Wall clock time and date at job start Tue Mar 31 2020 17:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47373 * 2 1 4 4 C 1.36448 * 124.85138 * 270.02793 * 3 2 1 5 5 C 1.50701 * 125.57199 * 359.97438 * 4 3 2 6 6 C 1.34488 * 108.85618 * 179.68696 * 4 3 2 7 7 C 1.46693 * 106.32876 * 0.43485 * 6 4 3 8 8 C 1.47265 * 126.93785 * 179.82555 * 7 6 4 9 9 O 1.21635 * 119.99638 * 152.83512 * 8 7 6 10 10 N 1.34775 * 120.00217 * 332.83981 * 8 7 6 11 11 C 1.46922 * 120.63136 * 354.19073 * 10 8 7 12 12 C 1.53190 * 108.89423 * 126.30012 * 11 10 8 13 13 C 1.53357 * 109.14754 * 54.57837 * 12 11 10 14 14 C 1.53035 * 109.60712 * 298.71334 * 13 12 11 15 15 C 1.46929 * 120.63074 * 174.17417 * 10 8 7 16 16 H 1.08996 * 109.58765 * 113.83814 * 15 10 8 17 17 C 1.53003 * 109.58682 * 353.55429 * 15 10 8 18 18 N 1.46504 * 109.47016 * 78.59195 * 17 15 10 19 19 C 1.36936 * 119.99811 * 174.36366 * 18 17 15 20 20 H 1.08000 * 120.00194 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99602 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00269 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99608 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47154 * 90.00312 * 23 21 19 25 25 H 1.48498 * 109.47074 * 209.99997 * 23 21 19 26 26 H 1.48499 * 109.47225 * 330.00183 * 23 21 19 27 27 C 1.34657 * 124.85116 * 89.99900 * 3 2 1 28 28 C 1.50703 * 125.79886 * 0.04816 * 27 3 2 29 29 H 1.08996 * 109.47596 * 59.99683 * 1 2 3 30 30 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46970 * 299.99704 * 1 2 3 32 32 H 1.09004 * 109.46970 * 240.00296 * 2 1 3 33 33 H 1.08996 * 109.47596 * 120.00316 * 2 1 3 34 34 H 1.09002 * 109.47004 * 89.99581 * 5 4 3 35 35 H 1.08998 * 109.46759 * 209.99952 * 5 4 3 36 36 H 1.08996 * 109.46740 * 330.00059 * 5 4 3 37 37 H 1.07998 * 126.83834 * 180.26985 * 6 4 3 38 38 H 1.09002 * 109.58778 * 246.16125 * 11 10 8 39 39 H 1.09001 * 109.58541 * 6.44254 * 11 10 8 40 40 H 1.09006 * 109.49911 * 174.65475 * 12 11 10 41 41 H 1.08997 * 109.50052 * 294.75722 * 12 11 10 42 42 H 1.08997 * 109.41783 * 178.67096 * 13 12 11 43 43 H 1.09003 * 109.41933 * 58.75289 * 13 12 11 44 44 H 1.09004 * 109.49588 * 301.42039 * 14 13 12 45 45 H 1.08998 * 109.52445 * 181.34191 * 14 13 12 46 46 H 1.08994 * 109.47448 * 198.59584 * 17 15 10 47 47 H 1.09006 * 109.47253 * 318.59638 * 17 15 10 48 48 H 0.96997 * 119.99870 * 354.36953 * 18 17 15 49 49 H 0.97000 * 119.99974 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.47114 * 269.99232 * 28 27 3 51 51 H 1.08998 * 109.47225 * 29.99817 * 28 27 3 52 52 H 1.09001 * 109.46853 * 149.99792 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2778 2.1165 -1.1197 5 6 2.1093 1.6405 -2.5396 6 6 2.7024 3.3376 -0.7492 7 6 2.7117 3.3434 0.7177 8 6 3.1057 4.4581 1.5958 9 8 2.6333 4.5484 2.7130 10 7 3.9896 5.3781 1.1615 11 6 4.6645 5.2151 -0.1333 12 6 4.4478 6.4809 -0.9685 13 6 4.9125 7.7005 -0.1632 14 6 4.0837 7.8160 1.1180 15 6 4.2965 6.5634 1.9738 16 1 5.3335 6.5199 2.3065 17 6 3.3690 6.6058 3.1900 18 7 3.8530 5.6680 4.2061 19 6 3.2478 5.6159 5.4334 20 1 2.4135 6.2659 5.6521 21 6 3.7067 4.7277 6.3964 22 7 4.7238 3.9360 6.1300 23 14 2.8807 4.6562 8.0703 24 1 1.7778 3.6623 8.0361 25 1 3.8762 4.2556 9.0969 26 1 2.3314 5.9937 8.4088 27 6 2.2749 2.1067 1.1050 28 6 2.1094 1.6356 2.5269 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.0997 1.8679 -2.8817 35 1 2.8324 2.1453 -3.1802 36 1 2.2740 0.5639 -2.5838 37 1 2.9834 4.1510 -1.4016 38 1 5.7316 5.0616 0.0275 39 1 4.2467 4.3555 -0.6574 40 1 5.0223 6.4102 -1.8921 41 1 3.3888 6.5837 -1.2052 42 1 4.7822 8.6015 -0.7626 43 1 5.9653 7.5849 0.0944 44 1 3.0281 7.9065 0.8616 45 1 4.3989 8.6967 1.6776 46 1 3.3570 7.6145 3.6027 47 1 2.3601 6.3250 2.8875 48 1 4.6021 5.0841 4.0096 49 1 5.0447 3.3156 6.8031 50 1 1.1004 1.8640 2.8703 51 1 2.2744 0.5592 2.5747 52 1 2.8336 2.1428 3.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570512121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:26 Heat of formation + Delta-G solvation = 39.805563 kcal Electronic energy + Delta-G solvation = -30951.029869 eV Core-core repulsion = 27145.279901 eV Total energy + Delta-G solvation = -3805.749968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.50812 -40.95399 -38.00186 -36.40805 -35.07475 -33.69924 -33.59078 -33.40928 -31.52345 -30.19400 -29.91474 -27.79909 -26.18981 -25.16702 -24.81327 -24.25793 -22.98018 -22.20724 -21.36411 -20.27224 -19.15836 -18.74016 -17.65788 -16.95400 -16.74571 -16.61798 -16.22726 -15.79090 -15.71224 -15.40405 -15.17058 -14.94775 -14.59494 -14.51850 -14.20833 -14.11086 -14.03656 -13.84689 -13.70641 -13.64828 -13.41252 -13.27143 -13.09002 -13.06785 -12.85186 -12.77565 -12.61147 -12.45718 -12.22366 -12.11662 -12.09843 -11.97891 -11.81022 -11.67588 -11.35765 -11.24411 -10.87906 -9.80395 -9.47188 -9.20483 -8.83657 -8.64103 -7.81025 -5.01028 0.97592 1.42180 1.46280 1.51743 1.53863 1.89205 2.37774 2.62597 2.73769 3.50791 3.75711 3.80040 3.83160 3.90567 3.96283 4.03674 4.10568 4.16340 4.20546 4.34415 4.38789 4.40465 4.47779 4.52241 4.53074 4.62306 4.63762 4.70063 4.77271 4.81950 4.85504 4.89848 4.91454 5.04234 5.05134 5.06379 5.13159 5.15501 5.17804 5.18334 5.24555 5.27757 5.36136 5.40217 5.52010 5.56661 5.90426 6.00964 6.23408 6.39661 6.47835 6.85019 7.45147 7.74895 8.26772 8.51323 9.44090 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.004980 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.147907 B = 5621.293926 C = 8241.152067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.086 3.914 3 N -0.434 5.434 4 C 0.022 3.978 5 C -0.078 4.078 6 C -0.191 4.191 7 C -0.247 4.247 8 C 0.548 3.452 9 O -0.523 6.523 10 N -0.606 5.606 11 C 0.078 3.922 12 C -0.125 4.125 13 C -0.113 4.113 14 C -0.118 4.118 15 C 0.147 3.853 16 H 0.050 0.950 17 C 0.163 3.837 18 N -0.705 5.705 19 C -0.209 4.209 20 H 0.059 0.941 21 C -0.084 4.084 22 N -0.974 5.974 23 Si 0.966 3.034 24 H -0.295 1.295 25 H -0.293 1.293 26 H -0.272 1.272 27 C 0.077 3.923 28 C -0.073 4.073 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.170 0.830 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.009 0.991 47 H 0.023 0.977 48 H 0.365 0.635 49 H 0.244 0.756 50 H 0.064 0.936 51 H 0.082 0.918 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -5.238 -26.335 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.034 4.034 3 N -0.111 5.111 4 C -0.087 4.087 5 C -0.135 4.135 6 C -0.214 4.214 7 C -0.257 4.257 8 C 0.337 3.663 9 O -0.399 6.399 10 N -0.341 5.341 11 C -0.044 4.044 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.156 4.156 15 C 0.044 3.956 16 H 0.068 0.932 17 C 0.036 3.964 18 N -0.345 5.345 19 C -0.341 4.341 20 H 0.077 0.923 21 C -0.275 4.275 22 N -0.628 5.628 23 Si 0.797 3.203 24 H -0.223 1.223 25 H -0.220 1.220 26 H -0.197 1.197 27 C -0.039 4.039 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.187 0.813 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.041 0.959 48 H 0.196 0.804 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.101 0.899 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.530 -5.453 -25.633 26.596 hybrid contribution -0.050 -0.225 1.830 1.844 sum -4.580 -5.678 -23.804 24.896 Atomic orbital electron populations 1.22112 0.93590 1.04132 1.02246 1.22173 0.96200 0.79203 1.05843 1.43802 1.50354 1.12778 1.04164 1.20867 1.05831 0.91993 0.90010 1.20451 1.03914 1.02290 0.86816 1.22028 1.09705 0.98210 0.91448 1.20391 1.15593 0.94877 0.94859 1.18105 0.79979 0.82273 0.85921 1.91129 1.55038 1.74017 1.19743 1.47790 1.43206 1.22003 1.21135 1.22561 0.96952 1.01502 0.83357 1.21943 1.02319 0.93364 0.98629 1.21549 0.99176 0.99216 0.95070 1.21847 1.01117 0.95565 0.97105 1.21307 0.97559 0.86112 0.90659 0.93185 1.20943 0.96590 0.90663 0.88167 1.42211 1.37425 1.44077 1.10811 1.19486 1.09498 1.14673 0.90485 0.92301 1.25345 1.00367 0.99869 1.01871 1.69842 1.30037 1.28145 1.34756 0.85214 0.77148 0.77605 0.80372 1.22273 1.21953 1.19749 1.20090 1.02449 0.91978 0.89420 1.20167 1.02162 1.00991 0.89732 0.91619 0.88280 0.94113 0.86145 0.89148 0.90020 0.88524 0.90207 0.81269 0.92784 0.86096 0.87903 0.91656 0.89486 0.91832 0.92028 0.90345 0.97298 0.95923 0.80414 0.94721 0.91724 0.89923 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 71.98 0.74 -1.55 16 2 C 0.09 1.33 6.30 86.38 0.54 1.88 16 3 N -0.43 -10.47 2.69 -495.49 -1.33 -11.80 16 4 C 0.02 0.46 6.85 40.98 0.28 0.74 16 5 C -0.08 -0.83 10.06 71.24 0.72 -0.11 16 6 C -0.19 -4.94 8.66 23.62 0.20 -4.73 16 7 C -0.25 -8.99 5.81 -19.04 -0.11 -9.10 16 8 C 0.55 23.98 7.26 86.62 0.63 24.61 16 9 O -0.52 -28.42 9.82 -4.14 -0.04 -28.46 16 10 N -0.61 -22.28 2.97 -799.04 -2.38 -24.66 16 11 C 0.08 2.02 5.89 86.36 0.51 2.53 16 12 C -0.12 -2.34 5.98 30.78 0.18 -2.16 16 13 C -0.11 -2.30 5.89 30.73 0.18 -2.12 16 14 C -0.12 -3.30 5.31 30.67 0.16 -3.14 16 15 C 0.15 5.68 2.90 44.98 0.13 5.81 16 16 H 0.05 2.07 8.12 -2.39 -0.02 2.05 16 17 C 0.16 8.01 4.94 86.38 0.43 8.44 16 18 N -0.71 -42.01 3.43 -343.44 -1.18 -43.19 16 19 C -0.21 -13.39 9.88 84.03 0.83 -12.56 16 20 H 0.06 3.73 7.83 -2.91 -0.02 3.70 16 21 C -0.08 -5.39 5.50 84.86 0.47 -4.93 16 22 N -0.97 -65.84 13.06 21.65 0.28 -65.55 16 23 Si 0.97 51.55 29.55 68.60 2.03 53.58 16 24 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 25 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 26 H -0.27 -13.78 7.11 99.48 0.71 -13.08 16 27 C 0.08 2.62 6.88 41.78 0.29 2.91 16 28 C -0.07 -2.72 9.40 71.24 0.67 -2.05 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.12 1.12 6.90 -2.38 -0.02 1.10 16 33 H 0.09 1.42 6.87 -2.39 -0.02 1.40 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.60 6.94 -2.39 -0.02 0.58 16 37 H 0.17 3.49 6.20 -2.91 -0.02 3.47 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.12 2.92 3.05 -2.39 -0.01 2.91 16 40 H 0.10 1.28 8.14 -2.38 -0.02 1.27 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.01 0.45 8.02 -2.39 -0.02 0.43 16 47 H 0.02 1.24 5.92 -2.65 -0.02 1.23 16 48 H 0.36 23.37 7.56 -92.71 -0.70 22.67 16 49 H 0.24 15.92 8.31 -92.71 -0.77 15.15 16 50 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 51 H 0.08 2.44 6.92 -2.39 -0.02 2.43 16 52 H 0.05 2.32 7.25 -2.39 -0.02 2.31 16 Total: -1.00 -86.56 396.31 4.44 -82.12 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.21 Total: 33.49 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.85 Total: 4.48 kcal Atomic # 7 Polarization: -140.61 SS G_CDS: -4.60 Total: -145.21 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.04 Total: -28.46 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.03 Total: 53.58 kcal Total: -86.56 4.44 -82.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570512121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.928 kcal (2) G-P(sol) polarization free energy of solvation -86.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds