Wall clock time and date at job start Tue Mar 31 2020 17:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47434 * 2 1 4 4 C 1.53001 * 109.47205 * 239.99644 * 2 1 3 5 5 C 1.50704 * 109.46886 * 65.00001 * 4 2 1 6 6 O 1.21281 * 119.99875 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99847 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99820 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46859 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46072 * 60.02728 * 9 8 7 11 11 C 1.53039 * 109.46033 * 300.06391 * 9 8 7 12 12 C 1.53188 * 109.31259 * 178.61412 * 11 9 8 13 13 N 1.46931 * 108.77532 * 54.63862 * 12 11 9 14 14 C 1.36933 * 120.62831 * 126.41402 * 13 12 11 15 15 H 1.08004 * 119.99657 * 207.65754 * 14 13 12 16 16 C 1.38805 * 120.00424 * 27.65671 * 14 13 12 17 17 N 1.31619 * 120.00219 * 17.38160 * 16 14 13 18 18 Si 1.86804 * 120.00196 * 197.37930 * 16 14 13 19 19 H 1.48501 * 109.47055 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47394 * 120.00036 * 18 16 14 21 21 H 1.48504 * 109.46792 * 240.00250 * 18 16 14 22 22 C 1.46924 * 118.73651 * 306.38812 * 13 12 11 23 23 C 1.53040 * 109.45780 * 180.02562 * 9 8 7 24 24 N 1.46498 * 109.46594 * 120.00003 * 2 1 3 25 25 C 1.36340 * 125.64112 * 59.69195 * 24 2 1 26 26 C 1.34845 * 108.21960 * 179.82849 * 25 24 2 27 27 C 1.40886 * 107.41984 * 0.42366 * 26 25 24 28 28 C 1.34844 * 107.41686 * 359.73742 * 27 26 25 29 29 H 1.08997 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46916 * 300.00469 * 1 2 3 31 31 H 1.09009 * 109.46971 * 59.99922 * 1 2 3 32 32 H 1.08997 * 109.46888 * 185.00238 * 4 2 1 33 33 H 1.08999 * 109.46865 * 305.00257 * 4 2 1 34 34 H 0.96998 * 119.99958 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.46673 * 299.99851 * 8 7 5 36 36 H 1.08997 * 109.47120 * 60.00042 * 8 7 5 37 37 H 1.08992 * 109.46766 * 59.99911 * 10 9 8 38 38 H 1.08998 * 109.46590 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.46765 * 299.99494 * 10 9 8 40 40 H 1.08991 * 109.50123 * 298.57195 * 11 9 8 41 41 H 1.09001 * 109.49477 * 58.66804 * 11 9 8 42 42 H 1.09001 * 109.58926 * 294.84896 * 12 11 9 43 43 H 1.09001 * 109.58577 * 174.42529 * 12 11 9 44 44 H 0.97001 * 120.00275 * 180.02562 * 17 16 14 45 45 H 1.08992 * 109.58867 * 293.82604 * 22 13 12 46 46 H 1.09000 * 109.70263 * 173.46193 * 22 13 12 47 47 H 1.09000 * 109.49788 * 301.33534 * 23 9 8 48 48 H 1.08998 * 109.50050 * 61.43239 * 23 9 8 49 49 H 1.07999 * 125.88816 * 359.96198 * 25 24 2 50 50 H 1.08007 * 126.28750 * 180.16287 * 26 25 24 51 51 H 1.08003 * 126.29527 * 179.73460 * 27 26 25 52 52 H 1.07998 * 125.89305 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5983 0.3653 -4.8932 9 6 2.1082 -0.3561 -6.1424 10 6 1.4969 -1.7572 -6.2072 11 6 3.6332 -0.4678 -6.0799 12 6 4.1371 -1.2209 -7.3150 13 7 3.6303 -0.5478 -8.5187 14 6 4.4880 -0.1518 -9.5100 15 1 4.2347 0.6885 -10.1395 16 6 5.6829 -0.8304 -9.7059 17 7 5.8483 -2.0326 -9.1964 18 14 7.0565 -0.0373 -10.6928 19 1 6.6228 1.3061 -11.1538 20 1 8.2646 0.0976 -9.8400 21 1 7.3736 -0.8854 -11.8699 22 6 2.1857 -0.3081 -8.6387 23 6 1.7042 0.4351 -7.3886 24 7 2.0182 -0.6906 1.1962 25 6 1.7558 -1.9867 1.5280 26 6 2.3797 -2.2586 2.6920 27 6 3.0440 -1.0846 3.0988 28 6 2.8054 -0.1417 2.1648 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 3.1263 -0.7996 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 2.4892 -1.2154 -3.7907 35 1 0.5120 0.4435 -4.9372 36 1 2.0329 1.3638 -4.8469 37 1 0.4107 -1.6779 -6.2511 38 1 1.8605 -2.2713 -7.0968 39 1 1.7846 -2.3204 -5.3194 40 1 4.0706 0.5303 -6.0587 41 1 3.9216 -1.0109 -5.1799 42 1 3.7735 -2.2481 -7.2903 43 1 5.2271 -1.2171 -7.3258 44 1 6.6835 -2.5066 -9.3330 45 1 1.6629 -1.2609 -8.7218 46 1 1.9858 0.2969 -9.5231 47 1 0.6193 0.5348 -7.4204 48 1 2.1601 1.4246 -7.3550 49 1 1.1539 -2.6773 0.9559 50 1 2.3685 -3.2017 3.2183 51 1 3.6355 -0.9622 3.9941 52 1 3.1740 0.8733 2.1812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569707289.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:44 Heat of formation + Delta-G solvation = 24.645601 kcal Electronic energy + Delta-G solvation = -29117.391439 eV Core-core repulsion = 25310.984085 eV Total energy + Delta-G solvation = -3806.407353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.47243 -40.09567 -38.63948 -35.54471 -34.91435 -33.25647 -31.06178 -30.09544 -29.96892 -28.93905 -28.51358 -27.14596 -26.42255 -24.08762 -22.99517 -22.34420 -20.94295 -20.68478 -20.41602 -19.60614 -18.10068 -17.87188 -16.92376 -16.35866 -16.08354 -15.78808 -14.90691 -14.86717 -14.62323 -14.41428 -14.08403 -13.88222 -13.74034 -13.52353 -13.46189 -13.23172 -12.92138 -12.86542 -12.67275 -12.46512 -12.29350 -12.23516 -11.89540 -11.67954 -11.52973 -11.43808 -11.35865 -11.23871 -10.82776 -10.74465 -10.59120 -10.26690 -10.22635 -10.01030 -9.85521 -9.57147 -9.47036 -9.07184 -8.79723 -8.48978 -8.32485 -6.69964 -5.83065 -3.24425 2.10412 2.45031 2.58203 2.90609 3.24981 3.33997 3.42502 3.44423 4.15967 4.42395 4.46428 4.58875 4.79921 4.87475 5.00790 5.05229 5.06470 5.10957 5.15864 5.17068 5.35315 5.36541 5.43695 5.46593 5.53972 5.62404 5.69857 5.77077 5.86510 5.90045 6.01800 6.04255 6.07780 6.12469 6.16618 6.25000 6.35240 6.42124 6.48271 6.54364 6.63190 6.72464 6.81667 6.83321 6.94538 7.08154 7.21217 7.30609 7.39444 7.61585 7.76584 8.06368 8.41166 9.17868 9.81456 10.37695 11.25385 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002220 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.604619 B =12607.237018 C =13412.235372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.106 0.894 4 C -0.154 4.154 5 C 0.516 3.484 6 O -0.544 6.544 7 N -0.718 5.718 8 C 0.129 3.871 9 C -0.064 4.064 10 C -0.142 4.142 11 C -0.129 4.129 12 C 0.171 3.829 13 N -0.591 5.591 14 C -0.250 4.250 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.146 3.854 23 C -0.120 4.120 24 N -0.443 5.443 25 C -0.015 4.015 26 C -0.204 4.204 27 C -0.205 4.205 28 C -0.015 4.015 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.403 0.597 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.021 0.979 43 H 0.086 0.914 44 H 0.253 0.747 45 H 0.021 0.979 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.157 0.843 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.537 0.446 19.294 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.124 0.876 4 C -0.195 4.195 5 C 0.302 3.698 6 O -0.423 6.423 7 N -0.370 5.370 8 C 0.006 3.994 9 C -0.064 4.064 10 C -0.199 4.199 11 C -0.169 4.169 12 C 0.045 3.955 13 N -0.314 5.314 14 C -0.380 4.380 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.019 3.981 23 C -0.160 4.160 24 N -0.119 5.119 25 C -0.144 4.144 26 C -0.229 4.229 27 C -0.230 4.230 28 C -0.145 4.145 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.239 0.761 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.174 0.826 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.969 1.265 19.002 21.496 hybrid contribution 1.120 -0.160 -0.484 1.231 sum -8.849 1.105 18.518 20.553 Atomic orbital electron populations 1.22287 0.92813 1.02807 1.04432 1.21085 0.96007 0.96637 0.81533 0.87585 1.22022 1.04015 1.00879 0.92552 1.20223 0.79473 0.85610 0.84535 1.90682 1.40339 1.24556 1.86684 1.46113 1.57085 1.27956 1.05804 1.21569 0.99462 0.95095 0.83264 1.20701 0.96957 0.95494 0.93296 1.21940 0.99594 0.96080 1.02291 1.22250 0.93140 1.01499 0.99993 1.20796 1.00141 0.92160 0.82408 1.44039 1.00250 1.69243 1.17874 1.19227 0.99239 1.08876 1.10646 0.91691 1.25017 1.00139 0.95040 0.99520 1.70035 1.25251 1.10598 1.48897 0.86254 0.82404 0.78884 0.79430 1.20276 1.21587 1.21748 1.20910 0.86349 0.96450 0.94368 1.22001 0.99005 0.99328 0.95643 1.44368 1.39111 1.10323 1.18052 1.21730 1.06638 0.86326 0.99738 1.20884 1.04612 0.99318 0.98072 1.20882 1.06902 0.93954 1.01219 1.21865 1.01297 0.99795 0.91503 0.92352 0.91994 0.88612 0.88019 0.88159 0.76131 0.91844 0.91626 0.93406 0.90669 0.93751 0.92550 0.93751 0.96097 0.89611 0.93725 0.96162 0.92891 0.92945 0.92111 0.82581 0.84987 0.84966 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.97 37.16 0.33 -1.12 16 2 C 0.15 1.32 2.67 -67.93 -0.18 1.14 16 3 H 0.11 1.00 7.88 -51.93 -0.41 0.59 16 4 C -0.15 -1.28 5.17 -27.88 -0.14 -1.43 16 5 C 0.52 5.76 7.55 -10.98 -0.08 5.68 16 6 O -0.54 -7.70 13.97 5.56 0.08 -7.62 16 7 N -0.72 -7.99 4.95 -60.29 -0.30 -8.29 16 8 C 0.13 1.68 4.56 -4.04 -0.02 1.67 16 9 C -0.06 -0.93 0.53 -154.47 -0.08 -1.01 16 10 C -0.14 -1.95 7.54 37.16 0.28 -1.67 16 11 C -0.13 -2.21 4.75 -26.61 -0.13 -2.34 16 12 C 0.17 3.77 4.84 -3.71 -0.02 3.76 16 13 N -0.59 -14.04 2.99 -172.32 -0.52 -14.56 16 14 C -0.25 -6.67 9.59 -15.06 -0.14 -6.82 16 15 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 16 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 17 N -0.90 -25.49 11.19 55.49 0.62 -24.87 16 18 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.15 2.86 6.05 -3.71 -0.02 2.84 16 23 C -0.12 -1.92 4.91 -26.61 -0.13 -2.05 16 24 N -0.44 -4.13 2.62 -110.03 -0.29 -4.41 16 25 C -0.01 -0.13 10.45 -16.75 -0.18 -0.31 16 26 C -0.20 -1.98 10.86 -39.78 -0.43 -2.42 16 27 C -0.20 -2.01 10.86 -39.78 -0.43 -2.44 16 28 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 29 H 0.06 0.46 7.91 -51.93 -0.41 0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.99 5.95 -51.92 -0.31 0.68 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.40 3.97 6.16 -40.82 -0.25 3.72 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.24 4.98 -51.93 -0.26 0.98 16 39 H 0.04 0.53 6.86 -51.93 -0.36 0.17 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.04 0.66 6.82 -51.93 -0.35 0.30 16 42 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 43 H 0.09 2.19 6.04 -51.93 -0.31 1.88 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 46 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 50 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 51 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 52 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -30.31 397.74 -9.90 -40.22 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.81 Total: 4.13 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.65 Total: -6.90 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.48 Total: -52.13 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.08 Total: -7.62 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.31 -9.90 -40.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569707289.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.861 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds