Wall clock time and date at job start Tue Mar 31 2020 18:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47377 * 2 1 4 4 C 1.36936 * 119.99457 * 274.16070 * 3 2 1 5 5 H 1.08007 * 120.00599 * 39.36584 * 4 3 2 6 6 C 1.38818 * 119.99850 * 219.36630 * 4 3 2 7 7 N 1.31618 * 120.00081 * 19.77974 * 6 4 3 8 8 Si 1.86796 * 119.99903 * 199.78213 * 6 4 3 9 9 H 1.48501 * 109.47310 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47038 * 119.99989 * 8 6 4 11 11 H 1.48500 * 109.47016 * 239.99766 * 8 6 4 12 12 C 1.46489 * 120.00427 * 94.15648 * 3 2 1 13 13 C 1.53004 * 109.47446 * 270.00167 * 12 3 2 14 14 C 1.53000 * 109.47003 * 179.97438 * 13 12 3 15 15 N 1.46506 * 109.46747 * 180.02562 * 14 13 12 16 16 C 1.34771 * 120.00051 * 180.02562 * 15 14 13 17 17 O 1.21288 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00433 * 180.02562 * 16 15 14 19 19 H 1.09005 * 109.46928 * 326.84675 * 18 16 15 20 20 C 1.50699 * 109.47118 * 86.84071 * 18 16 15 21 21 C 1.38236 * 120.00164 * 73.27107 * 20 18 16 22 22 C 1.38232 * 120.00356 * 179.81103 * 21 20 18 23 23 C 1.38240 * 119.99399 * 0.39450 * 22 21 20 24 24 C 1.38229 * 120.00205 * 359.85597 * 23 22 21 25 25 C 1.38234 * 120.00307 * 359.95930 * 24 23 22 26 26 N 1.46900 * 109.47409 * 206.84465 * 18 16 15 27 27 C 1.46894 * 110.99991 * 60.65231 * 26 18 16 28 28 C 1.46900 * 110.99726 * 184.60572 * 26 18 16 29 29 H 1.09006 * 109.47068 * 300.00243 * 1 2 3 30 30 H 1.08999 * 109.47133 * 59.99932 * 1 2 3 31 31 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47165 * 239.99378 * 2 1 3 33 33 H 1.09001 * 109.47091 * 119.99529 * 2 1 3 34 34 H 0.96998 * 120.00448 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47469 * 149.99916 * 12 3 2 36 36 H 1.09004 * 109.47256 * 30.00545 * 12 3 2 37 37 H 1.09000 * 109.46575 * 60.00102 * 13 12 3 38 38 H 1.08999 * 109.46849 * 300.00124 * 13 12 3 39 39 H 1.09000 * 109.47074 * 60.00771 * 14 13 12 40 40 H 1.08999 * 109.47716 * 299.99957 * 14 13 12 41 41 H 0.97004 * 120.00030 * 0.02562 * 15 14 13 42 42 H 1.08008 * 119.99712 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.00278 * 180.22716 * 22 21 20 44 44 H 1.08003 * 119.99584 * 179.83960 * 23 22 21 45 45 H 1.08006 * 119.99532 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.00015 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47037 * 183.95101 * 27 26 18 48 48 H 1.09004 * 109.47287 * 63.95660 * 27 26 18 49 49 H 1.09001 * 109.47418 * 303.95678 * 27 26 18 50 50 H 1.08996 * 109.47401 * 298.64619 * 28 26 18 51 51 H 1.09000 * 109.47263 * 58.64969 * 28 26 18 52 52 H 1.09002 * 109.46979 * 178.64179 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1655 2.0553 -1.1828 5 1 1.4321 1.9367 -1.9669 6 6 3.2572 2.8911 -1.3743 7 7 4.3301 2.7545 -0.6242 8 14 3.2035 4.2097 -2.6963 9 1 1.8948 4.1559 -3.3962 10 1 3.3762 5.5453 -2.0706 11 1 4.2969 3.9757 -3.6735 12 6 2.3493 2.0412 1.2652 13 6 1.1081 2.7506 1.8104 14 6 1.4536 3.4393 3.1322 15 7 0.2649 4.1181 3.6544 16 6 0.3326 4.7968 4.8168 17 8 1.3775 4.8454 5.4307 18 6 -0.8901 5.4946 5.3543 19 1 -1.4954 5.8582 4.5240 20 6 -1.6988 4.5268 6.1792 21 6 -1.2518 4.1427 7.4297 22 6 -1.9955 3.2580 8.1880 23 6 -3.1822 2.7510 7.6924 24 6 -3.6266 3.1310 6.4398 25 6 -2.8848 4.0187 5.6831 26 7 -0.4782 6.6279 6.1932 27 6 0.3008 7.6017 5.4169 28 6 -1.6414 7.2666 6.8233 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.0928 3.3387 -0.7577 35 1 3.1410 2.7714 1.0980 36 1 2.6881 1.2967 1.9857 37 1 0.3164 2.0203 1.9777 38 1 0.7693 3.4951 1.0899 39 1 2.2454 4.1696 2.9652 40 1 1.7921 2.6946 3.8525 41 1 -0.5708 4.0790 3.1636 42 1 -0.3227 4.5360 7.8153 43 1 -1.6480 2.9608 9.1664 44 1 -3.7620 2.0578 8.2838 45 1 -4.5536 2.7345 6.0526 46 1 -3.2323 4.3159 4.7047 47 1 0.6524 8.3947 6.0770 48 1 -0.3278 8.0306 4.6366 49 1 1.1559 7.1025 4.9612 50 1 -2.3066 7.6527 6.0510 51 1 -2.1745 6.5338 7.4290 52 1 -1.3061 8.0872 7.4576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660632736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:33 Heat of formation + Delta-G solvation = -4.127952 kcal Electronic energy + Delta-G solvation = -29177.516083 eV Core-core repulsion = 25369.861015 eV Total energy + Delta-G solvation = -3807.655068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52428 -39.77998 -38.27012 -37.68025 -36.11964 -33.82172 -33.24497 -32.38398 -31.77048 -30.30900 -28.93325 -28.18560 -26.89366 -25.28614 -23.83272 -23.31397 -22.82329 -22.42676 -21.99119 -20.86357 -18.62861 -18.32333 -17.88247 -17.35220 -17.01204 -16.71454 -16.29265 -16.20556 -15.72497 -15.62016 -15.33802 -15.28905 -15.07936 -14.79005 -14.27596 -14.21285 -14.09094 -14.02165 -13.69510 -13.39970 -13.23684 -13.20169 -13.15625 -12.91104 -12.77003 -12.73385 -12.61277 -12.52406 -12.30754 -12.12950 -11.96225 -11.92631 -11.90603 -11.46136 -11.24138 -10.99520 -10.51193 -10.11913 -9.80724 -9.64431 -9.39355 -8.52315 -7.80059 -5.47691 0.33437 0.51805 1.43918 1.47562 1.57124 1.58041 2.02242 2.50658 2.76043 3.07497 3.25485 3.60666 3.66771 3.79529 3.87904 4.12910 4.14763 4.19715 4.26379 4.31420 4.33587 4.38043 4.44974 4.54042 4.58875 4.63828 4.64981 4.72869 4.73199 4.77343 4.89011 4.94328 4.99258 5.00264 5.03854 5.04638 5.16463 5.18193 5.33946 5.41576 5.45496 5.54899 5.59222 5.60833 5.64020 5.69932 5.83541 5.85396 5.98760 6.10269 6.49520 6.54683 7.19461 7.22006 7.88341 8.42273 9.14247 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.002879 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.429135 B = 9722.572331 C =11051.776038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.263 4.263 5 H 0.055 0.945 6 C -0.035 4.035 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.154 3.846 13 C -0.121 4.121 14 C 0.137 3.863 15 N -0.715 5.715 16 C 0.516 3.484 17 O -0.562 6.562 18 C 0.117 3.883 19 H 0.085 0.915 20 C -0.093 4.093 21 C -0.100 4.100 22 C -0.133 4.133 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.113 4.113 26 N -0.538 5.538 27 C 0.024 3.976 28 C 0.029 3.971 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.411 0.589 42 H 0.110 0.890 43 H 0.134 0.866 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.047 0.953 50 H 0.038 0.962 51 H 0.071 0.929 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.513 4.893 16.035 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.394 4.394 5 H 0.073 0.927 6 C -0.233 4.233 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.027 3.973 13 C -0.161 4.161 14 C 0.012 3.988 15 N -0.367 5.367 16 C 0.302 3.698 17 O -0.440 6.440 18 C 0.006 3.994 19 H 0.103 0.897 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.151 4.151 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.131 4.131 26 N -0.263 5.263 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.163 0.837 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.056 0.944 51 H 0.089 0.911 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.281 4.805 16.815 25.299 hybrid contribution 0.035 0.998 -1.604 1.889 sum -18.247 5.803 15.211 24.454 Atomic orbital electron populations 1.22168 0.97179 1.00788 1.00839 1.20998 0.93885 0.85734 0.98533 1.43969 1.76747 1.09549 1.02046 1.19205 1.02983 1.22654 0.94560 0.92735 1.25924 0.94088 1.03221 1.00033 1.70128 1.03865 1.39030 1.43238 0.85420 0.77780 0.79337 0.79182 1.18905 1.21695 1.21921 1.20649 0.95214 0.95873 0.85601 1.22164 1.00688 0.99475 0.93822 1.21100 0.87219 0.95318 0.95159 1.45995 1.14461 1.52971 1.23275 1.20787 0.89951 0.78756 0.80320 1.90682 1.32547 1.61723 1.59040 1.20439 0.92007 0.91763 0.95205 0.89710 1.19339 0.95793 0.98988 0.95312 1.21075 0.99482 0.96979 0.94339 1.21404 0.95623 0.97386 1.00647 1.21534 0.96084 0.99453 0.96377 1.21434 1.00676 0.97418 0.94608 1.21286 0.93636 0.97446 1.00733 1.61670 1.23483 1.08613 1.32552 1.22419 0.97471 0.95252 0.97285 1.22437 0.90940 0.99416 0.99011 0.93042 0.94410 0.91666 0.95195 0.93985 0.94035 0.92456 0.95655 0.91192 0.92768 0.93812 0.92626 0.75252 0.87183 0.84778 0.83747 0.83438 0.84052 0.89678 0.94247 0.93433 0.94392 0.91075 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 10.22 71.98 0.74 -4.25 16 2 C 0.13 5.50 6.43 86.38 0.56 6.05 16 3 N -0.60 -29.26 2.42 -702.02 -1.70 -30.96 16 4 C -0.26 -14.14 9.45 84.04 0.79 -13.35 16 5 H 0.06 2.92 7.90 -2.91 -0.02 2.90 16 6 C -0.04 -1.93 4.98 84.86 0.42 -1.51 16 7 N -0.92 -53.76 11.50 21.65 0.25 -53.51 16 8 Si 0.95 44.12 29.60 68.60 2.03 46.15 16 9 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 C 0.15 7.04 5.33 86.38 0.46 7.50 16 13 C -0.12 -4.41 5.65 30.60 0.17 -4.24 16 14 C 0.14 4.68 5.67 86.38 0.49 5.17 16 15 N -0.71 -20.00 5.56 -463.05 -2.57 -22.57 16 16 C 0.52 15.44 5.87 87.66 0.51 15.96 16 17 O -0.56 -21.68 15.57 -3.06 -0.05 -21.73 16 18 C 0.12 2.64 2.07 43.42 0.09 2.73 16 19 H 0.09 1.53 7.94 -2.38 -0.02 1.51 16 20 C -0.09 -1.93 3.53 -19.87 -0.07 -2.00 16 21 C -0.10 -2.26 8.40 22.27 0.19 -2.07 16 22 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 23 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 24 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 25 C -0.11 -1.82 9.67 22.27 0.22 -1.60 16 26 N -0.54 -12.18 4.14 -932.22 -3.86 -16.04 16 27 C 0.02 0.52 9.28 127.69 1.19 1.71 16 28 C 0.03 0.48 9.19 127.69 1.17 1.66 16 29 H 0.05 1.61 6.55 -2.38 -0.02 1.60 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.04 1.62 7.84 -2.39 -0.02 1.61 16 34 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.06 3.09 5.59 -2.39 -0.01 3.07 16 36 H 0.03 1.12 7.86 -2.38 -0.02 1.11 16 37 H 0.07 2.30 6.55 -2.39 -0.02 2.28 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.41 9.04 8.47 -92.71 -0.79 8.25 16 42 H 0.11 2.94 7.93 -2.91 -0.02 2.92 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 46 H 0.14 1.65 7.99 -2.91 -0.02 1.63 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.05 1.35 6.32 -2.39 -0.02 1.34 16 50 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.07 1.21 6.32 -2.39 -0.02 1.19 16 52 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.88 417.11 1.80 -67.08 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.10 Total: 25.01 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 7.60 Total: 6.56 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -7.88 Total: -123.08 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.88 1.80 -67.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660632736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.955 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds