Wall clock time and date at job start Tue Mar 31 2020 17:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47485 * 2 1 4 4 C 1.36447 * 124.84975 * 89.97513 * 3 2 1 5 5 C 1.50705 * 125.57404 * 0.04425 * 4 3 2 6 6 C 1.34485 * 108.85784 * 180.02562 * 4 3 2 7 7 C 1.46690 * 106.33298 * 359.97438 * 6 4 3 8 8 C 1.47261 * 126.94375 * 180.02562 * 7 6 4 9 9 O 1.21625 * 120.00043 * 141.24475 * 8 7 6 10 10 N 1.34774 * 120.00132 * 321.23976 * 8 7 6 11 11 C 1.46933 * 120.62935 * 354.65539 * 10 8 7 12 12 C 1.53193 * 108.77256 * 233.58252 * 11 10 8 13 13 C 1.53037 * 109.31534 * 305.36663 * 12 11 10 14 14 C 1.53033 * 109.53911 * 61.36690 * 13 12 11 15 15 H 1.09000 * 109.52712 * 58.60355 * 14 13 12 16 16 C 1.53002 * 109.49776 * 178.68520 * 14 13 12 17 17 N 1.46503 * 109.46752 * 184.83900 * 16 14 13 18 18 C 1.36940 * 119.99412 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00515 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99835 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99772 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00144 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47223 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47089 * 299.99571 * 22 20 18 25 25 H 1.48496 * 109.47240 * 59.99777 * 22 20 18 26 26 C 1.46926 * 120.63392 * 174.63268 * 10 8 7 27 27 C 1.34655 * 124.85553 * 270.30999 * 3 2 1 28 28 C 1.50703 * 125.79524 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.46366 * 59.99363 * 1 2 3 30 30 H 1.08996 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46862 * 300.00314 * 1 2 3 32 32 H 1.09001 * 109.46862 * 239.99686 * 2 1 3 33 33 H 1.09008 * 109.46653 * 120.00403 * 2 1 3 34 34 H 1.09006 * 109.46713 * 269.99888 * 5 4 3 35 35 H 1.08993 * 109.47215 * 29.99772 * 5 4 3 36 36 H 1.08998 * 109.47334 * 150.00186 * 5 4 3 37 37 H 1.08008 * 126.83930 * 180.02562 * 6 4 3 38 38 H 1.09000 * 109.58762 * 353.37366 * 11 10 8 39 39 H 1.09005 * 109.58397 * 113.65845 * 11 10 8 40 40 H 1.08998 * 109.49524 * 65.32406 * 12 11 10 41 41 H 1.09001 * 109.49735 * 185.38026 * 12 11 10 42 42 H 1.09003 * 109.45955 * 301.34442 * 13 12 11 43 43 H 1.09001 * 109.46099 * 181.38920 * 13 12 11 44 44 H 1.08992 * 109.47302 * 64.84031 * 16 14 13 45 45 H 1.09000 * 109.47015 * 304.83090 * 16 14 13 46 46 H 0.96992 * 120.00579 * 359.97438 * 17 16 14 47 47 H 0.97000 * 120.00685 * 0.02562 * 21 20 18 48 48 H 1.09003 * 109.58441 * 6.62350 * 26 10 8 49 49 H 1.09004 * 109.58412 * 246.20366 * 26 10 8 50 50 H 1.09005 * 109.47352 * 270.18628 * 28 27 3 51 51 H 1.08998 * 109.47566 * 30.19648 * 28 27 3 52 52 H 1.09006 * 109.46508 * 150.19311 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2779 2.1164 1.1198 5 6 2.1099 1.6402 2.5397 6 6 2.7086 3.3353 0.7492 7 6 2.7123 3.3433 -0.7176 8 6 3.1069 4.4577 -1.5957 9 8 3.7286 4.2362 -2.6173 10 7 2.7790 5.7230 -1.2673 11 6 1.9294 5.9974 -0.1004 12 6 0.7460 6.8627 -0.5447 13 6 1.2714 8.1161 -1.2482 14 6 2.0663 7.7101 -2.4913 15 1 1.4268 7.1352 -3.1610 16 6 2.5635 8.9649 -3.2120 17 7 3.2244 8.5806 -4.4617 18 6 3.7533 9.5426 -5.2803 19 1 3.6828 10.5844 -5.0049 20 6 4.3791 9.1786 -6.4647 21 7 4.4645 7.9088 -6.8006 22 14 5.0999 10.4908 -7.5818 23 1 5.7084 9.8467 -8.7735 24 1 4.0237 11.4179 -8.0149 25 1 6.1411 11.2509 -6.8447 26 6 3.2648 6.8544 -2.0691 27 6 2.2694 2.1086 -1.1050 28 6 2.0951 1.6406 -2.5268 29 1 -0.3632 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.1002 1.8674 2.8820 35 1 2.2748 0.5637 2.5838 36 1 2.8329 2.1451 3.1802 37 1 2.9955 4.1468 1.4018 38 1 1.5608 5.0582 0.3122 39 1 2.5081 6.5269 0.6565 40 1 0.1185 6.2956 -1.2322 41 1 0.1600 7.1531 0.3273 42 1 1.9187 8.6699 -0.5681 43 1 0.4320 8.7456 -1.5436 44 1 3.2716 9.4937 -2.5741 45 1 1.7176 9.6157 -3.4336 46 1 3.2880 7.6448 -4.7089 47 1 4.0899 7.2274 -6.2208 48 1 3.7773 6.4806 -2.9555 49 1 3.9517 7.4559 -1.4737 50 1 3.0208 1.1818 -2.8744 51 1 1.2878 0.9098 -2.5725 52 1 1.8508 2.4921 -3.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661797684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:09 Heat of formation + Delta-G solvation = -12.349380 kcal Electronic energy + Delta-G solvation = -29670.438137 eV Core-core repulsion = 25862.426561 eV Total energy + Delta-G solvation = -3808.011576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.57644 -40.90375 -38.77245 -36.87211 -35.18721 -34.41618 -33.67851 -33.06931 -31.47827 -30.30998 -30.01693 -27.30292 -26.83787 -25.29752 -25.00880 -24.41826 -22.89929 -22.44402 -21.31188 -20.51681 -19.35133 -18.94643 -18.07459 -17.20308 -16.95563 -16.72276 -16.31776 -16.03219 -15.87956 -15.59903 -15.49307 -15.30445 -14.79173 -14.50735 -14.40153 -14.21461 -14.09003 -13.98068 -13.91148 -13.78873 -13.69399 -13.48716 -13.12171 -13.04200 -12.92513 -12.69313 -12.56898 -12.52273 -12.30382 -12.13283 -12.09281 -11.92434 -11.87562 -11.71608 -11.55633 -11.19546 -10.96693 -10.89038 -9.71755 -9.43526 -9.14900 -8.93937 -8.43176 -5.37008 0.80149 1.42973 1.55094 1.67339 1.75529 1.83501 2.10287 2.33622 2.70736 3.37822 3.55374 3.68936 3.74289 3.78465 3.83641 3.85929 3.94984 4.07905 4.10270 4.12901 4.22289 4.26961 4.33266 4.40503 4.49568 4.54561 4.56103 4.61072 4.66277 4.75754 4.76744 4.81354 4.84071 4.85684 4.87796 4.92851 4.94991 4.98413 5.05592 5.13955 5.14718 5.22515 5.25046 5.27666 5.41600 5.54633 5.56693 5.81510 6.13705 6.37300 6.42833 6.51079 7.05152 7.23881 7.95119 8.08947 9.07903 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.002691 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.559293 B =10402.086266 C =11343.877843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.431 5.431 4 C 0.024 3.976 5 C -0.079 4.079 6 C -0.182 4.182 7 C -0.254 4.254 8 C 0.577 3.423 9 O -0.601 6.601 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.125 4.125 13 C -0.104 4.104 14 C -0.093 4.093 15 H 0.046 0.954 16 C 0.165 3.835 17 N -0.761 5.761 18 C -0.336 4.336 19 H 0.072 0.928 20 C -0.111 4.111 21 N -0.975 5.975 22 Si 1.134 2.866 23 H -0.294 1.294 24 H -0.273 1.273 25 H -0.275 1.275 26 C 0.130 3.870 27 C 0.083 3.917 28 C -0.084 4.084 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.157 0.843 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.356 0.644 47 H 0.239 0.761 48 H 0.045 0.955 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.094 0.906 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.557 -16.918 26.546 33.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.035 4.035 3 N -0.107 5.107 4 C -0.084 4.084 5 C -0.136 4.136 6 C -0.206 4.206 7 C -0.264 4.264 8 C 0.369 3.631 9 O -0.483 6.483 10 N -0.335 5.335 11 C -0.021 4.021 12 C -0.163 4.163 13 C -0.142 4.142 14 C -0.113 4.113 15 H 0.065 0.935 16 C 0.038 3.962 17 N -0.405 5.405 18 C -0.467 4.467 19 H 0.090 0.910 20 C -0.301 4.301 21 N -0.623 5.623 22 Si 0.957 3.043 23 H -0.220 1.220 24 H -0.199 1.199 25 H -0.201 1.201 26 C 0.007 3.993 27 C -0.034 4.034 28 C -0.141 4.141 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.175 0.825 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.045 0.955 46 H 0.188 0.812 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.113 0.887 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.592 -16.854 24.748 32.108 hybrid contribution -0.384 -0.352 0.465 0.698 sum -11.976 -17.205 25.213 32.789 Atomic orbital electron populations 1.22135 0.93223 1.04251 1.02590 1.22224 0.96416 0.78788 1.06052 1.43825 1.50083 1.12744 1.04067 1.20772 1.05848 0.91707 0.90113 1.20452 1.04062 1.02225 0.86894 1.21899 1.09097 0.98484 0.91099 1.20005 1.17433 0.94275 0.94691 1.18171 0.77888 0.83051 0.84007 1.90772 1.43757 1.84967 1.28802 1.48046 1.50756 1.04698 1.30006 1.22255 0.91385 1.02068 0.86416 1.21900 0.97255 0.95533 1.01602 1.21500 0.99670 0.98292 0.94756 1.21541 0.96359 0.95461 0.97965 0.93503 1.20771 0.94540 0.94856 0.86032 1.42717 1.69675 1.05258 1.22860 1.20445 1.32888 0.90124 1.03291 0.91039 1.27450 1.00940 1.02125 0.99629 1.70981 1.50512 1.00448 1.40382 0.82584 0.76073 0.71627 0.73994 1.21967 1.19891 1.20073 1.21329 0.96012 0.87045 0.94913 1.20192 1.02337 0.90796 0.90048 1.20346 1.03070 1.01806 0.88885 0.93326 0.88440 0.91669 0.88580 0.86558 0.89460 0.90225 0.89185 0.82509 0.87280 0.89719 0.93057 0.86979 0.90159 0.90543 0.95570 0.95546 0.81205 0.95099 0.93629 0.91255 0.90771 0.88746 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.24 71.98 0.74 -0.43 16 2 C 0.09 0.77 6.08 86.38 0.53 1.29 16 3 N -0.43 -7.52 2.69 -495.48 -1.33 -8.85 16 4 C 0.02 0.40 6.85 40.98 0.28 0.68 16 5 C -0.08 -0.57 10.06 71.24 0.72 0.15 16 6 C -0.18 -3.92 8.56 23.62 0.20 -3.72 16 7 C -0.25 -7.58 5.35 -19.04 -0.10 -7.68 16 8 C 0.58 22.22 7.32 86.62 0.63 22.85 16 9 O -0.60 -29.47 15.75 -4.11 -0.06 -29.53 16 10 N -0.60 -20.26 2.97 -822.93 -2.45 -22.71 16 11 C 0.10 2.24 5.53 86.36 0.48 2.71 16 12 C -0.12 -2.56 6.08 30.67 0.19 -2.37 16 13 C -0.10 -2.62 5.17 30.62 0.16 -2.46 16 14 C -0.09 -3.42 2.38 -10.72 -0.03 -3.44 16 15 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 16 C 0.16 7.23 5.65 86.38 0.49 7.72 16 17 N -0.76 -43.07 5.37 -343.45 -1.85 -44.92 16 18 C -0.34 -20.55 9.99 84.03 0.84 -19.72 16 19 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.11 -6.99 5.50 84.86 0.47 -6.52 16 21 N -0.98 -67.06 13.70 21.65 0.30 -66.76 16 22 Si 1.13 55.37 29.92 68.60 2.05 57.43 16 23 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 C 0.13 5.12 5.53 86.36 0.48 5.60 16 27 C 0.08 2.13 6.88 41.78 0.29 2.42 16 28 C -0.08 -2.07 9.25 71.24 0.66 -1.41 16 29 H 0.05 0.52 8.11 -2.39 -0.02 0.50 16 30 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.80 7.51 -2.39 -0.02 0.78 16 33 H 0.12 0.50 6.90 -2.38 -0.02 0.48 16 34 H 0.09 0.41 8.14 -2.38 -0.02 0.40 16 35 H 0.08 0.34 6.94 -2.39 -0.02 0.32 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.16 2.79 7.40 -2.91 -0.02 2.77 16 38 H 0.11 2.21 4.68 -2.39 -0.01 2.20 16 39 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.36 21.72 5.72 -92.71 -0.53 21.19 16 47 H 0.24 16.84 6.77 -92.71 -0.63 16.21 16 48 H 0.05 2.28 6.20 -2.39 -0.01 2.26 16 49 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 50 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 51 H 0.09 1.61 7.56 -2.39 -0.02 1.60 16 52 H 0.05 1.70 7.65 -2.38 -0.02 1.69 16 Total: -1.00 -88.90 405.39 4.18 -84.72 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.51 Total: 34.95 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 7.01 Total: -4.32 kcal Atomic # 7 Polarization: -137.92 SS G_CDS: -5.33 Total: -143.24 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.06 Total: -29.53 kcal Atomic # 14 Polarization: 55.37 SS G_CDS: 2.05 Total: 57.43 kcal Total: -88.90 4.18 -84.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661797684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.366 kcal (2) G-P(sol) polarization free energy of solvation -88.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds