Wall clock time and date at job start Tue Mar 31 2020 18:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47286 * 2 1 4 4 C 1.46496 * 120.00427 * 270.00165 * 3 2 1 5 5 C 1.50701 * 109.46987 * 270.00188 * 4 3 2 6 6 O 1.21281 * 120.00206 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99867 * 179.97438 * 5 4 3 8 8 C 1.46507 * 119.99926 * 0.02562 * 7 5 4 9 9 C 1.46495 * 120.00263 * 179.97438 * 7 5 4 10 10 C 1.53002 * 109.46949 * 90.00025 * 9 7 5 11 11 C 1.52997 * 109.47442 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47501 * 180.02562 * 11 10 9 13 13 C 1.46498 * 120.00310 * 270.00128 * 12 11 10 14 14 C 1.36941 * 119.99743 * 89.99573 * 12 11 10 15 15 H 1.08000 * 119.99797 * 22.35177 * 14 12 11 16 16 C 1.38811 * 120.00023 * 202.34452 * 14 12 11 17 17 N 1.31618 * 120.00047 * 11.35474 * 16 14 12 18 18 Si 1.86803 * 120.00116 * 191.34723 * 16 14 12 19 19 H 1.48494 * 109.46890 * 90.00413 * 18 16 14 20 20 H 1.48504 * 109.47125 * 210.00472 * 18 16 14 21 21 H 1.48497 * 109.46907 * 330.00049 * 18 16 14 22 22 C 1.39681 * 119.99961 * 89.99941 * 3 2 1 23 23 C 1.38919 * 120.07358 * 0.02562 * 22 3 2 24 24 C 1.38098 * 119.92601 * 179.97438 * 23 22 3 25 25 C 1.38286 * 120.07321 * 359.97438 * 24 23 22 26 26 C 1.38289 * 120.15111 * 359.97438 * 25 24 23 27 27 C 1.38101 * 120.07516 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46999 * 299.99960 * 1 2 3 29 29 H 1.08998 * 109.47073 * 59.99399 * 1 2 3 30 30 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46999 * 240.00040 * 2 1 3 32 32 H 1.09000 * 109.47206 * 120.00073 * 2 1 3 33 33 H 1.09004 * 109.46854 * 29.99741 * 4 3 2 34 34 H 1.09003 * 109.47318 * 149.99589 * 4 3 2 35 35 H 1.09000 * 109.47403 * 89.99759 * 8 7 5 36 36 H 1.09006 * 109.46519 * 210.00081 * 8 7 5 37 37 H 1.09003 * 109.46589 * 329.99396 * 8 7 5 38 38 H 1.08991 * 109.47628 * 210.00270 * 9 7 5 39 39 H 1.09005 * 109.46774 * 330.00694 * 9 7 5 40 40 H 1.09004 * 109.47401 * 300.00649 * 10 9 7 41 41 H 1.08999 * 109.46913 * 60.00265 * 10 9 7 42 42 H 1.09004 * 109.47058 * 300.00498 * 11 10 9 43 43 H 1.08999 * 109.47145 * 60.00046 * 11 10 9 44 44 H 1.09002 * 109.47002 * 94.20207 * 13 12 11 45 45 H 1.08996 * 109.47154 * 214.20725 * 13 12 11 46 46 H 1.09007 * 109.46741 * 334.20731 * 13 12 11 47 47 H 0.97000 * 120.00519 * 180.02562 * 17 16 14 48 48 H 1.08001 * 120.03766 * 359.69550 * 23 22 3 49 49 H 1.07993 * 119.96736 * 179.97438 * 24 23 22 50 50 H 1.08001 * 119.92598 * 180.02562 * 25 24 23 51 51 H 1.08005 * 119.96333 * 180.02562 * 26 25 24 52 52 H 1.07994 * 120.04265 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 8 4.4237 1.1565 -1.0210 7 7 4.1387 2.3772 -2.8515 8 6 3.2475 3.1973 -3.6759 9 6 5.5224 2.1475 -3.2742 10 6 5.5883 0.8891 -4.1421 11 6 7.0335 0.6487 -4.5831 12 7 7.0964 -0.5558 -5.4146 13 6 7.3268 -1.8628 -4.7944 14 6 6.9398 -0.4599 -6.7716 15 1 7.1290 0.4783 -7.2720 16 6 6.5381 -1.5685 -7.5040 17 7 6.0938 -2.6411 -6.8840 18 14 6.6278 -1.5381 -9.3696 19 1 7.9550 -2.0383 -9.8095 20 1 5.5610 -2.4054 -9.9307 21 1 6.4387 -0.1463 -9.8516 22 6 2.2512 2.0396 1.2097 23 6 2.0206 1.3860 2.4136 24 6 2.2523 2.0398 3.6078 25 6 2.7138 3.3433 3.6060 26 6 2.9454 3.9966 2.4093 27 6 2.7158 3.3487 1.2115 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.3235 4.2398 -3.3667 36 1 3.5360 3.1069 -4.7232 37 1 2.2201 2.8552 -3.5511 38 1 5.8738 3.0042 -3.8491 39 1 6.1537 2.0161 -2.3953 40 1 5.2369 0.0323 -3.5671 41 1 4.9570 1.0205 -5.0209 42 1 7.3852 1.5055 -5.1579 43 1 7.6645 0.5173 -3.7041 44 1 6.3695 -2.3469 -4.6007 45 1 7.9190 -2.4844 -5.4660 46 1 7.8633 -1.7297 -3.8549 47 1 5.8134 -3.4160 -7.3957 48 1 1.6563 0.3693 2.4157 49 1 2.0729 1.5325 4.5441 50 1 2.8946 3.8522 4.5413 51 1 3.3062 5.0146 2.4115 52 1 2.8964 3.8595 0.2773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570218048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:26 Heat of formation + Delta-G solvation = 29.472040 kcal Electronic energy + Delta-G solvation = -29031.494610 eV Core-core repulsion = 25225.296547 eV Total energy + Delta-G solvation = -3806.198063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.31476 -39.16152 -36.68545 -36.00359 -35.22321 -32.50880 -31.91470 -30.81339 -30.46488 -29.58181 -27.02561 -26.92794 -25.81623 -24.87753 -23.53548 -22.44460 -21.93739 -20.73809 -20.15298 -19.06619 -17.90132 -17.21369 -16.71877 -16.28018 -15.89078 -15.50172 -15.29366 -14.69337 -14.68665 -14.39370 -14.02813 -13.87477 -13.76890 -13.42693 -13.23492 -13.15213 -13.03458 -12.84347 -12.65981 -12.59258 -12.29126 -12.21431 -11.99613 -11.48120 -11.44685 -11.35244 -11.25061 -10.89234 -10.84632 -10.81924 -10.66319 -10.39627 -10.33412 -10.03285 -9.87450 -9.68652 -9.52738 -8.98321 -8.57149 -8.47845 -7.40612 -6.70581 -5.68357 -3.14082 1.37966 1.55254 2.69630 2.73429 3.24450 3.38561 3.44366 3.45729 3.85115 4.50725 4.52698 4.63767 4.67625 4.85786 4.93780 4.98621 5.06595 5.10941 5.18543 5.23531 5.27127 5.37987 5.41345 5.43552 5.45654 5.53515 5.55411 5.61930 5.65941 5.72993 5.89763 5.93571 5.98854 6.07908 6.14916 6.19173 6.28616 6.41504 6.52992 6.56687 6.69759 6.77868 6.86131 6.90334 7.07079 7.16823 7.37112 7.45107 7.49064 7.78475 7.84914 8.28986 8.44402 9.28097 9.92196 10.42005 11.36666 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.002364 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.253521 B =11842.126346 C =12158.186112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 N -0.606 5.606 4 C 0.106 3.894 5 C 0.486 3.514 6 O -0.522 6.522 7 N -0.615 5.615 8 C 0.076 3.924 9 C 0.116 3.884 10 C -0.148 4.148 11 C 0.156 3.844 12 N -0.603 5.603 13 C 0.165 3.835 14 C -0.251 4.251 15 H 0.068 0.932 16 C -0.002 4.002 17 N -0.909 5.909 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.229 3.771 23 C -0.195 4.195 24 C -0.074 4.074 25 C -0.184 4.184 26 C -0.073 4.073 27 C -0.196 4.196 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.026 0.974 45 H 0.044 0.956 46 H -0.004 1.004 47 H 0.251 0.749 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.115 0.885 51 H 0.117 0.883 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 13.359 16.649 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.002 4.002 3 N -0.315 5.315 4 C -0.021 4.021 5 C 0.271 3.729 6 O -0.397 6.397 7 N -0.350 5.350 8 C -0.068 4.068 9 C -0.007 4.007 10 C -0.189 4.189 11 C 0.028 3.972 12 N -0.326 5.326 13 C 0.020 3.980 14 C -0.380 4.380 15 H 0.086 0.914 16 C -0.199 4.199 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.127 3.873 23 C -0.217 4.217 24 C -0.093 4.093 25 C -0.204 4.204 26 C -0.091 4.091 27 C -0.219 4.219 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.062 0.938 46 H 0.015 0.985 47 H 0.062 0.938 48 H 0.139 0.861 49 H 0.136 0.864 50 H 0.133 0.867 51 H 0.135 0.865 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.202 12.708 16.776 24.328 hybrid contribution -0.102 -0.101 -1.314 1.322 sum -12.304 12.607 15.462 23.439 Atomic orbital electron populations 1.22234 0.96238 1.02115 1.02322 1.21412 0.93514 0.81883 1.03433 1.46125 1.70317 1.13355 1.01727 1.21340 0.94073 0.99468 0.87246 1.21383 0.90557 0.80124 0.80830 1.90722 1.57764 1.37722 1.53460 1.48021 1.13377 1.51244 1.22327 1.21814 0.93895 0.94465 0.96578 1.21628 0.81022 0.98783 0.99221 1.22587 1.01890 0.95842 0.98602 1.20729 0.92577 0.90408 0.93483 1.43980 1.83286 1.02026 1.03306 1.20776 0.98160 0.86481 0.92552 1.19220 1.39114 0.97334 0.82373 0.91448 1.25043 0.99407 0.97485 0.98007 1.70080 1.46670 1.05005 1.33701 0.86254 0.77276 0.77302 0.85693 1.21526 1.21808 1.20572 1.17783 0.92636 0.91232 0.85610 1.20667 1.09365 1.00585 0.91057 1.20861 0.96808 0.94520 0.97083 1.20860 1.06057 0.95825 0.97682 1.20844 0.97174 0.99118 0.92010 1.20615 1.08420 0.94329 0.98492 0.92314 0.92541 0.91600 0.90596 0.90407 0.87916 0.88026 0.92675 0.90370 0.91456 0.91044 0.90476 0.92559 0.92070 0.93995 0.94507 0.95563 0.93754 0.98531 0.93843 0.86086 0.86415 0.86730 0.86456 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.12 1.26 5.88 -4.04 -0.02 1.23 16 3 N -0.61 -6.98 2.10 -173.11 -0.36 -7.34 16 4 C 0.11 1.11 4.19 -5.20 -0.02 1.09 16 5 C 0.49 7.00 7.74 -10.98 -0.09 6.91 16 6 O -0.52 -9.90 16.01 5.56 0.09 -9.81 16 7 N -0.61 -8.15 2.87 -181.56 -0.52 -8.67 16 8 C 0.08 0.69 10.24 59.85 0.61 1.30 16 9 C 0.12 1.77 5.41 -4.04 -0.02 1.74 16 10 C -0.15 -2.86 5.86 -26.73 -0.16 -3.02 16 11 C 0.16 3.31 5.71 -4.04 -0.02 3.29 16 12 N -0.60 -15.80 2.93 -181.12 -0.53 -16.33 16 13 C 0.17 4.32 9.01 59.85 0.54 4.86 16 14 C -0.25 -7.00 9.67 -15.06 -0.15 -7.15 16 15 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 16 C 0.00 -0.04 5.13 -17.43 -0.09 -0.13 16 17 N -0.91 -27.09 10.59 55.49 0.59 -26.50 16 18 Si 0.90 22.04 29.57 -169.99 -5.03 17.01 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.23 2.77 6.55 -83.78 -0.55 2.22 16 23 C -0.19 -2.18 9.20 -39.38 -0.36 -2.55 16 24 C -0.07 -0.75 10.04 -39.61 -0.40 -1.15 16 25 C -0.18 -1.85 10.04 -39.54 -0.40 -2.25 16 26 C -0.07 -0.76 10.04 -39.61 -0.40 -1.16 16 27 C -0.20 -2.27 9.21 -39.38 -0.36 -2.63 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.08 0.81 6.20 -51.93 -0.32 0.49 16 33 H 0.10 0.88 7.33 -51.93 -0.38 0.50 16 34 H 0.10 0.85 6.16 -51.93 -0.32 0.53 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 38 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.08 1.28 7.42 -51.93 -0.39 0.89 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 43 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 44 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 45 H 0.04 1.23 7.19 -51.93 -0.37 0.85 16 46 H 0.00 -0.09 7.85 -51.93 -0.41 -0.50 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.12 1.21 6.15 -52.49 -0.32 0.88 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 50 H 0.11 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 52 H 0.12 1.22 6.14 -52.49 -0.32 0.90 16 LS Contribution 417.13 15.07 6.29 6.29 Total: -1.00 -34.64 417.13 -9.97 -44.61 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.99 Total: -0.88 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.50 Total: 1.63 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.83 Total: -58.84 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.64 -9.97 -44.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570218048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.080 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds