Wall clock time and date at job start Tue Mar 31 2020 17:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47085 * 2 1 4 4 C 1.36447 * 124.84810 * 90.02601 * 3 2 1 5 5 C 1.50698 * 125.57618 * 0.02562 * 4 3 2 6 6 C 1.34489 * 108.85664 * 179.97438 * 4 3 2 7 7 C 1.46691 * 106.33046 * 0.02562 * 6 4 3 8 8 C 1.47264 * 126.93866 * 179.97438 * 7 6 4 9 9 O 1.21632 * 119.99646 * 146.14735 * 8 7 6 10 10 N 1.34776 * 120.00020 * 326.14055 * 8 7 6 11 11 C 1.46921 * 120.63354 * 6.16166 * 10 8 7 12 12 C 1.52765 * 109.01208 * 233.58579 * 11 10 8 13 13 C 1.53036 * 109.37940 * 305.58553 * 12 11 10 14 14 C 1.53046 * 109.53896 * 61.24322 * 13 12 11 15 15 C 1.46935 * 120.62843 * 186.44415 * 10 8 7 16 16 H 1.08996 * 109.58216 * 246.15206 * 15 10 8 17 17 C 1.52995 * 109.58545 * 6.43733 * 15 10 8 18 18 N 1.46496 * 109.47203 * 288.49234 * 17 15 10 19 19 C 1.36946 * 119.99689 * 184.13299 * 18 17 15 20 20 H 1.07996 * 120.00120 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99381 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00247 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99617 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47126 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47175 * 119.99629 * 23 21 19 26 26 H 1.48502 * 109.47091 * 239.99781 * 23 21 19 27 27 C 1.34659 * 124.85445 * 270.02963 * 3 2 1 28 28 C 1.50702 * 125.79740 * 359.97438 * 27 3 2 29 29 H 1.09002 * 109.46978 * 299.99428 * 1 2 3 30 30 H 1.08998 * 109.47791 * 59.99785 * 1 2 3 31 31 H 1.09002 * 109.47246 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46458 * 240.00518 * 2 1 3 33 33 H 1.08993 * 109.47373 * 120.00455 * 2 1 3 34 34 H 1.08993 * 109.47063 * 269.97756 * 5 4 3 35 35 H 1.09004 * 109.46993 * 29.96986 * 5 4 3 36 36 H 1.08995 * 109.47844 * 149.96972 * 5 4 3 37 37 H 1.08000 * 126.83517 * 179.73245 * 6 4 3 38 38 H 1.08999 * 109.58393 * 353.41977 * 11 10 8 39 39 H 1.08996 * 109.58646 * 113.84105 * 11 10 8 40 40 H 1.08994 * 109.56294 * 185.55599 * 12 11 10 41 41 H 1.08992 * 109.38639 * 65.51488 * 12 11 10 42 42 H 1.09000 * 109.46648 * 301.22297 * 13 12 11 43 43 H 1.08999 * 109.46309 * 181.25896 * 13 12 11 44 44 H 1.08997 * 109.49881 * 178.68444 * 14 13 12 45 45 H 1.08997 * 109.49925 * 58.57836 * 14 13 12 46 46 H 1.09004 * 109.47418 * 48.49859 * 17 15 10 47 47 H 1.09000 * 109.46970 * 168.48978 * 17 15 10 48 48 H 0.96993 * 120.00590 * 4.14172 * 18 17 15 49 49 H 0.97002 * 119.99613 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.47021 * 90.00577 * 28 27 3 51 51 H 1.08999 * 109.46884 * 209.99752 * 28 27 3 52 52 H 1.08995 * 109.47273 * 330.00354 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2787 2.1161 1.1198 5 6 2.1115 1.6397 2.5397 6 6 2.7100 3.3349 0.7493 7 6 2.7120 3.3434 -0.7176 8 6 3.1056 4.4582 -1.5956 9 8 3.6471 4.2313 -2.6609 10 7 2.8657 5.7298 -1.2189 11 6 2.3367 6.0270 0.1192 12 6 1.0787 6.8821 -0.0217 13 6 1.3982 8.1212 -0.8611 14 6 1.8504 7.6903 -2.2583 15 6 3.1225 6.8448 -2.1407 16 1 3.9352 7.4593 -1.7534 17 6 3.5056 6.2952 -3.5162 18 7 4.8475 5.7109 -3.4522 19 6 5.4396 5.2296 -4.5894 20 1 4.9175 5.2811 -5.5333 21 6 6.7109 4.6754 -4.5286 22 7 7.3473 4.6131 -3.3782 23 14 7.5189 4.0195 -6.0798 24 1 6.6019 4.2067 -7.2327 25 1 8.7841 4.7563 -6.3284 26 1 7.8129 2.5737 -5.9113 27 6 2.2743 2.1069 -1.1050 28 6 2.1077 1.6363 -2.5269 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.1023 1.8673 2.8828 35 1 2.2757 0.5630 2.5833 36 1 2.8354 2.1438 3.1798 37 1 2.9934 4.1474 1.4018 38 1 2.0889 5.0961 0.6291 39 1 3.0840 6.5734 0.6945 40 1 0.7344 7.1903 0.9654 41 1 0.2991 6.3005 -0.5137 42 1 2.1947 8.6896 -0.3809 43 1 0.5072 8.7435 -0.9438 44 1 2.0555 8.5737 -2.8629 45 1 1.0640 7.1007 -2.7295 46 1 2.7895 5.5291 -3.8138 47 1 3.4961 7.1044 -4.2463 48 1 5.3165 5.6648 -2.6045 49 1 8.2358 4.2262 -3.3359 50 1 1.0985 1.8651 -2.8695 51 1 2.8315 2.1436 -3.1647 52 1 2.2724 0.5599 -2.5750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570087685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:22 Heat of formation + Delta-G solvation = 44.528462 kcal Electronic energy + Delta-G solvation = -31035.001871 eV Core-core repulsion = 27229.456704 eV Total energy + Delta-G solvation = -3805.545167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.46916 -40.93842 -37.96967 -36.38197 -35.03597 -33.69750 -33.57141 -33.38963 -31.50787 -30.18580 -29.90633 -27.75467 -26.20256 -25.19441 -24.80912 -24.22850 -22.98769 -22.17906 -21.22738 -20.41233 -19.11283 -18.64881 -17.60528 -17.09147 -16.64586 -16.59772 -16.19263 -15.72853 -15.61028 -15.41136 -15.17111 -14.98559 -14.72162 -14.47001 -14.19141 -14.12310 -13.97724 -13.80501 -13.70136 -13.59368 -13.40235 -13.36281 -13.07049 -13.05516 -12.88908 -12.80561 -12.55996 -12.43496 -12.20672 -12.09071 -12.06428 -11.99321 -11.80803 -11.67177 -11.34394 -11.22215 -10.81058 -9.90006 -9.32330 -9.23646 -8.79384 -8.52028 -7.78881 -4.95836 1.04213 1.42231 1.45459 1.54758 1.54851 1.91887 2.42175 2.63448 2.72313 3.53560 3.76017 3.81659 3.85505 3.90249 3.99281 4.04392 4.12737 4.19310 4.21319 4.36751 4.40445 4.41652 4.46849 4.51877 4.54802 4.63136 4.66350 4.68719 4.79246 4.83320 4.87208 4.88401 4.90358 5.03069 5.05578 5.07741 5.12453 5.16254 5.16664 5.18687 5.25013 5.26298 5.33866 5.40352 5.52590 5.56272 5.92388 6.03109 6.25434 6.41225 6.50008 6.88530 7.47312 7.82607 8.29581 8.52901 9.46824 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.004850 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.454682 B = 5771.862071 C = 7793.648218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.085 3.915 3 N -0.434 5.434 4 C 0.020 3.980 5 C -0.077 4.077 6 C -0.198 4.198 7 C -0.244 4.244 8 C 0.539 3.461 9 O -0.508 6.508 10 N -0.608 5.608 11 C 0.081 3.919 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.117 4.117 15 C 0.146 3.854 16 H 0.053 0.947 17 C 0.169 3.831 18 N -0.696 5.696 19 C -0.202 4.202 20 H 0.061 0.939 21 C -0.088 4.088 22 N -0.976 5.976 23 Si 0.966 3.034 24 H -0.270 1.270 25 H -0.293 1.293 26 H -0.301 1.301 27 C 0.073 3.927 28 C -0.085 4.085 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.012 0.988 47 H 0.015 0.985 48 H 0.366 0.634 49 H 0.242 0.758 50 H 0.079 0.921 51 H 0.059 0.941 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.944 -4.773 16.166 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.035 4.035 3 N -0.111 5.111 4 C -0.089 4.089 5 C -0.134 4.134 6 C -0.221 4.221 7 C -0.254 4.254 8 C 0.327 3.673 9 O -0.382 6.382 10 N -0.344 5.344 11 C -0.040 4.040 12 C -0.162 4.162 13 C -0.150 4.150 14 C -0.156 4.156 15 C 0.042 3.958 16 H 0.071 0.929 17 C 0.043 3.957 18 N -0.336 5.336 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.279 4.279 22 N -0.631 5.631 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.220 1.220 26 H -0.229 1.229 27 C -0.043 4.043 28 C -0.143 4.143 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.177 0.823 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.030 0.970 47 H 0.033 0.967 48 H 0.197 0.803 49 H 0.051 0.949 50 H 0.097 0.903 51 H 0.077 0.923 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.797 -5.276 15.395 26.407 hybrid contribution 1.286 -0.323 -0.936 1.623 sum -19.510 -5.599 14.459 24.921 Atomic orbital electron populations 1.22090 0.92931 1.04152 1.02550 1.22171 0.96650 0.79127 1.05563 1.43777 1.50509 1.12653 1.04164 1.20766 1.06260 0.91809 0.90085 1.20426 1.03983 1.02036 0.86982 1.22013 1.09864 0.98224 0.92031 1.20408 1.15203 0.95165 0.94600 1.18149 0.79066 0.83127 0.86964 1.91287 1.38694 1.84096 1.24114 1.47810 1.66270 1.04580 1.15710 1.22433 0.95793 1.02575 0.83205 1.21790 0.96666 0.96225 1.01548 1.21499 1.01975 0.97622 0.93871 1.21842 0.95454 0.99087 0.99236 1.21307 0.97430 0.87702 0.89338 0.92853 1.20789 0.87464 0.93380 0.94096 1.42291 1.14036 1.70400 1.06874 1.19529 0.96810 1.28582 0.88591 0.92082 1.25350 0.98665 1.04482 0.99392 1.69863 1.13752 1.54151 1.25287 0.85131 0.78199 0.77111 0.79861 1.19436 1.22002 1.22857 1.20146 1.03264 0.91088 0.89817 1.20365 1.02742 1.01612 0.89552 0.91629 0.93344 0.88431 0.89139 0.86937 0.89302 0.90435 0.89417 0.82333 0.86540 0.92089 0.88317 0.92599 0.91519 0.89672 0.90033 0.92283 0.97039 0.96694 0.80272 0.94943 0.90254 0.92251 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.24 71.98 0.74 -1.15 16 2 C 0.08 1.31 6.30 86.38 0.54 1.86 16 3 N -0.43 -10.70 2.68 -495.50 -1.33 -12.03 16 4 C 0.02 0.47 6.85 40.98 0.28 0.75 16 5 C -0.08 -1.02 10.06 71.24 0.72 -0.30 16 6 C -0.20 -5.76 8.63 23.62 0.20 -5.55 16 7 C -0.24 -9.14 5.77 -19.04 -0.11 -9.25 16 8 C 0.54 23.92 7.10 86.62 0.62 24.53 16 9 O -0.51 -27.84 8.92 -4.13 -0.04 -27.87 16 10 N -0.61 -22.53 2.98 -799.87 -2.38 -24.92 16 11 C 0.08 2.17 5.73 86.22 0.49 2.67 16 12 C -0.12 -2.53 6.07 30.53 0.19 -2.35 16 13 C -0.11 -2.33 5.89 30.62 0.18 -2.14 16 14 C -0.12 -3.26 5.36 30.67 0.16 -3.10 16 15 C 0.15 5.54 2.91 44.97 0.13 5.68 16 16 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 17 C 0.17 8.17 4.89 86.38 0.42 8.59 16 18 N -0.70 -41.22 3.13 -343.46 -1.08 -42.30 16 19 C -0.20 -12.94 9.62 84.03 0.81 -12.13 16 20 H 0.06 3.83 7.83 -2.91 -0.02 3.80 16 21 C -0.09 -5.75 5.50 84.86 0.47 -5.28 16 22 N -0.98 -67.24 13.06 21.65 0.28 -66.95 16 23 Si 0.97 51.98 29.55 68.60 2.03 54.01 16 24 H -0.27 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 26 H -0.30 -16.22 7.11 99.48 0.71 -15.51 16 27 C 0.07 2.42 6.88 41.78 0.29 2.71 16 28 C -0.09 -2.76 9.84 71.24 0.70 -2.06 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.39 6.88 -2.39 -0.02 1.38 16 33 H 0.11 1.21 6.90 -2.39 -0.02 1.19 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.79 6.94 -2.39 -0.02 0.77 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.16 4.02 6.37 -2.91 -0.02 4.00 16 38 H 0.12 2.97 3.24 -2.39 -0.01 2.97 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.01 0.62 6.52 -2.39 -0.02 0.60 16 47 H 0.02 0.72 8.11 -2.39 -0.02 0.70 16 48 H 0.37 23.50 7.12 -92.71 -0.66 22.84 16 49 H 0.24 16.09 8.31 -92.71 -0.77 15.32 16 50 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.06 2.53 6.50 -2.39 -0.02 2.51 16 52 H 0.08 2.16 6.92 -2.39 -0.02 2.14 16 Total: -1.00 -87.18 394.89 4.57 -82.61 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.25 Total: 33.99 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.83 Total: 3.46 kcal Atomic # 7 Polarization: -141.69 SS G_CDS: -4.51 Total: -146.20 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.04 Total: -27.87 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.03 Total: 54.01 kcal Total: -87.18 4.57 -82.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570087685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.139 kcal (2) G-P(sol) polarization free energy of solvation -87.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds