Wall clock time and date at job start Tue Mar 31 2020 18:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47377 * 2 1 4 4 C 1.36936 * 119.99457 * 274.16070 * 3 2 1 5 5 H 1.08007 * 120.00599 * 39.36584 * 4 3 2 6 6 C 1.38818 * 119.99850 * 219.36630 * 4 3 2 7 7 N 1.31618 * 120.00081 * 19.77974 * 6 4 3 8 8 Si 1.86796 * 119.99903 * 199.78213 * 6 4 3 9 9 H 1.48501 * 109.47310 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47038 * 119.99989 * 8 6 4 11 11 H 1.48500 * 109.47016 * 239.99766 * 8 6 4 12 12 C 1.46489 * 120.00427 * 94.15648 * 3 2 1 13 13 C 1.53004 * 109.47446 * 270.00167 * 12 3 2 14 14 C 1.53000 * 109.47003 * 179.97438 * 13 12 3 15 15 N 1.46506 * 109.46747 * 180.02562 * 14 13 12 16 16 C 1.34771 * 120.00051 * 180.02562 * 15 14 13 17 17 O 1.21288 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00433 * 180.02562 * 16 15 14 19 19 H 1.09005 * 109.46928 * 326.84675 * 18 16 15 20 20 C 1.50699 * 109.47118 * 86.84071 * 18 16 15 21 21 C 1.38236 * 120.00164 * 73.27107 * 20 18 16 22 22 C 1.38232 * 120.00356 * 179.81103 * 21 20 18 23 23 C 1.38240 * 119.99399 * 0.39450 * 22 21 20 24 24 C 1.38229 * 120.00205 * 359.85597 * 23 22 21 25 25 C 1.38234 * 120.00307 * 359.95930 * 24 23 22 26 26 N 1.46900 * 109.47409 * 206.84465 * 18 16 15 27 27 C 1.46894 * 110.99991 * 60.65231 * 26 18 16 28 28 C 1.46900 * 110.99726 * 184.60572 * 26 18 16 29 29 H 1.09006 * 109.47068 * 300.00243 * 1 2 3 30 30 H 1.08999 * 109.47133 * 59.99932 * 1 2 3 31 31 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47165 * 239.99378 * 2 1 3 33 33 H 1.09001 * 109.47091 * 119.99529 * 2 1 3 34 34 H 0.96998 * 120.00448 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47469 * 149.99916 * 12 3 2 36 36 H 1.09004 * 109.47256 * 30.00545 * 12 3 2 37 37 H 1.09000 * 109.46575 * 60.00102 * 13 12 3 38 38 H 1.08999 * 109.46849 * 300.00124 * 13 12 3 39 39 H 1.09000 * 109.47074 * 60.00771 * 14 13 12 40 40 H 1.08999 * 109.47716 * 299.99957 * 14 13 12 41 41 H 0.97004 * 120.00030 * 0.02562 * 15 14 13 42 42 H 1.08008 * 119.99712 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.00278 * 180.22716 * 22 21 20 44 44 H 1.08003 * 119.99584 * 179.83960 * 23 22 21 45 45 H 1.08006 * 119.99532 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.00015 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47037 * 183.95101 * 27 26 18 48 48 H 1.09004 * 109.47287 * 63.95660 * 27 26 18 49 49 H 1.09001 * 109.47418 * 303.95678 * 27 26 18 50 50 H 1.08996 * 109.47401 * 298.64619 * 28 26 18 51 51 H 1.09000 * 109.47263 * 58.64969 * 28 26 18 52 52 H 1.09002 * 109.46979 * 178.64179 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1655 2.0553 -1.1828 5 1 1.4321 1.9367 -1.9669 6 6 3.2572 2.8911 -1.3743 7 7 4.3301 2.7545 -0.6242 8 14 3.2035 4.2097 -2.6963 9 1 1.8948 4.1559 -3.3962 10 1 3.3762 5.5453 -2.0706 11 1 4.2969 3.9757 -3.6735 12 6 2.3493 2.0412 1.2652 13 6 1.1081 2.7506 1.8104 14 6 1.4536 3.4393 3.1322 15 7 0.2649 4.1181 3.6544 16 6 0.3326 4.7968 4.8168 17 8 1.3775 4.8454 5.4307 18 6 -0.8901 5.4946 5.3543 19 1 -1.4954 5.8582 4.5240 20 6 -1.6988 4.5268 6.1792 21 6 -1.2518 4.1427 7.4297 22 6 -1.9955 3.2580 8.1880 23 6 -3.1822 2.7510 7.6924 24 6 -3.6266 3.1310 6.4398 25 6 -2.8848 4.0187 5.6831 26 7 -0.4782 6.6279 6.1932 27 6 0.3008 7.6017 5.4169 28 6 -1.6414 7.2666 6.8233 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.0928 3.3387 -0.7577 35 1 3.1410 2.7714 1.0980 36 1 2.6881 1.2967 1.9857 37 1 0.3164 2.0203 1.9777 38 1 0.7693 3.4951 1.0899 39 1 2.2454 4.1696 2.9652 40 1 1.7921 2.6946 3.8525 41 1 -0.5708 4.0790 3.1636 42 1 -0.3227 4.5360 7.8153 43 1 -1.6480 2.9608 9.1664 44 1 -3.7620 2.0578 8.2838 45 1 -4.5536 2.7345 6.0526 46 1 -3.2323 4.3159 4.7047 47 1 0.6524 8.3947 6.0770 48 1 -0.3278 8.0306 4.6366 49 1 1.1559 7.1025 4.9612 50 1 -2.3066 7.6527 6.0510 51 1 -2.1745 6.5338 7.4290 52 1 -1.3061 8.0872 7.4576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660632736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:34 Heat of formation + Delta-G solvation = 14.215028 kcal Electronic energy + Delta-G solvation = -29176.720672 eV Core-core repulsion = 25369.861015 eV Total energy + Delta-G solvation = -3806.859657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.53123 -38.83529 -36.99150 -36.30111 -34.68853 -32.26150 -31.85621 -31.10591 -31.03969 -28.71056 -27.94253 -27.30056 -25.18534 -23.68113 -23.01080 -22.55488 -21.71906 -21.00409 -20.28341 -19.68378 -17.33932 -17.01143 -16.74239 -16.23429 -15.87335 -15.26235 -15.15546 -14.80782 -14.56845 -14.47900 -14.38346 -13.94846 -13.64191 -13.53518 -13.37760 -13.08982 -12.85722 -12.60863 -12.52190 -12.43608 -12.35472 -12.11460 -11.76519 -11.57788 -11.40997 -11.22308 -11.20449 -11.11413 -11.00247 -10.77728 -10.56241 -10.44679 -10.06882 -9.84225 -9.63978 -9.51935 -9.09167 -8.86062 -8.79254 -8.56968 -8.48090 -6.53680 -5.77998 -3.40265 1.07104 1.23729 2.73288 3.12741 3.33507 3.42503 3.44428 3.52404 3.95069 4.44930 4.46732 4.64982 4.81177 4.83868 4.90533 4.95725 5.06737 5.14629 5.26575 5.28933 5.38821 5.40627 5.41360 5.45211 5.66847 5.67282 5.73086 5.85028 5.86330 5.89053 5.99600 6.09993 6.23973 6.29852 6.34579 6.35281 6.36590 6.43752 6.49386 6.59384 6.67119 6.75774 6.77669 6.81215 6.81318 6.92269 7.10215 7.18399 7.67379 7.68748 7.82691 8.37663 8.54099 9.20586 9.81827 10.42079 11.21049 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.002879 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.429135 B = 9722.572331 C =11051.776038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.153 3.847 13 C -0.146 4.146 14 C 0.123 3.877 15 N -0.724 5.724 16 C 0.517 3.483 17 O -0.520 6.520 18 C 0.109 3.891 19 H 0.065 0.935 20 C -0.082 4.082 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.110 4.110 26 N -0.519 5.519 27 C 0.020 3.980 28 C 0.024 3.976 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.254 0.746 35 H 0.093 0.907 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.397 0.603 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.073 0.927 48 H 0.025 0.975 49 H 0.078 0.922 50 H 0.025 0.975 51 H 0.072 0.928 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 5.039 15.858 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.026 3.974 13 C -0.187 4.187 14 C -0.001 4.001 15 N -0.375 5.375 16 C 0.301 3.699 17 O -0.395 6.395 18 C -0.003 4.003 19 H 0.083 0.917 20 C -0.083 4.083 21 C -0.100 4.100 22 C -0.143 4.143 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.129 4.129 26 N -0.244 5.244 27 C -0.128 4.128 28 C -0.124 4.124 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.230 0.770 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.092 0.908 48 H 0.043 0.957 49 H 0.097 0.903 50 H 0.044 0.956 51 H 0.091 0.909 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.794 4.962 16.643 22.814 hybrid contribution -1.028 1.048 -1.612 2.181 sum -15.821 6.010 15.031 22.636 Atomic orbital electron populations 1.22375 1.00229 0.98876 1.01054 1.20848 0.91599 0.87446 0.98719 1.43725 1.76308 1.08175 1.02281 1.19006 1.03487 1.22672 0.93885 0.92419 1.25250 0.94310 1.01217 0.97873 1.69994 1.03280 1.38130 1.41401 0.86367 0.77643 0.82031 0.81565 1.20105 1.21432 1.21591 1.20764 0.94328 0.96482 0.85853 1.22543 1.02460 0.99807 0.93862 1.21476 0.86668 0.96017 0.95921 1.46182 1.14758 1.53403 1.23193 1.20130 0.89362 0.79438 0.80943 1.90705 1.30590 1.60276 1.57882 1.20511 0.93697 0.91696 0.94417 0.91736 1.19351 0.94996 0.98455 0.95455 1.21151 0.99722 0.95660 0.93425 1.21210 0.95217 0.97708 1.00158 1.21203 0.96557 0.99644 0.96029 1.21073 1.00028 0.98144 0.94833 1.21033 0.94341 0.97706 0.99810 1.61714 1.22070 1.08312 1.32256 1.22487 0.98232 0.95335 0.96709 1.22442 0.91718 0.99389 0.98811 0.93819 0.93312 0.94649 0.93831 0.94913 0.93552 0.88917 0.95686 0.93044 0.91785 0.91531 0.92017 0.76999 0.84809 0.85948 0.86137 0.85938 0.86056 0.90795 0.95684 0.90321 0.95621 0.90887 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.22 37.16 0.38 -2.58 16 2 C 0.14 2.95 6.43 -4.04 -0.03 2.92 16 3 N -0.58 -14.22 2.42 -173.24 -0.42 -14.63 16 4 C -0.26 -6.97 9.45 -15.06 -0.14 -7.11 16 5 H 0.06 1.55 7.90 -52.48 -0.41 1.14 16 6 C 0.01 0.38 4.98 -17.43 -0.09 0.30 16 7 N -0.89 -25.24 11.50 55.49 0.64 -24.60 16 8 Si 0.89 21.24 29.60 -169.99 -5.03 16.21 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.15 3.46 5.33 -4.05 -0.02 3.44 16 13 C -0.15 -2.70 5.65 -26.73 -0.15 -2.85 16 14 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 15 N -0.72 -10.35 5.56 -60.29 -0.33 -10.68 16 16 C 0.52 7.72 5.87 -10.99 -0.06 7.65 16 17 O -0.52 -9.63 15.57 5.55 0.09 -9.55 16 18 C 0.11 1.28 2.07 -70.02 -0.14 1.13 16 19 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 20 C -0.08 -0.90 3.53 -104.62 -0.37 -1.27 16 21 C -0.08 -0.93 8.40 -39.58 -0.33 -1.26 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -1.08 10.05 -39.59 -0.40 -1.47 16 25 C -0.11 -1.05 9.67 -39.58 -0.38 -1.43 16 26 N -0.52 -6.01 4.14 -246.00 -1.02 -7.03 16 27 C 0.02 0.23 9.28 60.06 0.56 0.78 16 28 C 0.02 0.22 9.19 60.06 0.55 0.77 16 29 H 0.04 0.75 6.55 -51.93 -0.34 0.41 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.03 0.65 7.84 -51.93 -0.41 0.24 16 34 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.09 2.40 5.59 -51.93 -0.29 2.11 16 36 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 37 H 0.05 0.90 6.55 -51.93 -0.34 0.56 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.40 4.73 8.47 -40.82 -0.35 4.38 16 42 H 0.13 1.70 7.93 -52.48 -0.42 1.28 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 46 H 0.12 0.94 7.99 -52.49 -0.42 0.52 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.08 1.08 6.32 -51.93 -0.33 0.75 16 50 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 51 H 0.07 0.67 6.32 -51.93 -0.33 0.34 16 52 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 417.11 15.07 6.29 6.29 Total: -1.00 -31.05 417.11 -10.32 -41.37 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -9.08 Total: 4.59 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -1.13 Total: -56.94 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.05 -10.32 -41.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660632736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.584 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds