Wall clock time and date at job start Tue Mar 31 2020 17:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47111 * 2 1 4 4 C 1.52992 * 109.47216 * 120.00278 * 2 1 3 5 5 C 1.50702 * 109.47464 * 294.99931 * 4 2 1 6 6 O 1.21291 * 119.99674 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00578 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00250 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47180 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.45853 * 60.02909 * 9 8 7 11 11 C 1.53041 * 109.46025 * 300.06860 * 9 8 7 12 12 C 1.53190 * 109.31300 * 178.61648 * 11 9 8 13 13 N 1.46926 * 108.77584 * 54.63313 * 12 11 9 14 14 C 1.36940 * 120.62932 * 126.41642 * 13 12 11 15 15 H 1.08001 * 119.99862 * 207.65516 * 14 13 12 16 16 C 1.38809 * 120.00090 * 27.65417 * 14 13 12 17 17 N 1.31624 * 119.99880 * 17.38432 * 16 14 13 18 18 Si 1.86799 * 119.99884 * 197.37753 * 16 14 13 19 19 H 1.48495 * 109.47073 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47071 * 120.00476 * 18 16 14 21 21 H 1.48503 * 109.47157 * 240.00025 * 18 16 14 22 22 C 1.46928 * 118.73941 * 306.39133 * 13 12 11 23 23 C 1.53049 * 109.45857 * 180.02562 * 9 8 7 24 24 N 1.46497 * 109.47288 * 240.00613 * 2 1 3 25 25 C 1.36347 * 125.63297 * 299.69388 * 24 2 1 26 26 C 1.34852 * 108.21660 * 179.83091 * 25 24 2 27 27 C 1.40881 * 107.41966 * 0.42351 * 26 25 24 28 28 C 1.34855 * 107.42005 * 359.73670 * 27 26 25 29 29 H 1.08998 * 109.47281 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46842 * 299.99928 * 1 2 3 31 31 H 1.09005 * 109.47317 * 59.99697 * 1 2 3 32 32 H 1.09007 * 109.47488 * 175.00220 * 4 2 1 33 33 H 1.08998 * 109.47564 * 55.00024 * 4 2 1 34 34 H 0.96999 * 120.00070 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.47095 * 59.99858 * 8 7 5 36 36 H 1.09002 * 109.47501 * 299.99736 * 8 7 5 37 37 H 1.08994 * 109.47624 * 59.99960 * 10 9 8 38 38 H 1.08998 * 109.46697 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47049 * 299.99606 * 10 9 8 40 40 H 1.09005 * 109.49395 * 298.56273 * 11 9 8 41 41 H 1.08995 * 109.49737 * 58.65656 * 11 9 8 42 42 H 1.09003 * 109.58162 * 294.84574 * 12 11 9 43 43 H 1.08994 * 109.58724 * 174.42032 * 12 11 9 44 44 H 0.97000 * 119.99838 * 179.97438 * 17 16 14 45 45 H 1.08998 * 109.58761 * 293.82119 * 22 13 12 46 46 H 1.09003 * 109.70300 * 173.46532 * 22 13 12 47 47 H 1.09000 * 109.49239 * 301.33716 * 23 9 8 48 48 H 1.08999 * 109.49488 * 61.43218 * 23 9 8 49 49 H 1.08000 * 125.88638 * 359.95227 * 25 24 2 50 50 H 1.08006 * 126.28811 * 180.16067 * 26 25 24 51 51 H 1.08000 * 126.29266 * 179.73762 * 27 26 25 52 52 H 1.07993 * 125.89471 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4766 6 8 1.0109 1.0869 2.3634 7 7 1.9854 -0.3915 3.7001 8 6 1.5974 0.3647 4.8933 9 6 2.1075 -0.3565 6.1425 10 6 3.6324 -0.4649 6.0814 11 6 1.4990 -1.7593 6.2055 12 6 2.0387 -2.4908 7.4386 13 7 1.7806 -1.6671 8.6276 14 6 1.1212 -2.1891 9.7083 15 1 0.5494 -1.5416 10.3565 16 6 1.1877 -3.5506 9.9706 17 7 2.1302 -4.2826 9.4153 18 14 -0.0604 -4.3438 11.1119 19 1 -1.0089 -3.3118 11.6021 20 1 -0.8089 -5.3930 10.3742 21 1 0.6442 -4.9575 12.2661 22 6 2.2440 -0.2728 8.6353 23 6 1.7014 0.4335 7.3889 24 7 2.0183 -0.6905 -1.1962 25 6 1.7656 -1.9901 -1.5221 26 6 2.3799 -2.2584 -2.6921 27 6 3.0441 -1.0844 -3.0988 28 6 2.8055 -0.1415 -2.1647 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2055 33 1 1.6054 -1.7198 1.2951 34 1 2.4892 -1.2154 3.7907 35 1 0.5109 0.4421 4.9370 36 1 2.0312 1.3636 4.8474 37 1 4.0662 0.5340 6.0359 38 1 3.9959 -0.9791 6.9711 39 1 3.9214 -1.0273 5.1936 40 1 0.4138 -1.6824 6.2741 41 1 1.7688 -2.3136 5.3066 42 1 3.1116 -2.6486 7.3292 43 1 1.5347 -3.4515 7.5433 44 1 2.1768 -5.2339 9.5989 45 1 3.3337 -0.2498 8.6236 46 1 1.8775 0.2314 9.5295 47 1 2.1154 1.4402 7.3323 48 1 0.6143 0.4893 7.4460 49 1 1.1737 -2.6841 -0.9439 50 1 2.3687 -3.2015 -3.2184 51 1 3.6356 -0.9620 -3.9941 52 1 3.1746 0.8733 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569707288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:39 Heat of formation + Delta-G solvation = 8.981595 kcal Electronic energy + Delta-G solvation = -29129.753826 eV Core-core repulsion = 25322.667230 eV Total energy + Delta-G solvation = -3807.086595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.16301 -41.09364 -39.90982 -36.74947 -35.87922 -34.68034 -32.73455 -31.57450 -30.84261 -29.63005 -29.36086 -28.53433 -27.59070 -25.69873 -24.01914 -23.66363 -22.40195 -21.54491 -21.22005 -20.30428 -19.62377 -18.65647 -18.27241 -17.57819 -16.97444 -16.78660 -16.67704 -15.87370 -15.58563 -15.53139 -15.36520 -15.09766 -15.02647 -14.77425 -14.45807 -14.34812 -14.14690 -13.86049 -13.66673 -13.43456 -13.18919 -13.10649 -12.99055 -12.91760 -12.73320 -12.67740 -12.57804 -12.35924 -12.32719 -12.22802 -12.09973 -11.88301 -11.79486 -11.45682 -11.16737 -11.04830 -10.86632 -10.49371 -10.04060 -9.49623 -9.01155 -8.62980 -7.86620 -5.29808 1.41499 1.44237 1.47174 1.56691 1.59508 1.84558 2.20291 2.42122 2.51231 3.27278 3.48038 3.71594 3.72787 3.79775 3.87415 3.89061 3.96732 4.14802 4.22673 4.42578 4.43852 4.46060 4.52183 4.53645 4.62827 4.69894 4.72443 4.75642 4.79790 4.84676 4.86506 4.87947 4.95812 4.96487 5.08253 5.14127 5.19015 5.28623 5.32952 5.41636 5.45006 5.45856 5.49556 5.51682 5.57409 5.67948 5.86447 6.14850 6.39455 6.41086 6.52043 6.54928 7.17752 7.20662 7.90567 8.40295 9.19058 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.002207 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.653535 B =12683.671582 C =13323.215273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.102 0.898 4 C -0.144 4.144 5 C 0.519 3.481 6 O -0.574 6.574 7 N -0.714 5.714 8 C 0.142 3.858 9 C -0.054 4.054 10 C -0.136 4.136 11 C -0.116 4.116 12 C 0.178 3.822 13 N -0.610 5.610 14 C -0.259 4.259 15 H 0.062 0.938 16 C -0.050 4.050 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.293 1.293 22 C 0.142 3.858 23 C -0.112 4.112 24 N -0.443 5.443 25 C -0.020 4.020 26 C -0.223 4.223 27 C -0.221 4.221 28 C -0.026 4.026 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.411 0.589 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.007 0.993 43 H 0.047 0.953 44 H 0.249 0.751 45 H 0.021 0.979 46 H 0.046 0.954 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.174 0.826 50 H 0.141 0.859 51 H 0.142 0.858 52 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 8.001 -21.314 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.120 0.880 4 C -0.185 4.185 5 C 0.306 3.694 6 O -0.455 6.455 7 N -0.366 5.366 8 C 0.018 3.982 9 C -0.054 4.054 10 C -0.194 4.194 11 C -0.155 4.155 12 C 0.052 3.948 13 N -0.334 5.334 14 C -0.389 4.389 15 H 0.080 0.920 16 C -0.246 4.246 17 N -0.578 5.578 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.220 1.220 22 C 0.016 3.984 23 C -0.152 4.152 24 N -0.119 5.119 25 C -0.150 4.150 26 C -0.247 4.247 27 C -0.246 4.246 28 C -0.156 4.156 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.025 0.975 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.191 0.809 50 H 0.159 0.841 51 H 0.160 0.840 52 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.272 8.766 -21.030 22.820 hybrid contribution -0.296 -1.212 0.992 1.594 sum 0.976 7.554 -20.038 21.437 Atomic orbital electron populations 1.22207 0.93096 1.03079 1.03485 1.21018 0.95724 0.96471 0.81671 0.88014 1.21971 1.04782 1.01050 0.90652 1.20616 0.78584 0.85224 0.85017 1.90686 1.41524 1.26147 1.87095 1.46029 1.57137 1.28109 1.05344 1.21277 0.99198 0.94786 0.82921 1.20562 0.96320 0.94965 0.93599 1.21867 0.93743 1.02006 1.01745 1.22041 0.99273 0.95752 0.98403 1.20608 0.96061 0.93751 0.84368 1.44307 1.66357 1.08670 1.14028 1.19510 1.22209 0.92059 1.05145 0.92049 1.25700 0.99403 0.98442 1.01024 1.70174 1.32916 1.06015 1.48732 0.85304 0.79142 0.78304 0.78290 1.19411 1.21716 1.22018 1.21049 0.95957 0.84979 0.96374 1.21885 1.00485 0.98531 0.94265 1.44408 1.39204 1.10159 1.18146 1.22086 1.06745 0.86427 0.99759 1.21167 1.05207 0.99926 0.98446 1.21157 1.07282 0.94275 1.01861 1.22219 1.01162 1.00605 0.91570 0.91556 0.90192 0.92208 0.86698 0.86459 0.75164 0.92705 0.91212 0.91639 0.93667 0.91722 0.93886 0.91125 0.97505 0.93495 0.94201 0.96062 0.93501 0.90020 0.92930 0.80867 0.84133 0.84034 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 8.98 71.98 0.65 -2.04 16 2 C 0.15 2.38 2.67 44.99 0.12 2.50 16 3 H 0.10 1.68 7.88 -2.39 -0.02 1.66 16 4 C -0.14 -1.97 5.16 29.85 0.15 -1.82 16 5 C 0.52 10.21 7.55 87.66 0.66 10.87 16 6 O -0.57 -15.15 13.97 -3.06 -0.04 -15.20 16 7 N -0.71 -13.73 4.95 -463.05 -2.29 -16.02 16 8 C 0.14 3.31 4.56 86.38 0.39 3.71 16 9 C -0.05 -1.46 0.53 -52.15 -0.03 -1.49 16 10 C -0.14 -3.44 7.54 71.98 0.54 -2.89 16 11 C -0.12 -3.80 4.75 30.67 0.15 -3.66 16 12 C 0.18 7.95 4.84 86.36 0.42 8.37 16 13 N -0.61 -29.34 2.99 -699.10 -2.09 -31.43 16 14 C -0.26 -14.01 9.59 84.03 0.81 -13.21 16 15 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 16 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 17 N -0.93 -53.92 11.19 21.65 0.24 -53.68 16 18 Si 0.96 44.51 29.59 68.60 2.03 46.54 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 C 0.14 5.53 6.04 86.36 0.52 6.05 16 23 C -0.11 -3.40 4.91 30.67 0.15 -3.25 16 24 N -0.44 -7.31 2.62 -502.02 -1.31 -8.62 16 25 C -0.02 -0.34 10.45 83.21 0.87 0.53 16 26 C -0.22 -4.02 10.86 22.14 0.24 -3.78 16 27 C -0.22 -3.97 10.86 22.14 0.24 -3.73 16 28 C -0.03 -0.44 11.39 83.21 0.95 0.51 16 29 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 30 H 0.08 1.64 5.95 -2.38 -0.01 1.62 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.12 1.28 8.05 -2.39 -0.02 1.26 16 34 H 0.41 6.64 6.16 -92.71 -0.57 6.07 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.04 1.43 4.98 -2.39 -0.01 1.42 16 39 H 0.06 1.36 6.86 -2.39 -0.02 1.34 16 40 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.07 1.93 6.82 -2.39 -0.02 1.92 16 42 H 0.01 0.33 6.69 -2.39 -0.02 0.31 16 43 H 0.05 2.46 6.04 -2.39 -0.01 2.45 16 44 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.02 0.84 6.69 -2.39 -0.02 0.82 16 46 H 0.05 1.84 7.94 -2.39 -0.02 1.82 16 47 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 50 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 51 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 52 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -66.55 397.75 4.11 -62.45 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.33 Total: 21.64 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 7.25 Total: -5.67 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -5.46 Total: -109.76 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.04 Total: -15.20 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -66.55 4.11 -62.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569707288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.427 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds