Wall clock time and date at job start Tue Mar 31 2020 17:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47373 * 2 1 4 4 C 1.36448 * 124.85138 * 270.02793 * 3 2 1 5 5 C 1.50701 * 125.57199 * 359.97438 * 4 3 2 6 6 C 1.34488 * 108.85618 * 179.68696 * 4 3 2 7 7 C 1.46693 * 106.32876 * 0.43485 * 6 4 3 8 8 C 1.47265 * 126.93785 * 179.82555 * 7 6 4 9 9 O 1.21635 * 119.99638 * 152.83512 * 8 7 6 10 10 N 1.34775 * 120.00217 * 332.83981 * 8 7 6 11 11 C 1.46922 * 120.63136 * 354.19073 * 10 8 7 12 12 C 1.53190 * 108.89423 * 126.30012 * 11 10 8 13 13 C 1.53357 * 109.14754 * 54.57837 * 12 11 10 14 14 C 1.53035 * 109.60712 * 298.71334 * 13 12 11 15 15 C 1.46929 * 120.63074 * 174.17417 * 10 8 7 16 16 H 1.08996 * 109.58765 * 113.83814 * 15 10 8 17 17 C 1.53003 * 109.58682 * 353.55429 * 15 10 8 18 18 N 1.46504 * 109.47016 * 78.59195 * 17 15 10 19 19 C 1.36936 * 119.99811 * 174.36366 * 18 17 15 20 20 H 1.08000 * 120.00194 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99602 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00269 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99608 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47154 * 90.00312 * 23 21 19 25 25 H 1.48498 * 109.47074 * 209.99997 * 23 21 19 26 26 H 1.48499 * 109.47225 * 330.00183 * 23 21 19 27 27 C 1.34657 * 124.85116 * 89.99900 * 3 2 1 28 28 C 1.50703 * 125.79886 * 0.04816 * 27 3 2 29 29 H 1.08996 * 109.47596 * 59.99683 * 1 2 3 30 30 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46970 * 299.99704 * 1 2 3 32 32 H 1.09004 * 109.46970 * 240.00296 * 2 1 3 33 33 H 1.08996 * 109.47596 * 120.00316 * 2 1 3 34 34 H 1.09002 * 109.47004 * 89.99581 * 5 4 3 35 35 H 1.08998 * 109.46759 * 209.99952 * 5 4 3 36 36 H 1.08996 * 109.46740 * 330.00059 * 5 4 3 37 37 H 1.07998 * 126.83834 * 180.26985 * 6 4 3 38 38 H 1.09002 * 109.58778 * 246.16125 * 11 10 8 39 39 H 1.09001 * 109.58541 * 6.44254 * 11 10 8 40 40 H 1.09006 * 109.49911 * 174.65475 * 12 11 10 41 41 H 1.08997 * 109.50052 * 294.75722 * 12 11 10 42 42 H 1.08997 * 109.41783 * 178.67096 * 13 12 11 43 43 H 1.09003 * 109.41933 * 58.75289 * 13 12 11 44 44 H 1.09004 * 109.49588 * 301.42039 * 14 13 12 45 45 H 1.08998 * 109.52445 * 181.34191 * 14 13 12 46 46 H 1.08994 * 109.47448 * 198.59584 * 17 15 10 47 47 H 1.09006 * 109.47253 * 318.59638 * 17 15 10 48 48 H 0.96997 * 119.99870 * 354.36953 * 18 17 15 49 49 H 0.97000 * 119.99974 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.47114 * 269.99232 * 28 27 3 51 51 H 1.08998 * 109.47225 * 29.99817 * 28 27 3 52 52 H 1.09001 * 109.46853 * 149.99792 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2778 2.1165 -1.1197 5 6 2.1093 1.6405 -2.5396 6 6 2.7024 3.3376 -0.7492 7 6 2.7117 3.3434 0.7177 8 6 3.1057 4.4581 1.5958 9 8 2.6333 4.5484 2.7130 10 7 3.9896 5.3781 1.1615 11 6 4.6645 5.2151 -0.1333 12 6 4.4478 6.4809 -0.9685 13 6 4.9125 7.7005 -0.1632 14 6 4.0837 7.8160 1.1180 15 6 4.2965 6.5634 1.9738 16 1 5.3335 6.5199 2.3065 17 6 3.3690 6.6058 3.1900 18 7 3.8530 5.6680 4.2061 19 6 3.2478 5.6159 5.4334 20 1 2.4135 6.2659 5.6521 21 6 3.7067 4.7277 6.3964 22 7 4.7238 3.9360 6.1300 23 14 2.8807 4.6562 8.0703 24 1 1.7778 3.6623 8.0361 25 1 3.8762 4.2556 9.0969 26 1 2.3314 5.9937 8.4088 27 6 2.2749 2.1067 1.1050 28 6 2.1094 1.6356 2.5269 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.0997 1.8679 -2.8817 35 1 2.8324 2.1453 -3.1802 36 1 2.2740 0.5639 -2.5838 37 1 2.9834 4.1510 -1.4016 38 1 5.7316 5.0616 0.0275 39 1 4.2467 4.3555 -0.6574 40 1 5.0223 6.4102 -1.8921 41 1 3.3888 6.5837 -1.2052 42 1 4.7822 8.6015 -0.7626 43 1 5.9653 7.5849 0.0944 44 1 3.0281 7.9065 0.8616 45 1 4.3989 8.6967 1.6776 46 1 3.3570 7.6145 3.6027 47 1 2.3601 6.3250 2.8875 48 1 4.6021 5.0841 4.0096 49 1 5.0447 3.3156 6.8031 50 1 1.1004 1.8640 2.8703 51 1 2.2744 0.5592 2.5747 52 1 2.8336 2.1428 3.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570512121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:27 Heat of formation + Delta-G solvation = 61.950428 kcal Electronic energy + Delta-G solvation = -30950.069595 eV Core-core repulsion = 27145.279901 eV Total energy + Delta-G solvation = -3804.789694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40536 -39.55132 -36.61698 -34.65146 -33.85625 -32.54629 -32.27738 -31.78249 -29.67660 -29.21513 -28.88703 -26.20037 -24.64962 -23.95833 -23.83950 -22.51384 -21.66698 -20.88359 -20.22581 -19.04857 -17.71318 -16.87765 -16.37179 -15.72551 -15.46374 -15.12695 -14.72420 -14.62060 -14.29086 -14.21287 -13.61815 -13.49708 -13.34824 -13.20426 -13.13824 -13.03788 -12.87975 -12.70795 -12.47565 -12.30204 -12.10287 -12.00044 -11.91560 -11.73987 -11.51902 -11.45975 -11.39115 -11.10637 -10.84751 -10.74274 -10.62080 -10.56599 -10.26679 -10.15004 -9.72974 -9.37351 -8.62781 -8.27039 -8.16067 -7.79187 -7.66064 -6.39374 -5.42172 -2.61728 2.24904 2.56673 2.88312 3.61569 3.66140 3.67772 3.72392 4.16742 4.49489 4.69646 4.79923 4.85977 4.91951 4.98627 5.04596 5.07503 5.10139 5.20392 5.33094 5.35842 5.39911 5.41639 5.53804 5.56262 5.62860 5.69508 5.73247 5.77544 5.82452 5.86676 5.92808 6.01731 6.06443 6.07271 6.10018 6.18756 6.20737 6.25875 6.30253 6.42645 6.52161 6.66359 6.72380 6.91381 7.06481 7.14630 7.34061 7.46982 7.56357 7.99104 8.27188 8.76582 9.25935 9.87739 10.51711 10.86962 11.82209 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.004980 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.147907 B = 5621.293926 C = 8241.152067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 N -0.441 5.441 4 C 0.003 3.997 5 C -0.079 4.079 6 C -0.179 4.179 7 C -0.215 4.215 8 C 0.558 3.442 9 O -0.460 6.460 10 N -0.607 5.607 11 C 0.084 3.916 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.126 4.126 15 C 0.143 3.857 16 H 0.066 0.934 17 C 0.159 3.841 18 N -0.700 5.700 19 C -0.198 4.198 20 H 0.063 0.937 21 C -0.024 4.024 22 N -0.941 5.941 23 Si 0.897 3.103 24 H -0.295 1.295 25 H -0.296 1.296 26 H -0.286 1.286 27 C 0.100 3.900 28 C -0.087 4.087 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.149 0.851 38 H 0.054 0.946 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.010 0.990 47 H 0.044 0.956 48 H 0.379 0.621 49 H 0.247 0.753 50 H 0.075 0.925 51 H 0.054 0.946 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 -4.679 -22.429 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.119 5.119 4 C -0.104 4.104 5 C -0.137 4.137 6 C -0.203 4.203 7 C -0.225 4.225 8 C 0.345 3.655 9 O -0.331 6.331 10 N -0.344 5.344 11 C -0.039 4.039 12 C -0.172 4.172 13 C -0.155 4.155 14 C -0.165 4.165 15 C 0.040 3.960 16 H 0.084 0.916 17 C 0.031 3.969 18 N -0.343 5.343 19 C -0.331 4.331 20 H 0.081 0.919 21 C -0.218 4.218 22 N -0.592 5.592 23 Si 0.731 3.269 24 H -0.224 1.224 25 H -0.223 1.223 26 H -0.212 1.212 27 C -0.015 4.015 28 C -0.144 4.144 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.213 0.787 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.073 0.927 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.203 -4.923 -21.657 22.604 hybrid contribution -0.114 -0.338 0.713 0.798 sum -4.317 -5.261 -20.944 22.022 Atomic orbital electron populations 1.22144 0.94413 1.02733 1.03346 1.21799 0.95548 0.81159 1.04148 1.43558 1.51567 1.11651 1.05118 1.20119 1.08996 0.92895 0.88430 1.20270 1.02456 1.00896 0.90075 1.21868 1.08412 0.96478 0.93590 1.20378 1.13858 0.95352 0.92893 1.17471 0.80369 0.81511 0.86147 1.91179 1.52495 1.72396 1.17063 1.47657 1.43853 1.22990 1.19881 1.22250 0.97461 0.99175 0.84998 1.21966 1.01564 0.95593 0.98082 1.21543 0.99853 0.97570 0.96487 1.21900 1.00488 0.97969 0.96129 1.21443 0.99957 0.83383 0.91222 0.91638 1.20938 0.96481 0.92272 0.87188 1.42129 1.38019 1.43638 1.10472 1.19168 1.09771 1.14889 0.89246 0.91936 1.24551 0.99358 0.99910 0.98008 1.69664 1.28502 1.27353 1.33726 0.86290 0.78315 0.77251 0.85093 1.22358 1.22305 1.21203 1.20287 1.00991 0.91258 0.88951 1.20469 1.04623 0.99979 0.89378 0.91996 0.90928 0.91579 0.89480 0.89154 0.91456 0.90405 0.92153 0.83355 0.92753 0.87127 0.91531 0.91792 0.92329 0.92020 0.91755 0.91077 0.97233 0.93850 0.78739 0.94281 0.90643 0.92718 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.10 0.86 6.30 -4.04 -0.03 0.84 16 3 N -0.44 -5.63 2.69 -107.96 -0.29 -5.92 16 4 C 0.00 0.04 6.85 -81.86 -0.56 -0.52 16 5 C -0.08 -0.62 10.06 36.01 0.36 -0.26 16 6 C -0.18 -2.46 8.66 -37.49 -0.32 -2.78 16 7 C -0.22 -3.77 5.81 -103.35 -0.60 -4.37 16 8 C 0.56 11.40 7.26 -12.59 -0.09 11.31 16 9 O -0.46 -11.42 9.82 5.25 0.05 -11.36 16 10 N -0.61 -10.75 2.97 -166.54 -0.50 -11.25 16 11 C 0.08 1.14 5.89 -3.71 -0.02 1.12 16 12 C -0.13 -1.47 5.98 -26.45 -0.16 -1.63 16 13 C -0.12 -1.36 5.89 -26.53 -0.16 -1.51 16 14 C -0.13 -1.81 5.31 -26.61 -0.14 -1.95 16 15 C 0.14 2.65 2.90 -67.60 -0.20 2.45 16 16 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 17 C 0.16 3.65 4.94 -4.04 -0.02 3.63 16 18 N -0.70 -19.47 3.43 -59.90 -0.21 -19.67 16 19 C -0.20 -6.03 9.88 -15.06 -0.15 -6.18 16 20 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 22 N -0.94 -30.27 13.06 55.49 0.72 -29.54 16 23 Si 0.90 24.11 29.55 -169.99 -5.02 19.09 16 24 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 25 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 C 0.10 1.64 6.88 -81.89 -0.56 1.07 16 28 C -0.09 -1.49 9.40 36.01 0.34 -1.15 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.60 6.90 -51.93 -0.36 0.24 16 33 H 0.09 0.79 6.87 -51.93 -0.36 0.43 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.40 6.94 -51.93 -0.36 0.04 16 37 H 0.15 1.74 6.20 -52.49 -0.33 1.41 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.42 3.05 -51.93 -0.16 1.27 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.01 0.23 8.02 -51.93 -0.42 -0.19 16 47 H 0.04 1.09 5.92 -51.94 -0.31 0.78 16 48 H 0.38 11.26 7.56 -40.82 -0.31 10.95 16 49 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.05 0.76 6.92 -51.93 -0.36 0.40 16 52 H 0.10 2.23 7.25 -51.93 -0.38 1.85 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -36.03 396.31 -10.08 -46.11 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.79 Total: 8.36 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.02 Total: -1.77 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.27 Total: -66.39 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.05 Total: -11.36 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.03 -10.08 -46.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570512121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.064 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds