Wall clock time and date at job start Tue Mar 31 2020 17:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47485 * 2 1 4 4 C 1.36447 * 124.84975 * 89.97513 * 3 2 1 5 5 C 1.50705 * 125.57404 * 0.04425 * 4 3 2 6 6 C 1.34485 * 108.85784 * 180.02562 * 4 3 2 7 7 C 1.46690 * 106.33298 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94375 * 180.02562 * 7 6 4 9 9 O 1.21625 * 120.00043 * 141.24475 * 8 7 6 10 10 N 1.34774 * 120.00132 * 321.23976 * 8 7 6 11 11 C 1.46933 * 120.62935 * 354.65539 * 10 8 7 12 12 C 1.53193 * 108.77256 * 233.58252 * 11 10 8 13 13 C 1.53037 * 109.31534 * 305.36663 * 12 11 10 14 14 C 1.53033 * 109.53911 * 61.36690 * 13 12 11 15 15 H 1.09000 * 109.52712 * 58.60355 * 14 13 12 16 16 C 1.53002 * 109.49776 * 178.68520 * 14 13 12 17 17 N 1.46503 * 109.46752 * 184.83900 * 16 14 13 18 18 C 1.36940 * 119.99412 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00515 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99835 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99772 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00144 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47223 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47089 * 299.99571 * 22 20 18 25 25 H 1.48496 * 109.47240 * 59.99777 * 22 20 18 26 26 C 1.46926 * 120.63392 * 174.63268 * 10 8 7 27 27 C 1.34655 * 124.85553 * 270.30999 * 3 2 1 28 28 C 1.50703 * 125.79524 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.46366 * 59.99363 * 1 2 3 30 30 H 1.08996 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46862 * 300.00314 * 1 2 3 32 32 H 1.09001 * 109.46862 * 239.99686 * 2 1 3 33 33 H 1.09008 * 109.46653 * 120.00403 * 2 1 3 34 34 H 1.09006 * 109.46713 * 269.99888 * 5 4 3 35 35 H 1.08993 * 109.47215 * 29.99772 * 5 4 3 36 36 H 1.08998 * 109.47334 * 150.00186 * 5 4 3 37 37 H 1.08008 * 126.83930 * 180.02562 * 6 4 3 38 38 H 1.09000 * 109.58762 * 353.37366 * 11 10 8 39 39 H 1.09005 * 109.58397 * 113.65845 * 11 10 8 40 40 H 1.08998 * 109.49524 * 65.32406 * 12 11 10 41 41 H 1.09001 * 109.49735 * 185.38026 * 12 11 10 42 42 H 1.09003 * 109.45955 * 301.34442 * 13 12 11 43 43 H 1.09001 * 109.46099 * 181.38920 * 13 12 11 44 44 H 1.08992 * 109.47302 * 64.84031 * 16 14 13 45 45 H 1.09000 * 109.47015 * 304.83090 * 16 14 13 46 46 H 0.96992 * 120.00579 * 359.97438 * 17 16 14 47 47 H 0.97000 * 120.00685 * 0.02562 * 21 20 18 48 48 H 1.09003 * 109.58441 * 6.62350 * 26 10 8 49 49 H 1.09004 * 109.58412 * 246.20366 * 26 10 8 50 50 H 1.09005 * 109.47352 * 270.18628 * 28 27 3 51 51 H 1.08998 * 109.47566 * 30.19648 * 28 27 3 52 52 H 1.09006 * 109.46508 * 150.19311 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2779 2.1164 1.1198 5 6 2.1099 1.6402 2.5397 6 6 2.7086 3.3353 0.7492 7 6 2.7123 3.3433 -0.7176 8 6 3.1069 4.4577 -1.5957 9 8 3.7286 4.2362 -2.6173 10 7 2.7790 5.7230 -1.2673 11 6 1.9294 5.9974 -0.1004 12 6 0.7460 6.8627 -0.5447 13 6 1.2714 8.1161 -1.2482 14 6 2.0663 7.7101 -2.4913 15 1 1.4268 7.1352 -3.1610 16 6 2.5635 8.9649 -3.2120 17 7 3.2244 8.5806 -4.4617 18 6 3.7533 9.5426 -5.2803 19 1 3.6828 10.5844 -5.0049 20 6 4.3791 9.1786 -6.4647 21 7 4.4645 7.9088 -6.8006 22 14 5.0999 10.4908 -7.5818 23 1 5.7084 9.8467 -8.7735 24 1 4.0237 11.4179 -8.0149 25 1 6.1411 11.2509 -6.8447 26 6 3.2648 6.8544 -2.0691 27 6 2.2694 2.1086 -1.1050 28 6 2.0951 1.6406 -2.5268 29 1 -0.3632 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.1002 1.8674 2.8820 35 1 2.2748 0.5637 2.5838 36 1 2.8329 2.1451 3.1802 37 1 2.9955 4.1468 1.4018 38 1 1.5608 5.0582 0.3122 39 1 2.5081 6.5269 0.6565 40 1 0.1185 6.2956 -1.2322 41 1 0.1600 7.1531 0.3273 42 1 1.9187 8.6699 -0.5681 43 1 0.4320 8.7456 -1.5436 44 1 3.2716 9.4937 -2.5741 45 1 1.7176 9.6157 -3.4336 46 1 3.2880 7.6448 -4.7089 47 1 4.0899 7.2274 -6.2208 48 1 3.7773 6.4806 -2.9555 49 1 3.9517 7.4559 -1.4737 50 1 3.0208 1.1818 -2.8744 51 1 1.2878 0.9098 -2.5725 52 1 1.8508 2.4921 -3.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661797684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:10 Heat of formation + Delta-G solvation = 11.285352 kcal Electronic energy + Delta-G solvation = -29669.413258 eV Core-core repulsion = 25862.426561 eV Total energy + Delta-G solvation = -3806.986697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72188 -39.61860 -37.32375 -35.02619 -34.39560 -32.91145 -32.83094 -31.60296 -29.97483 -29.43776 -29.07031 -26.05517 -25.19695 -24.36270 -23.77153 -22.99785 -21.71850 -21.21114 -20.11806 -19.44782 -17.94514 -17.18936 -16.93977 -16.24407 -15.74516 -15.49996 -14.98811 -14.71484 -14.63604 -14.32637 -13.99420 -13.80766 -13.59476 -13.53457 -13.39643 -13.37020 -13.15427 -12.99470 -12.81220 -12.73328 -12.44927 -12.40710 -12.31995 -12.22182 -11.86321 -11.74537 -11.56150 -11.37421 -10.98587 -10.69106 -10.58918 -10.54020 -10.32301 -10.11715 -9.85908 -9.53800 -9.03634 -8.77002 -8.63680 -8.32185 -8.05714 -6.86979 -5.96769 -2.96383 1.84199 2.26907 2.54831 3.28617 3.55112 3.58940 3.63616 3.81135 4.22681 4.40722 4.52838 4.63913 4.73080 4.75006 4.86823 4.91334 4.96625 5.04017 5.07075 5.09371 5.13717 5.20899 5.24545 5.31462 5.45129 5.47098 5.49957 5.54779 5.60580 5.66954 5.72919 5.74888 5.80499 5.85676 5.90790 5.93299 6.04564 6.10671 6.13563 6.18596 6.21573 6.45940 6.57681 6.68780 6.77881 6.85043 6.92875 7.00487 7.11140 7.75801 7.92296 8.57687 8.89426 9.37286 10.23520 10.38831 11.51801 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.002691 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.559293 B =10402.086266 C =11343.877843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.438 5.438 4 C 0.009 3.991 5 C -0.081 4.081 6 C -0.167 4.167 7 C -0.220 4.220 8 C 0.587 3.413 9 O -0.539 6.539 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.132 4.132 13 C -0.111 4.111 14 C -0.107 4.107 15 H 0.071 0.929 16 C 0.167 3.833 17 N -0.744 5.744 18 C -0.333 4.333 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.943 5.943 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.123 3.877 27 C 0.095 3.905 28 C -0.088 4.088 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.368 0.632 47 H 0.257 0.743 48 H 0.098 0.902 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.062 0.938 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 -16.698 22.783 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.116 5.116 4 C -0.098 4.098 5 C -0.139 4.139 6 C -0.191 4.191 7 C -0.230 4.230 8 C 0.376 3.624 9 O -0.416 6.416 10 N -0.339 5.339 11 C -0.020 4.020 12 C -0.171 4.171 13 C -0.149 4.149 14 C -0.127 4.127 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.390 5.390 18 C -0.464 4.464 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.588 5.588 22 Si 0.912 3.088 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.223 1.223 26 C 0.001 3.999 27 C -0.021 4.021 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.162 0.838 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.202 0.798 47 H 0.068 0.932 48 H 0.116 0.884 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.081 0.919 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.817 -16.653 20.882 28.456 hybrid contribution -0.870 -0.359 1.540 1.804 sum -10.687 -17.011 22.422 30.105 Atomic orbital electron populations 1.22168 0.94221 1.03001 1.03363 1.21851 0.95641 0.80798 1.04430 1.43551 1.51377 1.11661 1.04987 1.20148 1.08531 0.92583 0.88583 1.20303 1.02725 1.01076 0.89769 1.21756 1.07668 0.96798 0.92849 1.20092 1.14977 0.94586 0.93357 1.17475 0.78786 0.81788 0.84307 1.90819 1.40836 1.84003 1.25972 1.47951 1.50740 1.05851 1.29367 1.21924 0.91524 1.00781 0.87722 1.21907 0.97531 0.97068 1.00574 1.21508 0.99744 0.96877 0.96810 1.21692 0.96760 0.97715 0.96546 0.91032 1.20566 0.94849 0.92959 0.87783 1.42426 1.69213 1.06185 1.21200 1.20006 1.34016 0.89276 1.03088 0.91892 1.25770 1.00176 1.01112 0.97364 1.70841 1.48407 0.99521 1.40049 0.83240 0.75783 0.73723 0.76074 1.21075 1.22385 1.22345 1.21647 0.95763 0.86188 0.96309 1.20152 1.02147 0.90722 0.89036 1.20434 1.02272 1.02469 0.89400 0.91694 0.90702 0.91786 0.89104 0.89144 0.91166 0.91976 0.90183 0.83807 0.88701 0.91998 0.91759 0.91131 0.91825 0.91722 0.96230 0.96116 0.79790 0.93167 0.88357 0.91831 0.90160 0.91905 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.09 0.56 6.08 -4.04 -0.02 0.54 16 3 N -0.44 -4.22 2.69 -107.96 -0.29 -4.51 16 4 C 0.01 0.09 6.85 -81.86 -0.56 -0.47 16 5 C -0.08 -0.47 10.06 36.01 0.36 -0.11 16 6 C -0.17 -1.90 8.56 -37.50 -0.32 -2.22 16 7 C -0.22 -3.18 5.35 -103.35 -0.55 -3.74 16 8 C 0.59 10.46 7.32 -12.59 -0.09 10.36 16 9 O -0.54 -11.84 15.75 5.26 0.08 -11.76 16 10 N -0.61 -9.73 2.97 -174.09 -0.52 -10.25 16 11 C 0.10 1.24 5.53 -3.71 -0.02 1.22 16 12 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 13 C -0.11 -1.50 5.17 -26.70 -0.14 -1.64 16 14 C -0.11 -1.90 2.38 -90.50 -0.22 -2.11 16 15 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.17 3.58 5.65 -4.04 -0.02 3.56 16 17 N -0.74 -20.11 5.37 -59.91 -0.32 -20.43 16 18 C -0.33 -9.94 9.99 -15.06 -0.15 -10.10 16 19 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.05 -1.43 5.50 -17.43 -0.10 -1.52 16 21 N -0.94 -30.97 13.70 55.49 0.76 -30.21 16 22 Si 1.08 27.20 29.92 -169.99 -5.09 22.12 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.12 2.26 5.53 -3.71 -0.02 2.24 16 27 C 0.09 1.19 6.88 -81.88 -0.56 0.63 16 28 C -0.09 -1.02 9.25 36.01 0.33 -0.68 16 29 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.48 7.51 -51.93 -0.39 0.09 16 33 H 0.09 0.39 6.90 -51.92 -0.36 0.03 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.28 6.94 -51.93 -0.36 -0.08 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.14 1.43 7.40 -52.48 -0.39 1.04 16 38 H 0.09 1.05 4.68 -51.93 -0.24 0.81 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.37 10.39 5.72 -40.82 -0.23 10.16 16 47 H 0.26 8.46 6.77 -40.82 -0.28 8.18 16 48 H 0.10 2.21 6.20 -51.93 -0.32 1.89 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 52 H 0.09 1.20 7.65 -51.93 -0.40 0.80 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -37.40 405.39 -10.04 -47.44 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.91 Total: 7.69 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.86 Total: -6.20 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.37 Total: -65.40 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -5.09 Total: 22.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.40 -10.04 -47.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661797684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.721 kcal (2) G-P(sol) polarization free energy of solvation -37.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds