Wall clock time and date at job start Tue Mar 31 2020 17:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47319 * 2 1 4 4 C 1.52997 * 109.47357 * 119.99708 * 2 1 3 5 5 C 1.50697 * 109.47436 * 295.00163 * 4 2 1 6 6 O 1.21287 * 119.99863 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00416 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00315 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47053 * 35.00246 * 8 7 5 10 10 C 1.53003 * 109.47354 * 155.00155 * 8 7 5 11 11 C 1.53002 * 109.47371 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46761 * 300.00201 * 11 10 8 13 13 H 1.08995 * 109.47150 * 299.99819 * 12 11 10 14 14 C 1.53002 * 109.46761 * 179.97438 * 12 11 10 15 15 N 1.46503 * 109.47169 * 175.00249 * 14 12 11 16 16 C 1.36935 * 120.00185 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99748 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00218 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99646 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47203 * 60.00395 * 20 18 16 22 22 H 1.48504 * 109.46637 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47008 * 300.00024 * 20 18 16 24 24 C 1.52999 * 109.47497 * 60.00113 * 12 11 10 25 25 C 1.52996 * 109.47318 * 275.00235 * 8 7 5 26 26 N 1.46500 * 109.47517 * 240.00045 * 2 1 3 27 27 C 1.36345 * 125.63310 * 299.97650 * 26 2 1 28 28 C 1.34848 * 108.21855 * 180.02562 * 27 26 2 29 29 C 1.40895 * 107.41714 * 359.97438 * 28 27 26 30 30 C 1.34844 * 107.41841 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47371 * 299.99735 * 1 2 3 33 33 H 1.08999 * 109.47120 * 60.00488 * 1 2 3 34 34 H 1.09006 * 109.47132 * 55.00403 * 4 2 1 35 35 H 1.09002 * 109.47742 * 175.00035 * 4 2 1 36 36 H 0.97002 * 120.00007 * 0.02562 * 7 5 4 37 37 H 1.09002 * 109.47187 * 300.00249 * 10 8 7 38 38 H 1.09005 * 109.47092 * 60.00195 * 10 8 7 39 39 H 1.09005 * 109.46950 * 59.99990 * 11 10 8 40 40 H 1.08999 * 109.47059 * 180.02562 * 11 10 8 41 41 H 1.08999 * 109.46891 * 294.99740 * 14 12 11 42 42 H 1.08998 * 109.47319 * 54.99796 * 14 12 11 43 43 H 0.96999 * 119.99761 * 359.97438 * 15 14 12 44 44 H 0.96996 * 119.99970 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.47285 * 59.99555 * 24 12 11 46 46 H 1.08994 * 109.47075 * 179.97438 * 24 12 11 47 47 H 1.09005 * 109.47133 * 299.99809 * 25 8 7 48 48 H 1.09006 * 109.47287 * 60.00091 * 25 8 7 49 49 H 1.08001 * 125.88997 * 0.02562 * 27 26 2 50 50 H 1.07999 * 126.29387 * 180.26704 * 28 27 26 51 51 H 1.07997 * 126.29120 * 180.02562 * 29 28 27 52 52 H 1.07994 * 125.89561 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3918 3.7001 8 6 1.5965 0.3645 4.8933 9 1 0.6204 0.8219 4.7320 10 6 1.5248 -0.5799 6.0949 11 6 1.1189 0.2099 7.3409 12 6 2.1551 1.3025 7.6120 13 1 3.1313 0.8455 7.7736 14 6 1.7489 2.0927 8.8576 15 7 2.7992 3.0596 9.1867 16 6 2.6558 3.8840 10.2706 17 1 1.7682 3.8216 10.8827 18 6 3.6512 4.7997 10.5827 19 7 4.7327 4.8760 9.8364 20 14 3.4558 5.9238 12.0617 21 1 3.3242 5.1038 13.2927 22 1 4.6477 6.8022 12.1766 23 1 2.2402 6.7595 11.8912 24 6 2.2267 2.2470 6.4105 25 6 2.6330 1.4568 5.1643 26 7 2.0184 -0.6906 -1.1961 27 6 1.7612 -1.9886 -1.5246 28 6 2.3807 -2.2590 -2.6914 29 6 3.0443 -1.0846 -3.0986 30 6 2.8054 -0.1416 -2.1648 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -1.7198 1.2952 35 1 3.1263 -0.7994 1.2056 36 1 2.4884 -1.2156 3.7908 37 1 0.7864 -1.3581 5.9019 38 1 2.5010 -1.0373 6.2562 39 1 0.1426 0.6669 7.1793 40 1 1.0684 -0.4629 8.1970 41 1 0.8158 2.6217 8.6640 42 1 1.6111 1.4072 9.6938 43 1 3.5965 3.1152 8.6371 44 1 5.4281 5.5161 10.0542 45 1 1.2504 2.7041 6.2489 46 1 2.9645 3.0256 6.6039 47 1 3.6091 0.9994 5.3256 48 1 2.6840 2.1297 4.3082 49 1 1.1642 -2.6809 -0.9495 50 1 2.3667 -3.2009 -3.2195 51 1 3.6355 -0.9622 -3.9940 52 1 3.1740 0.8734 -2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672991150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:56 Heat of formation + Delta-G solvation = 0.295245 kcal Electronic energy + Delta-G solvation = -28210.104441 eV Core-core repulsion = 24402.641177 eV Total energy + Delta-G solvation = -3807.463264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56451 -40.29730 -38.49369 -35.64161 -35.02797 -33.71854 -31.49165 -30.69756 -30.21611 -29.27919 -28.96761 -27.99396 -25.04861 -23.35600 -22.85868 -22.34666 -20.94131 -20.69980 -20.59338 -19.78394 -19.48589 -17.97626 -17.16116 -16.84702 -16.37009 -15.91554 -15.06947 -14.93407 -14.71497 -14.35017 -14.25310 -14.12586 -13.87028 -13.71405 -13.44137 -13.26929 -13.07498 -13.00239 -12.54386 -12.39943 -12.36080 -12.31225 -12.17218 -11.98545 -11.87558 -11.74325 -11.53232 -11.05086 -11.02312 -10.92859 -10.75792 -10.40328 -10.20255 -10.13597 -10.06805 -9.79437 -9.60123 -9.16801 -8.88049 -8.84029 -8.40774 -6.88568 -5.74422 -3.02351 2.01748 2.30513 2.46132 2.82513 3.05485 3.45239 3.49402 3.50550 4.04647 4.30161 4.42450 4.60177 4.65293 4.71266 4.78105 4.80452 4.95859 4.97213 5.03158 5.05001 5.26174 5.27565 5.31114 5.35526 5.44918 5.50319 5.52644 5.54536 5.60422 5.61509 5.65969 5.82042 5.92810 6.00962 6.04602 6.06490 6.08819 6.22376 6.24283 6.25395 6.35927 6.44538 6.56187 6.73908 6.75125 6.86866 6.97379 6.99812 7.12749 7.20597 7.71558 7.91991 8.45072 9.55907 10.15148 10.49681 11.48578 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.001756 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.139553 B =15943.024231 C =16494.111779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.107 0.893 4 C -0.153 4.153 5 C 0.518 3.482 6 O -0.534 6.534 7 N -0.723 5.723 8 C 0.145 3.855 9 H 0.088 0.912 10 C -0.122 4.122 11 C -0.107 4.107 12 C -0.095 4.095 13 H 0.070 0.930 14 C 0.157 3.843 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.107 4.107 25 C -0.126 4.126 26 N -0.443 5.443 27 C -0.016 4.016 28 C -0.204 4.204 29 C -0.205 4.205 30 C -0.014 4.014 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.399 0.601 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.156 0.844 50 H 0.132 0.868 51 H 0.133 0.867 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.302 -17.708 -22.630 29.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.125 0.875 4 C -0.194 4.194 5 C 0.303 3.697 6 O -0.411 6.411 7 N -0.374 5.374 8 C 0.041 3.959 9 H 0.106 0.894 10 C -0.161 4.161 11 C -0.146 4.146 12 C -0.114 4.114 13 H 0.088 0.912 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.145 4.145 25 C -0.165 4.165 26 N -0.119 5.119 27 C -0.146 4.146 28 C -0.228 4.228 29 C -0.229 4.229 30 C -0.144 4.144 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.174 0.826 50 H 0.150 0.850 51 H 0.151 0.849 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.956 -16.692 -22.251 28.673 hybrid contribution 0.599 0.198 0.675 0.924 sum -6.357 -16.494 -21.577 27.893 Atomic orbital electron populations 1.22285 0.92745 1.02772 1.04576 1.21094 0.96069 0.96716 0.81484 0.87490 1.22023 1.03918 1.00817 0.92605 1.20247 0.79311 0.85631 0.84492 1.90721 1.39706 1.24254 1.86464 1.46147 1.57598 1.27687 1.05932 1.21125 0.99493 0.92253 0.83032 0.89352 1.21790 1.02008 0.97737 0.94518 1.21472 0.99377 0.97405 0.96319 1.21355 0.98839 0.95399 0.95788 0.91199 1.20682 0.92391 0.91121 0.92891 1.42372 1.20454 1.41510 1.33264 1.19202 1.02523 1.11771 1.03501 0.91315 1.24730 0.96830 1.00139 0.99382 1.69645 1.09035 1.39295 1.40381 0.86266 0.76768 0.80562 0.82592 1.21320 1.21716 1.21310 1.21498 1.02408 0.98011 0.92552 1.21931 0.98305 0.97265 0.98975 1.44365 1.39225 1.10188 1.18112 1.21717 1.06794 0.86259 0.99794 1.20889 1.04673 0.99353 0.97930 1.20892 1.06881 0.93942 1.01214 1.21886 1.01121 0.99833 0.91522 0.92390 0.88594 0.91881 0.88203 0.88071 0.76714 0.91771 0.91449 0.91726 0.91434 0.96417 0.96521 0.78262 0.93522 0.92114 0.90423 0.91986 0.91882 0.82624 0.84992 0.84931 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 8.98 37.15 0.33 -0.97 16 2 C 0.15 1.14 2.67 -67.94 -0.18 0.96 16 3 H 0.11 0.91 7.88 -51.93 -0.41 0.50 16 4 C -0.15 -0.99 5.16 -27.89 -0.14 -1.13 16 5 C 0.52 4.79 7.51 -10.99 -0.08 4.71 16 6 O -0.53 -6.90 13.63 5.55 0.08 -6.83 16 7 N -0.72 -5.96 5.08 -53.81 -0.27 -6.24 16 8 C 0.14 1.53 2.45 -67.93 -0.17 1.36 16 9 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 10 C -0.12 -1.15 5.39 -26.73 -0.14 -1.30 16 11 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 12 C -0.10 -1.47 2.23 -90.62 -0.20 -1.67 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 14 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 15 N -0.73 -18.57 5.33 -59.91 -0.32 -18.88 16 16 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C -0.11 -1.66 5.08 -26.70 -0.14 -1.79 16 25 C -0.13 -1.62 5.50 -26.71 -0.15 -1.76 16 26 N -0.44 -3.64 2.62 -110.03 -0.29 -3.92 16 27 C -0.02 -0.13 10.45 -16.75 -0.18 -0.30 16 28 C -0.20 -1.76 10.86 -39.78 -0.43 -2.19 16 29 C -0.20 -1.81 10.86 -39.78 -0.43 -2.25 16 30 C -0.01 -0.12 11.39 -16.75 -0.19 -0.31 16 31 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 32 H 0.10 0.91 5.95 -51.93 -0.31 0.60 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.40 2.21 8.60 -40.82 -0.35 1.86 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.08 1.43 7.18 -51.93 -0.37 1.06 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 51 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 52 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 411.54 15.07 6.20 6.20 Total: -1.00 -33.01 411.54 -10.66 -43.68 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -9.26 Total: 8.49 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.51 Total: -12.37 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.16 Total: -56.75 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: 0.08 Total: -6.83 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.01 -10.66 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672991150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.973 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds