Wall clock time and date at job start Tue Mar 31 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 N 1.46495 * 109.46894 * 120.00061 * 2 1 3 5 5 C 1.35533 * 125.68167 * 305.22734 * 4 2 1 6 6 C 1.35455 * 108.87183 * 180.26684 * 5 4 2 7 7 C 1.39838 * 107.86447 * 359.76911 * 6 5 4 8 8 C 1.37656 * 125.67625 * 125.10032 * 4 2 1 9 9 C 1.46680 * 126.23451 * 359.97438 * 8 4 2 10 10 O 1.21702 * 119.99496 * 4.85468 * 9 8 4 11 11 N 1.34768 * 120.00203 * 184.85559 * 9 8 4 12 12 C 1.46504 * 120.00002 * 174.87270 * 11 9 8 13 13 H 1.09000 * 109.47233 * 35.27607 * 12 11 9 14 14 C 1.52997 * 109.47028 * 155.27833 * 12 11 9 15 15 C 1.52997 * 109.47189 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47408 * 299.99811 * 15 14 12 17 17 H 1.09000 * 109.46949 * 300.00038 * 16 15 14 18 18 C 1.53002 * 109.47440 * 179.97438 * 16 15 14 19 19 N 1.46503 * 109.46998 * 175.00067 * 18 16 15 20 20 C 1.36935 * 119.99829 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00123 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99716 * 180.02562 * 20 19 18 23 23 N 1.31614 * 119.99957 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47403 * 59.99250 * 24 22 20 26 26 H 1.48501 * 109.47100 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.46765 * 299.99346 * 24 22 20 28 28 C 1.53008 * 109.46923 * 59.99628 * 16 15 14 29 29 C 1.53002 * 109.47089 * 300.00247 * 28 16 15 30 30 H 1.08998 * 109.46685 * 300.00151 * 1 2 3 31 31 H 1.08999 * 109.46902 * 59.99710 * 1 2 3 32 32 H 1.08998 * 109.46662 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46685 * 239.99849 * 2 1 3 34 34 H 1.08997 * 109.47084 * 60.00091 * 3 2 1 35 35 H 1.09002 * 109.46695 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47086 * 300.00172 * 3 2 1 37 37 H 1.08003 * 125.56154 * 0.02562 * 5 4 2 38 38 H 1.08000 * 126.06582 * 179.78715 * 6 5 4 39 39 H 1.08001 * 126.45475 * 180.02562 * 7 6 5 40 40 H 0.97005 * 120.00123 * 355.14887 * 11 9 8 41 41 H 1.09003 * 109.47409 * 299.99588 * 14 12 11 42 42 H 1.09000 * 109.47297 * 59.99814 * 14 12 11 43 43 H 1.09000 * 109.47097 * 59.99759 * 15 14 12 44 44 H 1.08996 * 109.47715 * 179.97438 * 15 14 12 45 45 H 1.08993 * 109.47144 * 295.00108 * 18 16 15 46 46 H 1.09001 * 109.46738 * 55.00192 * 18 16 15 47 47 H 0.97004 * 119.99654 * 0.02562 * 19 18 16 48 48 H 0.97005 * 119.99692 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.46973 * 60.00425 * 28 16 15 50 50 H 1.08996 * 109.47050 * 180.02562 * 28 16 15 51 51 H 1.09000 * 109.47358 * 299.99942 * 29 28 16 52 52 H 1.09002 * 109.47031 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6831 -0.3903 2.4746 6 6 2.3329 -1.2372 3.3084 7 6 3.1008 -2.1050 2.5255 8 6 2.8922 -1.7542 1.2086 9 6 3.4958 -2.3941 0.0349 10 8 3.3053 -1.9327 -1.0750 11 7 4.2614 -3.4930 0.1856 12 6 4.7718 -4.1975 -0.9931 13 1 5.0033 -3.4753 -1.7761 14 6 6.0398 -4.9670 -0.6180 15 6 6.5725 -5.7032 -1.8489 16 6 5.5124 -6.6832 -2.3555 17 1 5.2811 -7.4051 -1.5722 18 6 6.0449 -7.4191 -3.5867 19 7 5.0797 -8.4406 -4.0004 20 6 5.3428 -9.2310 -5.0872 21 1 6.2616 -9.1009 -5.6397 22 6 4.4280 -10.1986 -5.4795 23 7 3.3081 -10.3567 -4.8065 24 14 4.7873 -11.2772 -6.9617 25 1 6.0388 -12.0410 -6.7264 26 1 3.6619 -12.2236 -7.1696 27 1 4.9468 -10.4247 -8.1672 28 6 4.2442 -5.9137 -2.7306 29 6 3.7116 -5.1775 -1.4996 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.0109 0.3983 2.7790 38 1 2.2691 -1.2417 4.3865 39 1 3.7369 -2.9004 2.8848 40 1 4.4712 -3.8198 1.0746 41 1 6.7950 -4.2689 -0.2567 42 1 5.8084 -5.6891 0.1650 43 1 6.8039 -4.9814 -2.6321 44 1 7.4761 -6.2511 -1.5818 45 1 6.1920 -6.7080 -4.3995 46 1 6.9951 -7.8943 -3.3432 47 1 4.2543 -8.5571 -3.5043 48 1 2.6690 -11.0331 -5.0804 49 1 4.4756 -5.1919 -3.5138 50 1 3.4889 -6.6119 -3.0910 51 1 3.4802 -5.8993 -0.7163 52 1 2.8084 -4.6289 -1.7670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672990777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:29 Heat of formation + Delta-G solvation = -3.962924 kcal Electronic energy + Delta-G solvation = -28737.017732 eV Core-core repulsion = 24929.369820 eV Total energy + Delta-G solvation = -3807.647912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74253 -39.73807 -38.07709 -35.83794 -35.10543 -33.61457 -31.44380 -30.62450 -30.11873 -29.83669 -28.47207 -27.71137 -25.12299 -23.41482 -22.84778 -22.53844 -21.93128 -20.82354 -20.37428 -19.84469 -19.18852 -17.88242 -17.05070 -16.24437 -15.99302 -15.60167 -15.02737 -14.78642 -14.68744 -14.44574 -14.28016 -14.08474 -13.95554 -13.73655 -13.23769 -13.07139 -13.03775 -12.91515 -12.64871 -12.57639 -12.41607 -12.31694 -12.16073 -11.92235 -11.84500 -11.69731 -11.42304 -10.98190 -10.96462 -10.88378 -10.72280 -10.32099 -10.14370 -10.01961 -10.01659 -9.73869 -9.56493 -9.10588 -9.00457 -8.80990 -8.43070 -6.85284 -5.71477 -2.99216 1.28229 2.37802 2.51503 3.15931 3.26151 3.47319 3.51328 3.52583 4.28303 4.52035 4.55318 4.63270 4.69711 4.77572 4.81350 4.87145 5.03081 5.07427 5.09759 5.12263 5.27050 5.29272 5.34509 5.38605 5.50141 5.57415 5.59700 5.61823 5.64413 5.68820 5.71955 5.73806 5.81017 5.95968 6.00167 6.10145 6.14309 6.29000 6.30034 6.31755 6.43718 6.48174 6.56271 6.62707 6.78428 6.79238 6.91943 6.99306 7.02564 7.38895 7.74373 8.07640 8.48094 9.58843 10.18552 10.53120 11.51577 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.002055 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.568222 B =13625.070889 C =14177.556486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 C -0.158 4.158 4 N -0.399 5.399 5 C 0.015 3.985 6 C -0.209 4.209 7 C -0.143 4.143 8 C -0.051 4.051 9 C 0.589 3.411 10 O -0.549 6.549 11 N -0.713 5.713 12 C 0.147 3.853 13 H 0.090 0.910 14 C -0.122 4.122 15 C -0.107 4.107 16 C -0.095 4.095 17 H 0.070 0.930 18 C 0.157 3.843 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.106 4.106 29 C -0.126 4.126 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.164 0.836 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.400 0.600 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.063 0.937 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 23.759 18.121 29.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.002 3.998 3 C -0.215 4.215 4 N -0.072 5.072 5 C -0.120 4.120 6 C -0.233 4.233 7 C -0.170 4.170 8 C -0.164 4.164 9 C 0.377 3.623 10 O -0.429 6.429 11 N -0.363 5.363 12 C 0.044 3.956 13 H 0.108 0.892 14 C -0.161 4.161 15 C -0.145 4.145 16 C -0.114 4.114 17 H 0.088 0.912 18 C 0.029 3.971 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.144 4.144 29 C -0.165 4.165 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.181 0.819 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.235 0.765 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.096 0.904 51 H 0.082 0.918 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.955 24.173 16.814 29.511 hybrid contribution -0.131 -0.829 -0.070 0.843 sum -2.086 23.344 16.744 28.804 Atomic orbital electron populations 1.22156 0.93400 1.03211 1.03029 1.21991 0.95297 0.94334 0.88148 1.22126 1.02217 0.94325 1.02853 1.44205 1.32852 1.23650 1.06522 1.21897 1.04281 1.03128 0.82722 1.20792 1.03454 0.99818 0.99247 1.21329 1.03024 1.01802 0.90810 1.20101 1.04247 0.97286 0.94798 1.17010 0.78277 0.80032 0.86966 1.90733 1.61558 1.64133 1.26449 1.45789 1.52156 1.27816 1.10517 1.21125 0.93588 0.93756 0.87162 0.89236 1.21787 0.95939 0.99053 0.99279 1.21467 0.98448 0.98154 0.96463 1.21356 0.94747 0.96561 0.98709 0.91154 1.20682 0.92777 0.90687 0.92921 1.42382 1.21420 1.39338 1.34487 1.19202 1.02595 1.10813 1.04251 0.91323 1.24731 0.96858 0.99977 0.99588 1.69649 1.10077 1.36931 1.41733 0.86269 0.76931 0.80276 0.82731 1.21338 1.21738 1.21322 1.21488 0.97866 0.98913 0.96153 1.21937 0.97992 0.97785 0.98780 0.92036 0.90396 0.91694 0.85050 0.92148 0.91814 0.90514 0.81896 0.84174 0.84027 0.76496 0.91657 0.91366 0.91738 0.91424 0.96425 0.96514 0.78244 0.93538 0.92127 0.90448 0.91849 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.16 37.16 0.34 -0.80 16 2 C 0.10 0.94 3.45 -67.93 -0.23 0.70 16 3 C -0.16 -1.13 9.30 37.16 0.35 -0.78 16 4 N -0.40 -3.99 2.64 -105.81 -0.28 -4.27 16 5 C 0.02 0.13 10.33 -16.91 -0.17 -0.05 16 6 C -0.21 -1.75 10.81 -39.98 -0.43 -2.18 16 7 C -0.14 -1.32 10.35 -39.12 -0.41 -1.73 16 8 C -0.05 -0.57 6.89 -81.98 -0.56 -1.13 16 9 C 0.59 7.50 7.74 -12.86 -0.10 7.40 16 10 O -0.55 -8.58 14.01 5.19 0.07 -8.51 16 11 N -0.71 -7.59 5.06 -55.11 -0.28 -7.87 16 12 C 0.15 1.76 2.49 -67.93 -0.17 1.59 16 13 H 0.09 1.23 7.52 -51.93 -0.39 0.84 16 14 C -0.12 -1.27 5.39 -26.73 -0.14 -1.42 16 15 C -0.11 -1.33 5.20 -26.73 -0.14 -1.47 16 16 C -0.09 -1.52 2.23 -90.61 -0.20 -1.72 16 17 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 18 C 0.16 3.20 5.65 -4.04 -0.02 3.17 16 19 N -0.73 -18.83 5.33 -59.91 -0.32 -19.15 16 20 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 24 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 C -0.11 -1.71 5.08 -26.73 -0.14 -1.85 16 29 C -0.13 -1.74 5.49 -26.73 -0.15 -1.89 16 30 H 0.06 0.35 7.70 -51.93 -0.40 -0.05 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.54 5.38 -51.93 -0.28 1.26 16 34 H 0.06 0.36 8.02 -51.93 -0.42 -0.06 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.16 0.89 7.90 -52.48 -0.41 0.47 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.98 7.45 -52.49 -0.39 0.59 16 40 H 0.40 3.22 7.50 -40.82 -0.31 2.92 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.31 6.85 -40.82 -0.28 10.03 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.08 1.47 7.18 -51.93 -0.37 1.09 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 52 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -33.44 409.72 -10.50 -43.93 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -9.14 Total: 9.55 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.43 Total: -9.65 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.15 Total: -59.28 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.44 -10.50 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672990777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.970 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds