Wall clock time and date at job start Tue Mar 31 2020 18:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47286 * 2 1 4 4 C 1.46496 * 120.00427 * 270.00165 * 3 2 1 5 5 C 1.50701 * 109.46987 * 270.00188 * 4 3 2 6 6 O 1.21281 * 120.00206 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99867 * 179.97438 * 5 4 3 8 8 C 1.46507 * 119.99926 * 0.02562 * 7 5 4 9 9 C 1.46495 * 120.00263 * 179.97438 * 7 5 4 10 10 C 1.53002 * 109.46949 * 90.00025 * 9 7 5 11 11 C 1.52997 * 109.47442 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47501 * 180.02562 * 11 10 9 13 13 C 1.46498 * 120.00310 * 270.00128 * 12 11 10 14 14 C 1.36941 * 119.99743 * 89.99573 * 12 11 10 15 15 H 1.08000 * 119.99797 * 22.35177 * 14 12 11 16 16 C 1.38811 * 120.00023 * 202.34452 * 14 12 11 17 17 N 1.31618 * 120.00047 * 11.35474 * 16 14 12 18 18 Si 1.86803 * 120.00116 * 191.34723 * 16 14 12 19 19 H 1.48494 * 109.46890 * 90.00413 * 18 16 14 20 20 H 1.48504 * 109.47125 * 210.00472 * 18 16 14 21 21 H 1.48497 * 109.46907 * 330.00049 * 18 16 14 22 22 C 1.39681 * 119.99961 * 89.99941 * 3 2 1 23 23 C 1.38919 * 120.07358 * 0.02562 * 22 3 2 24 24 C 1.38098 * 119.92601 * 179.97438 * 23 22 3 25 25 C 1.38286 * 120.07321 * 359.97438 * 24 23 22 26 26 C 1.38289 * 120.15111 * 359.97438 * 25 24 23 27 27 C 1.38101 * 120.07516 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46999 * 299.99960 * 1 2 3 29 29 H 1.08998 * 109.47073 * 59.99399 * 1 2 3 30 30 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46999 * 240.00040 * 2 1 3 32 32 H 1.09000 * 109.47206 * 120.00073 * 2 1 3 33 33 H 1.09004 * 109.46854 * 29.99741 * 4 3 2 34 34 H 1.09003 * 109.47318 * 149.99589 * 4 3 2 35 35 H 1.09000 * 109.47403 * 89.99759 * 8 7 5 36 36 H 1.09006 * 109.46519 * 210.00081 * 8 7 5 37 37 H 1.09003 * 109.46589 * 329.99396 * 8 7 5 38 38 H 1.08991 * 109.47628 * 210.00270 * 9 7 5 39 39 H 1.09005 * 109.46774 * 330.00694 * 9 7 5 40 40 H 1.09004 * 109.47401 * 300.00649 * 10 9 7 41 41 H 1.08999 * 109.46913 * 60.00265 * 10 9 7 42 42 H 1.09004 * 109.47058 * 300.00498 * 11 10 9 43 43 H 1.08999 * 109.47145 * 60.00046 * 11 10 9 44 44 H 1.09002 * 109.47002 * 94.20207 * 13 12 11 45 45 H 1.08996 * 109.47154 * 214.20725 * 13 12 11 46 46 H 1.09007 * 109.46741 * 334.20731 * 13 12 11 47 47 H 0.97000 * 120.00519 * 180.02562 * 17 16 14 48 48 H 1.08001 * 120.03766 * 359.69550 * 23 22 3 49 49 H 1.07993 * 119.96736 * 179.97438 * 24 23 22 50 50 H 1.08001 * 119.92598 * 180.02562 * 25 24 23 51 51 H 1.08005 * 119.96333 * 180.02562 * 26 25 24 52 52 H 1.07994 * 120.04265 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 8 4.4237 1.1565 -1.0210 7 7 4.1387 2.3772 -2.8515 8 6 3.2475 3.1973 -3.6759 9 6 5.5224 2.1475 -3.2742 10 6 5.5883 0.8891 -4.1421 11 6 7.0335 0.6487 -4.5831 12 7 7.0964 -0.5558 -5.4146 13 6 7.3268 -1.8628 -4.7944 14 6 6.9398 -0.4599 -6.7716 15 1 7.1290 0.4783 -7.2720 16 6 6.5381 -1.5685 -7.5040 17 7 6.0938 -2.6411 -6.8840 18 14 6.6278 -1.5381 -9.3696 19 1 7.9550 -2.0383 -9.8095 20 1 5.5610 -2.4054 -9.9307 21 1 6.4387 -0.1463 -9.8516 22 6 2.2512 2.0396 1.2097 23 6 2.0206 1.3860 2.4136 24 6 2.2523 2.0398 3.6078 25 6 2.7138 3.3433 3.6060 26 6 2.9454 3.9966 2.4093 27 6 2.7158 3.3487 1.2115 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.3235 4.2398 -3.3667 36 1 3.5360 3.1069 -4.7232 37 1 2.2201 2.8552 -3.5511 38 1 5.8738 3.0042 -3.8491 39 1 6.1537 2.0161 -2.3953 40 1 5.2369 0.0323 -3.5671 41 1 4.9570 1.0205 -5.0209 42 1 7.3852 1.5055 -5.1579 43 1 7.6645 0.5173 -3.7041 44 1 6.3695 -2.3469 -4.6007 45 1 7.9190 -2.4844 -5.4660 46 1 7.8633 -1.7297 -3.8549 47 1 5.8134 -3.4160 -7.3957 48 1 1.6563 0.3693 2.4157 49 1 2.0729 1.5325 4.5441 50 1 2.8946 3.8522 4.5413 51 1 3.3062 5.0146 2.4115 52 1 2.8964 3.8595 0.2773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570218048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:24 Heat of formation + Delta-G solvation = 10.764137 kcal Electronic energy + Delta-G solvation = -29032.305846 eV Core-core repulsion = 25225.296547 eV Total energy + Delta-G solvation = -3807.009298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.29266 -40.09426 -38.00852 -37.29355 -36.58034 -34.14694 -32.88833 -32.12305 -31.53651 -30.60720 -28.26263 -27.87731 -27.76965 -26.24940 -24.40161 -23.82756 -22.94376 -22.03355 -21.56429 -20.08863 -18.79167 -18.71672 -18.24062 -17.34602 -16.91270 -16.67206 -16.42036 -16.16887 -15.86105 -15.49927 -15.29352 -15.15120 -14.82520 -14.75256 -14.52423 -14.35719 -14.02255 -13.93943 -13.90716 -13.37122 -13.25201 -13.23617 -13.12268 -12.93725 -12.79571 -12.68069 -12.54887 -12.47961 -12.29105 -12.21263 -12.04673 -12.01932 -11.88606 -11.61766 -11.43348 -11.29581 -10.67579 -10.54670 -9.78046 -9.66757 -8.81320 -8.23719 -7.83523 -5.32733 0.58149 0.74352 1.45330 1.47559 1.56132 1.61837 1.85887 2.30728 2.50456 3.04550 3.30653 3.58467 3.67723 3.86764 3.88626 4.07533 4.10181 4.18802 4.25054 4.32828 4.37077 4.37763 4.44087 4.52218 4.53260 4.58968 4.64311 4.66054 4.72040 4.77341 4.79599 4.81990 4.88479 4.93341 4.95194 4.99020 5.18726 5.23713 5.25473 5.30581 5.39164 5.41387 5.59152 5.61930 5.64286 5.65608 5.78260 6.01155 6.22223 6.31459 6.46024 6.57176 7.12493 7.21308 7.84418 8.30663 9.21040 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.002364 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.253521 B =11842.126346 C =12158.186112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 N -0.612 5.612 4 C 0.112 3.888 5 C 0.479 3.521 6 O -0.578 6.578 7 N -0.616 5.616 8 C 0.068 3.932 9 C 0.127 3.873 10 C -0.126 4.126 11 C 0.152 3.848 12 N -0.622 5.622 13 C 0.180 3.820 14 C -0.259 4.259 15 H 0.077 0.923 16 C -0.060 4.060 17 N -0.944 5.944 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.296 1.296 21 H -0.263 1.263 22 C 0.209 3.791 23 C -0.211 4.211 24 C -0.081 4.081 25 C -0.191 4.191 26 C -0.080 4.080 27 C -0.212 4.212 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.016 0.984 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.046 0.954 44 H -0.004 1.004 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.247 0.753 48 H 0.125 0.875 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 16.045 16.508 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.004 4.004 3 N -0.322 5.322 4 C -0.015 4.015 5 C 0.266 3.734 6 O -0.457 6.457 7 N -0.349 5.349 8 C -0.073 4.073 9 C 0.003 3.997 10 C -0.167 4.167 11 C 0.026 3.974 12 N -0.345 5.345 13 C 0.035 3.965 14 C -0.389 4.389 15 H 0.095 0.905 16 C -0.254 4.254 17 N -0.592 5.592 18 Si 0.802 3.198 19 H -0.214 1.214 20 H -0.223 1.223 21 H -0.187 1.187 22 C 0.108 3.892 23 C -0.233 4.233 24 C -0.099 4.099 25 C -0.210 4.210 26 C -0.099 4.099 27 C -0.234 4.234 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.014 0.986 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.056 0.944 48 H 0.143 0.857 49 H 0.156 0.844 50 H 0.154 0.846 51 H 0.156 0.844 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.129 15.461 16.632 26.231 hybrid contribution 0.227 -0.897 -1.191 1.508 sum -12.902 14.564 15.441 24.839 Atomic orbital electron populations 1.22120 0.94142 1.02840 1.02556 1.21425 0.95120 0.81637 1.02239 1.46250 1.70355 1.13563 1.01983 1.21474 0.91563 1.01101 0.87407 1.22200 0.91768 0.78935 0.80473 1.90692 1.59464 1.40233 1.55289 1.48132 1.13097 1.51219 1.22495 1.22128 0.94117 0.95411 0.95690 1.21366 0.82618 0.97622 0.98092 1.22257 0.99962 0.96528 0.97994 1.20917 0.93842 0.89175 0.93513 1.44256 1.83540 1.03072 1.03648 1.20488 0.96436 0.86587 0.93011 1.19605 1.38232 0.97640 0.83413 0.90491 1.25894 0.99582 0.97255 1.02696 1.70273 1.48051 1.05585 1.35243 0.85165 0.76779 0.77878 0.80024 1.21404 1.22308 1.18744 1.18043 0.93332 0.91815 0.86046 1.20883 1.09897 1.01047 0.91453 1.21182 0.96266 0.94856 0.97598 1.21198 1.05405 0.95882 0.98561 1.21167 0.96762 1.00122 0.91824 1.20820 1.08865 0.94392 0.99325 0.92251 0.91980 0.90627 0.92371 0.91088 0.85778 0.85393 0.89764 0.90675 0.89250 0.87932 0.91948 0.96529 0.93532 0.92052 0.93532 0.98565 0.96045 0.96012 0.94418 0.85680 0.84385 0.84627 0.84443 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.24 71.98 0.74 -1.69 16 2 C 0.12 2.52 5.88 86.38 0.51 3.02 16 3 N -0.61 -13.88 2.10 -701.61 -1.47 -15.35 16 4 C 0.11 2.19 4.19 85.63 0.36 2.54 16 5 C 0.48 13.62 7.74 87.66 0.68 14.30 16 6 O -0.58 -22.60 16.01 -3.03 -0.05 -22.65 16 7 N -0.62 -15.50 2.87 -846.73 -2.43 -17.93 16 8 C 0.07 1.03 10.24 127.77 1.31 2.34 16 9 C 0.13 3.73 5.41 86.38 0.47 4.20 16 10 C -0.13 -4.91 5.86 30.59 0.18 -4.73 16 11 C 0.15 6.37 5.71 86.38 0.49 6.86 16 12 N -0.62 -32.84 2.93 -726.94 -2.13 -34.97 16 13 C 0.18 9.71 9.01 127.77 1.15 10.86 16 14 C -0.26 -14.43 9.67 84.03 0.81 -13.62 16 15 H 0.08 4.06 7.84 -2.91 -0.02 4.04 16 16 C -0.06 -3.43 5.13 84.86 0.44 -2.99 16 17 N -0.94 -57.76 10.59 21.65 0.23 -57.53 16 18 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 C 0.21 4.98 6.55 38.21 0.25 5.23 16 23 C -0.21 -4.68 9.20 22.40 0.21 -4.47 16 24 C -0.08 -1.55 10.04 22.25 0.22 -1.33 16 25 C -0.19 -3.52 10.04 22.29 0.22 -3.29 16 26 C -0.08 -1.55 10.04 22.25 0.22 -1.33 16 27 C -0.21 -4.67 9.21 22.40 0.21 -4.47 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.07 1.55 6.20 -2.39 -0.01 1.54 16 33 H 0.12 1.87 7.33 -2.39 -0.02 1.85 16 34 H 0.13 1.81 6.16 -2.39 -0.01 1.80 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.22 8.07 -2.38 -0.02 1.20 16 37 H 0.09 0.97 6.44 -2.39 -0.02 0.95 16 38 H 0.10 2.40 8.07 -2.39 -0.02 2.38 16 39 H 0.06 2.05 7.42 -2.38 -0.02 2.03 16 40 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.06 2.34 8.03 -2.38 -0.02 2.32 16 43 H 0.05 1.85 7.86 -2.39 -0.02 1.83 16 44 H 0.00 -0.24 7.42 -2.39 -0.02 -0.25 16 45 H 0.02 1.21 7.19 -2.39 -0.02 1.19 16 46 H 0.02 1.03 7.85 -2.38 -0.02 1.01 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 48 H 0.13 2.53 6.15 -2.91 -0.02 2.51 16 49 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 50 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 51 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 52 H 0.12 2.38 6.14 -2.91 -0.02 2.36 16 Total: -1.00 -77.65 417.13 5.52 -72.13 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.88 Total: 17.45 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 8.46 Total: 11.44 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.80 Total: -125.78 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -77.65 5.52 -72.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570218048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.895 kcal (2) G-P(sol) polarization free energy of solvation -77.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds