =12256.278559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 N -0.431 5.431 4 C 0.018 3.982 5 C -0.080 4.080 6 C -0.181 4.181 7 C -0.258 4.258 8 C 0.596 3.404 9 O -0.601 6.601 10 N -0.614 5.614 11 C 0.108 3.892 12 C -0.114 4.114 13 C -0.071 4.071 14 C -0.119 4.119 15 C 0.168 3.832 16 N -0.745 5.745 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.082 4.082 20 N -0.974 5.974 21 Si 0.975 3.025 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.267 1.267 25 C 0.125 3.875 26 C 0.090 3.910 27 C -0.083 4.083 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.158 0.842 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.029 0.971 43 H 0.069 0.931 44 H 0.028 0.972 45 H 0.033 0.967 46 H 0.372 0.628 47 H 0.249 0.751 48 H 0.042 0.958 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -24.652 22.313 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.034 4.034 3 N -0.108 5.108 4 C -0.090 4.090 5 C -0.137 4.137 6 C -0.204 4.204 7 C -0.268 4.268 8 C 0.389 3.611 9 O -0.484 6.484 10 N -0.346 5.346 11 C -0.014 4.014 12 C -0.152 4.152 13 C -0.072 4.072 14 C -0.176 4.176 15 C 0.041 3.959 16 N -0.388 5.388 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.274 4.274 20 N -0.625 5.625 21 Si 0.804 3.196 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.191 1.191 25 C 0.002 3.998 26 C -0.028 4.028 27 C -0.140 4.140 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.175 0.825 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.205 0.795 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.079 0.921 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.985 -24.870 21.816 34.281 hybrid contribution 0.052 1.261 -1.588 2.029 sum -8.933 -23.609 20.227 32.347 Atomic orbital electron populations 1.22139 0.93641 1.04223 1.02357 1.22219 0.96112 0.78812 1.06239 1.43867 1.49799 1.12961 1.04153 1.20767 1.06227 0.91960 0.90082 1.20437 1.03395 1.02793 0.87062 1.22064 1.08569 0.98192 0.91575 1.20011 1.17694 0.94536 0.94513 1.17612 0.77088 0.81002 0.85422 1.90734 1.58009 1.78003 1.21631 1.48615 1.45050 1.20876 1.20068 1.22374 0.92972 1.01679 0.84337 1.22614 0.98331 1.00529 0.93725 1.21646 0.93090 0.95331 0.97181 1.21580 0.99622 0.97900 0.98518 1.20815 0.97952 0.91498 0.85612 1.42675 1.79656 1.12135 1.04369 1.19679 1.34582 0.90331 0.92541 0.90194 1.25622 1.03481 1.02146 0.96104 1.69852 1.55481 1.36664 1.00496 0.85105 0.77268 0.79879 0.77303 1.21338 1.22618 1.19138 1.22202 0.94872 0.86140 0.96574 1.20293 1.01034 0.91270 0.90170 1.20375 1.03043 1.01871 0.88699 0.93475 0.88280 0.92114 0.86557 0.88078 0.89602 0.89210 0.90315 0.82478 0.89754 0.89099 0.88402 0.88569 0.93266 0.95229 0.91250 0.95442 0.94887 0.79502 0.94212 0.93969 0.91640 0.90694 0.92062 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 71.98 0.74 -0.50 16 2 C 0.09 0.71 6.09 86.38 0.53 1.24 16 3 N -0.43 -7.29 2.69 -495.49 -1.33 -8.62 16 4 C 0.02 0.30 6.85 40.98 0.28 0.58 16 5 C -0.08 -0.60 9.81 71.24 0.70 0.10 16 6 C -0.18 -3.86 9.15 23.62 0.22 -3.64 16 7 C -0.26 -7.47 5.93 -19.04 -0.11 -7.58 16 8 C 0.60 22.00 7.74 86.62 0.67 22.67 16 9 O -0.60 -27.41 15.70 -4.12 -0.06 -27.47 16 10 N -0.61 -20.29 3.19 -814.11 -2.60 -22.89 16 11 C 0.11 2.46 5.31 86.53 0.46 2.92 16 12 C -0.11 -2.61 6.09 31.48 0.19 -2.41 16 13 C -0.07 -2.40 0.64 -51.09 -0.03 -2.43 16 14 C -0.12 -4.24 8.30 71.98 0.60 -3.65 16 15 C 0.17 6.74 5.11 86.38 0.44 7.18 16 16 N -0.75 -39.36 5.16 -343.44 -1.77 -41.13 16 17 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 19 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 20 N -0.97 -62.97 13.06 21.65 0.28 -62.68 16 21 Si 0.98 47.88 29.55 68.60 2.03 49.90 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 C 0.13 4.80 5.68 86.61 0.49 5.29 16 26 C 0.09 2.20 6.88 41.78 0.29 2.49 16 27 C -0.08 -1.88 9.38 71.23 0.67 -1.21 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.12 0.41 7.52 -2.38 -0.02 0.39 16 32 H 0.10 0.66 6.87 -2.39 -0.02 0.64 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.36 7.60 -2.39 -0.02 0.35 16 36 H 0.16 2.78 6.29 -2.91 -0.02 2.76 16 37 H 0.08 1.57 7.47 -2.39 -0.02 1.56 16 38 H 0.09 1.81 6.89 -2.39 -0.02 1.79 16 39 H 0.10 1.91 7.85 -2.39 -0.02 1.89 16 40 H 0.10 1.85 7.87 -2.38 -0.02 1.83 16 41 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 42 H 0.03 1.27 6.69 -2.39 -0.02 1.26 16 43 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.03 1.08 8.11 -2.38 -0.02 1.07 16 45 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.37 21.52 6.21 -92.71 -0.58 20.94 16 47 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 48 H 0.04 1.98 7.71 -2.39 -0.02 1.96 16 49 H 0.07 2.54 8.02 -2.39 -0.02 2.52 16 50 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.06 1.77 7.17 -2.38 -0.02 1.76 16 52 H 0.09 1.40 6.92 -2.39 -0.02 1.38 16 Total: -1.00 -81.94 407.87 4.30 -77.64 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.33 Total: 31.56 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 7.43 Total: 3.69 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -5.42 Total: -135.32 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.06 Total: -27.47 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -81.94 4.30 -77.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569676514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.547 kcal (2) G-P(sol) polarization free energy of solvation -81.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds