Wall clock time and date at job start Tue Mar 31 2020 17:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47434 * 2 1 4 4 C 1.53001 * 109.47205 * 239.99644 * 2 1 3 5 5 C 1.50704 * 109.46886 * 65.00001 * 4 2 1 6 6 O 1.21281 * 119.99875 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99847 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99820 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46859 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46072 * 60.02728 * 9 8 7 11 11 C 1.53039 * 109.46033 * 300.06391 * 9 8 7 12 12 C 1.53188 * 109.31259 * 178.61412 * 11 9 8 13 13 N 1.46931 * 108.77532 * 54.63862 * 12 11 9 14 14 C 1.36933 * 120.62831 * 126.41402 * 13 12 11 15 15 H 1.08004 * 119.99657 * 207.65754 * 14 13 12 16 16 C 1.38805 * 120.00424 * 27.65671 * 14 13 12 17 17 N 1.31619 * 120.00219 * 17.38160 * 16 14 13 18 18 Si 1.86804 * 120.00196 * 197.37930 * 16 14 13 19 19 H 1.48501 * 109.47055 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47394 * 120.00036 * 18 16 14 21 21 H 1.48504 * 109.46792 * 240.00250 * 18 16 14 22 22 C 1.46924 * 118.73651 * 306.38812 * 13 12 11 23 23 C 1.53040 * 109.45780 * 180.02562 * 9 8 7 24 24 N 1.46498 * 109.46594 * 120.00003 * 2 1 3 25 25 C 1.36340 * 125.64112 * 59.69195 * 24 2 1 26 26 C 1.34845 * 108.21960 * 179.82849 * 25 24 2 27 27 C 1.40886 * 107.41984 * 0.42366 * 26 25 24 28 28 C 1.34844 * 107.41686 * 359.73742 * 27 26 25 29 29 H 1.08997 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46916 * 300.00469 * 1 2 3 31 31 H 1.09009 * 109.46971 * 59.99922 * 1 2 3 32 32 H 1.08997 * 109.46888 * 185.00238 * 4 2 1 33 33 H 1.08999 * 109.46865 * 305.00257 * 4 2 1 34 34 H 0.96998 * 119.99958 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.46673 * 299.99851 * 8 7 5 36 36 H 1.08997 * 109.47120 * 60.00042 * 8 7 5 37 37 H 1.08992 * 109.46766 * 59.99911 * 10 9 8 38 38 H 1.08998 * 109.46590 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.46765 * 299.99494 * 10 9 8 40 40 H 1.08991 * 109.50123 * 298.57195 * 11 9 8 41 41 H 1.09001 * 109.49477 * 58.66804 * 11 9 8 42 42 H 1.09001 * 109.58926 * 294.84896 * 12 11 9 43 43 H 1.09001 * 109.58577 * 174.42529 * 12 11 9 44 44 H 0.97001 * 120.00275 * 180.02562 * 17 16 14 45 45 H 1.08992 * 109.58867 * 293.82604 * 22 13 12 46 46 H 1.09000 * 109.70263 * 173.46193 * 22 13 12 47 47 H 1.09000 * 109.49788 * 301.33534 * 23 9 8 48 48 H 1.08998 * 109.50050 * 61.43239 * 23 9 8 49 49 H 1.07999 * 125.88816 * 359.96198 * 25 24 2 50 50 H 1.08007 * 126.28750 * 180.16287 * 26 25 24 51 51 H 1.08003 * 126.29527 * 179.73460 * 27 26 25 52 52 H 1.07998 * 125.89305 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5983 0.3653 -4.8932 9 6 2.1082 -0.3561 -6.1424 10 6 1.4969 -1.7572 -6.2072 11 6 3.6332 -0.4678 -6.0799 12 6 4.1371 -1.2209 -7.3150 13 7 3.6303 -0.5478 -8.5187 14 6 4.4880 -0.1518 -9.5100 15 1 4.2347 0.6885 -10.1395 16 6 5.6829 -0.8304 -9.7059 17 7 5.8483 -2.0326 -9.1964 18 14 7.0565 -0.0373 -10.6928 19 1 6.6228 1.3061 -11.1538 20 1 8.2646 0.0976 -9.8400 21 1 7.3736 -0.8854 -11.8699 22 6 2.1857 -0.3081 -8.6387 23 6 1.7042 0.4351 -7.3886 24 7 2.0182 -0.6906 1.1962 25 6 1.7558 -1.9867 1.5280 26 6 2.3797 -2.2586 2.6920 27 6 3.0440 -1.0846 3.0988 28 6 2.8054 -0.1417 2.1648 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 3.1263 -0.7996 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 2.4892 -1.2154 -3.7907 35 1 0.5120 0.4435 -4.9372 36 1 2.0329 1.3638 -4.8469 37 1 0.4107 -1.6779 -6.2511 38 1 1.8605 -2.2713 -7.0968 39 1 1.7846 -2.3204 -5.3194 40 1 4.0706 0.5303 -6.0587 41 1 3.9216 -1.0109 -5.1799 42 1 3.7735 -2.2481 -7.2903 43 1 5.2271 -1.2171 -7.3258 44 1 6.6835 -2.5066 -9.3330 45 1 1.6629 -1.2609 -8.7218 46 1 1.9858 0.2969 -9.5231 47 1 0.6193 0.5348 -7.4204 48 1 2.1601 1.4246 -7.3550 49 1 1.1539 -2.6773 0.9559 50 1 2.3685 -3.2017 3.2183 51 1 3.6355 -0.9622 3.9941 52 1 3.1740 0.8733 2.1812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569707289.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:43 Heat of formation + Delta-G solvation = 8.941181 kcal Electronic energy + Delta-G solvation = -29118.072433 eV Core-core repulsion = 25310.984085 eV Total energy + Delta-G solvation = -3807.088348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.16346 -41.09473 -39.91138 -36.75022 -35.87851 -34.68161 -32.73619 -31.57716 -30.84232 -29.63409 -29.35302 -28.52771 -27.59060 -25.69859 -24.02574 -23.65709 -22.40366 -21.54330 -21.22556 -20.30447 -19.62503 -18.65178 -18.27754 -17.57966 -16.97172 -16.78779 -16.69054 -15.83579 -15.60928 -15.47888 -15.44414 -15.09569 -15.01847 -14.77234 -14.47761 -14.28743 -14.16873 -13.86526 -13.67622 -13.42829 -13.18192 -13.10182 -12.98980 -12.91937 -12.73419 -12.67316 -12.57941 -12.37459 -12.32366 -12.21183 -12.09680 -11.88535 -11.79706 -11.45532 -11.17150 -11.04689 -10.86773 -10.49679 -10.03994 -9.49579 -9.01277 -8.63256 -7.86855 -5.30053 1.41481 1.43980 1.46869 1.56334 1.59804 1.84319 2.20204 2.42383 2.50965 3.27074 3.47944 3.71764 3.72825 3.80366 3.87862 3.88352 3.97023 4.14898 4.22866 4.42784 4.43610 4.45832 4.53036 4.53569 4.62893 4.69973 4.72574 4.76068 4.79982 4.85063 4.86840 4.88473 4.96119 4.96435 5.08416 5.14466 5.19622 5.28880 5.32984 5.41703 5.44810 5.45939 5.49439 5.51977 5.57260 5.67688 5.86183 6.14730 6.39256 6.40807 6.52153 6.55018 7.17492 7.20712 7.90380 8.40066 9.18798 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002220 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.604619 B =12607.237018 C =13412.235372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.097 0.903 4 C -0.144 4.144 5 C 0.519 3.481 6 O -0.574 6.574 7 N -0.714 5.714 8 C 0.142 3.858 9 C -0.054 4.054 10 C -0.136 4.136 11 C -0.116 4.116 12 C 0.178 3.822 13 N -0.610 5.610 14 C -0.259 4.259 15 H 0.062 0.938 16 C -0.050 4.050 17 N -0.932 5.932 18 Si 0.960 3.040 19 H -0.270 1.270 20 H -0.291 1.291 21 H -0.293 1.293 22 C 0.142 3.858 23 C -0.112 4.112 24 N -0.444 5.444 25 C -0.018 4.018 26 C -0.224 4.224 27 C -0.221 4.221 28 C -0.029 4.029 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.008 0.992 43 H 0.046 0.954 44 H 0.249 0.751 45 H 0.022 0.978 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.051 0.949 49 H 0.178 0.822 50 H 0.142 0.858 51 H 0.141 0.859 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 0.393 20.543 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.115 0.885 4 C -0.184 4.184 5 C 0.306 3.694 6 O -0.455 6.455 7 N -0.366 5.366 8 C 0.018 3.982 9 C -0.054 4.054 10 C -0.193 4.193 11 C -0.155 4.155 12 C 0.052 3.948 13 N -0.334 5.334 14 C -0.389 4.389 15 H 0.079 0.921 16 C -0.246 4.246 17 N -0.578 5.578 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.220 1.220 22 C 0.016 3.984 23 C -0.152 4.152 24 N -0.119 5.119 25 C -0.148 4.148 26 C -0.248 4.248 27 C -0.246 4.246 28 C -0.158 4.158 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.065 0.935 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.195 0.805 50 H 0.160 0.840 51 H 0.159 0.841 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.115 1.215 20.261 23.141 hybrid contribution 1.424 -0.149 -0.872 1.677 sum -9.690 1.067 19.389 21.702 Atomic orbital electron populations 1.22199 0.92716 1.03269 1.03502 1.21029 0.95997 0.96313 0.81678 0.88460 1.21969 1.04565 1.01263 0.90631 1.20615 0.78599 0.85213 0.85010 1.90684 1.41704 1.25995 1.87076 1.46030 1.57148 1.28077 1.05364 1.21277 0.99652 0.94310 0.82944 1.20561 0.94927 0.96288 0.93668 1.21866 1.00589 0.95023 1.01854 1.22042 0.95041 1.00045 0.98385 1.20606 0.97792 0.92240 0.84136 1.44306 1.01793 1.69345 1.17936 1.19507 1.00005 1.08511 1.10900 0.92057 1.25696 1.02154 0.95572 1.01134 1.70170 1.25425 1.11745 1.50496 0.85309 0.79637 0.78238 0.77891 1.19411 1.21746 1.21977 1.21051 0.84211 0.96862 0.96228 1.21886 1.00654 0.98305 0.94332 1.44409 1.39042 1.10451 1.18035 1.22112 1.06435 0.86460 0.99764 1.21170 1.05066 0.99845 0.98715 1.21157 1.07315 0.94320 1.01803 1.22195 1.01477 1.00548 0.91612 0.91171 0.92316 0.90071 0.87208 0.85934 0.75160 0.91052 0.92873 0.91531 0.93682 0.91652 0.94007 0.91199 0.97427 0.93558 0.94200 0.95986 0.93506 0.89943 0.93016 0.80487 0.84015 0.84150 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.97 71.98 0.65 -1.83 16 2 C 0.15 2.37 2.67 44.99 0.12 2.49 16 3 H 0.10 1.70 7.88 -2.39 -0.02 1.68 16 4 C -0.14 -1.97 5.17 29.85 0.15 -1.81 16 5 C 0.52 10.21 7.55 87.66 0.66 10.87 16 6 O -0.57 -15.17 13.97 -3.03 -0.04 -15.21 16 7 N -0.71 -13.72 4.95 -463.06 -2.29 -16.01 16 8 C 0.14 3.31 4.56 86.38 0.39 3.71 16 9 C -0.05 -1.46 0.53 -52.15 -0.03 -1.48 16 10 C -0.14 -3.39 7.54 71.98 0.54 -2.84 16 11 C -0.12 -3.85 4.75 30.67 0.15 -3.70 16 12 C 0.18 7.99 4.84 86.36 0.42 8.41 16 13 N -0.61 -29.41 2.99 -699.10 -2.09 -31.50 16 14 C -0.26 -14.05 9.59 84.03 0.81 -13.24 16 15 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 16 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 17 N -0.93 -54.05 11.19 21.65 0.24 -53.80 16 18 Si 0.96 44.63 29.59 68.60 2.03 46.66 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 C 0.14 5.53 6.05 86.37 0.52 6.05 16 23 C -0.11 -3.40 4.91 30.67 0.15 -3.25 16 24 N -0.44 -7.37 2.62 -502.01 -1.31 -8.68 16 25 C -0.02 -0.29 10.45 83.21 0.87 0.58 16 26 C -0.22 -3.99 10.86 22.14 0.24 -3.75 16 27 C -0.22 -4.08 10.86 22.14 0.24 -3.84 16 28 C -0.03 -0.51 11.39 83.21 0.95 0.44 16 29 H 0.07 0.91 7.91 -2.39 -0.02 0.89 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 1.55 5.95 -2.38 -0.01 1.54 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.18 8.06 -2.39 -0.02 1.16 16 34 H 0.41 6.63 6.16 -92.71 -0.57 6.06 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.42 4.98 -2.39 -0.01 1.41 16 39 H 0.06 1.34 6.86 -2.39 -0.02 1.33 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.94 6.82 -2.39 -0.02 1.93 16 42 H 0.01 0.36 6.69 -2.39 -0.02 0.35 16 43 H 0.05 2.44 6.04 -2.39 -0.01 2.42 16 44 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.02 0.86 6.69 -2.39 -0.02 0.85 16 46 H 0.05 1.84 7.94 -2.39 -0.02 1.82 16 47 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 50 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 51 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 52 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -66.92 397.74 4.11 -62.81 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.33 Total: 21.29 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 7.25 Total: -5.56 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -5.46 Total: -110.00 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.04 Total: -15.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.92 4.11 -62.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569707289.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.754 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds