Wall clock time and date at job start Tue Mar 31 2020 17:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47319 * 2 1 4 4 C 1.52997 * 109.47357 * 119.99708 * 2 1 3 5 5 C 1.50697 * 109.47436 * 295.00163 * 4 2 1 6 6 O 1.21287 * 119.99863 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00416 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00315 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47053 * 35.00246 * 8 7 5 10 10 C 1.53003 * 109.47354 * 155.00155 * 8 7 5 11 11 C 1.53002 * 109.47371 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46761 * 300.00201 * 11 10 8 13 13 H 1.08995 * 109.47150 * 299.99819 * 12 11 10 14 14 C 1.53002 * 109.46761 * 179.97438 * 12 11 10 15 15 N 1.46503 * 109.47169 * 175.00249 * 14 12 11 16 16 C 1.36935 * 120.00185 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99748 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00218 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99646 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47203 * 60.00395 * 20 18 16 22 22 H 1.48504 * 109.46637 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47008 * 300.00024 * 20 18 16 24 24 C 1.52999 * 109.47497 * 60.00113 * 12 11 10 25 25 C 1.52996 * 109.47318 * 275.00235 * 8 7 5 26 26 N 1.46500 * 109.47517 * 240.00045 * 2 1 3 27 27 C 1.36345 * 125.63310 * 299.97650 * 26 2 1 28 28 C 1.34848 * 108.21855 * 180.02562 * 27 26 2 29 29 C 1.40895 * 107.41714 * 359.97438 * 28 27 26 30 30 C 1.34844 * 107.41841 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47371 * 299.99735 * 1 2 3 33 33 H 1.08999 * 109.47120 * 60.00488 * 1 2 3 34 34 H 1.09006 * 109.47132 * 55.00403 * 4 2 1 35 35 H 1.09002 * 109.47742 * 175.00035 * 4 2 1 36 36 H 0.97002 * 120.00007 * 0.02562 * 7 5 4 37 37 H 1.09002 * 109.47187 * 300.00249 * 10 8 7 38 38 H 1.09005 * 109.47092 * 60.00195 * 10 8 7 39 39 H 1.09005 * 109.46950 * 59.99990 * 11 10 8 40 40 H 1.08999 * 109.47059 * 180.02562 * 11 10 8 41 41 H 1.08999 * 109.46891 * 294.99740 * 14 12 11 42 42 H 1.08998 * 109.47319 * 54.99796 * 14 12 11 43 43 H 0.96999 * 119.99761 * 359.97438 * 15 14 12 44 44 H 0.96996 * 119.99970 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.47285 * 59.99555 * 24 12 11 46 46 H 1.08994 * 109.47075 * 179.97438 * 24 12 11 47 47 H 1.09005 * 109.47133 * 299.99809 * 25 8 7 48 48 H 1.09006 * 109.47287 * 60.00091 * 25 8 7 49 49 H 1.08001 * 125.88997 * 0.02562 * 27 26 2 50 50 H 1.07999 * 126.29387 * 180.26704 * 28 27 26 51 51 H 1.07997 * 126.29120 * 180.02562 * 29 28 27 52 52 H 1.07994 * 125.89561 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3918 3.7001 8 6 1.5965 0.3645 4.8933 9 1 0.6204 0.8219 4.7320 10 6 1.5248 -0.5799 6.0949 11 6 1.1189 0.2099 7.3409 12 6 2.1551 1.3025 7.6120 13 1 3.1313 0.8455 7.7736 14 6 1.7489 2.0927 8.8576 15 7 2.7992 3.0596 9.1867 16 6 2.6558 3.8840 10.2706 17 1 1.7682 3.8216 10.8827 18 6 3.6512 4.7997 10.5827 19 7 4.7327 4.8760 9.8364 20 14 3.4558 5.9238 12.0617 21 1 3.3242 5.1038 13.2927 22 1 4.6477 6.8022 12.1766 23 1 2.2402 6.7595 11.8912 24 6 2.2267 2.2470 6.4105 25 6 2.6330 1.4568 5.1643 26 7 2.0184 -0.6906 -1.1961 27 6 1.7612 -1.9886 -1.5246 28 6 2.3807 -2.2590 -2.6914 29 6 3.0443 -1.0846 -3.0986 30 6 2.8054 -0.1416 -2.1648 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -1.7198 1.2952 35 1 3.1263 -0.7994 1.2056 36 1 2.4884 -1.2156 3.7908 37 1 0.7864 -1.3581 5.9019 38 1 2.5010 -1.0373 6.2562 39 1 0.1426 0.6669 7.1793 40 1 1.0684 -0.4629 8.1970 41 1 0.8158 2.6217 8.6640 42 1 1.6111 1.4072 9.6938 43 1 3.5965 3.1152 8.6371 44 1 5.4281 5.5161 10.0542 45 1 1.2504 2.7041 6.2489 46 1 2.9645 3.0256 6.6039 47 1 3.6091 0.9994 5.3256 48 1 2.6840 2.1297 4.3082 49 1 1.1642 -2.6809 -0.9495 50 1 2.3667 -3.2009 -3.2195 51 1 3.6355 -0.9622 -3.9940 52 1 3.1740 0.8734 -2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672991150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:55 Heat of formation + Delta-G solvation = -18.705164 kcal Electronic energy + Delta-G solvation = -28210.928361 eV Core-core repulsion = 24402.641177 eV Total energy + Delta-G solvation = -3808.287183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.17404 -41.10314 -39.55005 -36.84160 -35.92068 -35.13088 -33.15376 -31.73649 -31.17207 -30.34012 -29.58873 -28.80755 -26.66706 -24.67216 -23.88262 -23.45873 -22.00225 -21.54124 -21.29909 -20.77822 -20.23227 -19.16399 -18.59182 -17.66216 -17.16148 -16.68497 -16.59989 -16.03807 -15.63773 -15.52990 -15.29867 -15.24974 -14.99227 -14.78197 -14.58001 -14.32824 -14.09645 -13.76067 -13.65534 -13.45552 -13.21558 -13.11952 -13.09674 -12.94520 -12.90381 -12.80533 -12.69135 -12.36234 -12.21291 -12.11368 -12.05325 -12.02726 -11.89759 -11.47984 -11.27343 -11.14914 -10.90951 -10.79522 -10.01882 -9.50100 -9.01935 -8.98689 -7.95622 -5.23842 1.40824 1.45734 1.49129 1.55233 1.59500 1.81676 2.19715 2.38539 2.55634 3.37518 3.46463 3.66709 3.73869 3.76290 3.83050 3.97485 4.08048 4.14520 4.16901 4.22865 4.43057 4.43282 4.46015 4.47525 4.51521 4.53962 4.57637 4.59563 4.69444 4.75912 4.82383 4.87959 4.94244 4.95320 5.07202 5.09686 5.13653 5.19380 5.22341 5.24959 5.31960 5.44744 5.46116 5.48447 5.52695 5.55285 5.61947 6.14187 6.27033 6.38506 6.53751 6.56178 7.25588 7.33043 8.11078 8.33950 9.27834 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.001756 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.139553 B =15943.024231 C =16494.111779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.517 3.483 6 O -0.575 6.575 7 N -0.711 5.711 8 C 0.153 3.847 9 H 0.071 0.929 10 C -0.112 4.112 11 C -0.102 4.102 12 C -0.084 4.084 13 H 0.066 0.934 14 C 0.152 3.848 15 N -0.744 5.744 16 C -0.248 4.248 17 H 0.074 0.926 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.279 1.279 24 C -0.101 4.101 25 C -0.117 4.117 26 N -0.443 5.443 27 C -0.016 4.016 28 C -0.223 4.223 29 C -0.220 4.220 30 C -0.031 4.031 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.417 0.583 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.014 0.986 42 H 0.022 0.978 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.051 0.949 46 H 0.039 0.961 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.181 0.819 50 H 0.143 0.857 51 H 0.140 0.860 52 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 -20.284 -22.628 31.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.111 0.889 4 C -0.180 4.180 5 C 0.303 3.697 6 O -0.455 6.455 7 N -0.362 5.362 8 C 0.048 3.952 9 H 0.089 0.911 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.102 4.102 13 H 0.084 0.916 14 C 0.026 3.974 15 N -0.387 5.387 16 C -0.380 4.380 17 H 0.092 0.908 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.205 1.205 24 C -0.140 4.140 25 C -0.156 4.156 26 N -0.119 5.119 27 C -0.146 4.146 28 C -0.248 4.248 29 C -0.245 4.245 30 C -0.161 4.161 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.254 0.746 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.032 0.968 42 H 0.039 0.961 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.198 0.802 50 H 0.161 0.839 51 H 0.157 0.843 52 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.750 -19.325 -22.248 30.471 hybrid contribution 0.798 1.007 0.634 1.433 sum -6.952 -18.317 -21.615 29.173 Atomic orbital electron populations 1.22194 0.92865 1.03328 1.03343 1.21029 0.95903 0.96298 0.81999 0.88933 1.21951 1.04644 1.01232 0.90216 1.20721 0.78427 0.85160 0.85349 1.90721 1.41562 1.26168 1.87028 1.45959 1.57392 1.27954 1.04922 1.20863 0.97597 0.92110 0.84638 0.91108 1.21717 1.03656 0.97396 0.92176 1.21432 0.97911 0.96455 0.98257 1.21245 0.99890 0.95778 0.93320 0.91605 1.20898 0.90837 0.90516 0.95134 1.42596 1.21313 1.42277 1.32533 1.19634 1.02450 1.11875 1.04025 0.90804 1.25578 0.96782 1.02067 1.02477 1.69810 1.09849 1.40188 1.42221 0.85198 0.76551 0.78525 0.79416 1.20210 1.22095 1.20549 1.21374 1.00701 0.97598 0.94297 1.21812 0.99520 0.97544 0.96675 1.44402 1.39094 1.10383 1.18043 1.22136 1.06402 0.86272 0.99752 1.21172 1.05142 0.99820 0.98620 1.21154 1.07276 0.94389 1.01691 1.22170 1.01574 1.00489 0.91830 0.90881 0.90259 0.92626 0.85491 0.86925 0.74612 0.89033 0.90000 0.91696 0.90127 0.96817 0.96052 0.79408 0.94033 0.93004 0.94260 0.91261 0.93552 0.80191 0.83914 0.84261 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.98 71.98 0.65 -1.68 16 2 C 0.15 2.11 2.67 44.99 0.12 2.23 16 3 H 0.09 1.57 7.88 -2.39 -0.02 1.55 16 4 C -0.14 -1.45 5.16 29.85 0.15 -1.29 16 5 C 0.52 8.66 7.51 87.66 0.66 9.32 16 6 O -0.57 -14.71 13.63 -3.05 -0.04 -14.75 16 7 N -0.71 -9.84 5.08 -442.55 -2.25 -12.09 16 8 C 0.15 2.95 2.45 44.99 0.11 3.06 16 9 H 0.07 1.68 7.58 -2.39 -0.02 1.66 16 10 C -0.11 -1.72 5.39 30.60 0.16 -1.55 16 11 C -0.10 -2.18 5.20 30.60 0.16 -2.02 16 12 C -0.08 -2.55 2.23 -10.79 -0.02 -2.57 16 13 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 14 C 0.15 6.12 5.65 86.38 0.49 6.60 16 15 N -0.74 -38.61 5.33 -343.45 -1.83 -40.44 16 16 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 19 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 20 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 C -0.10 -3.25 5.08 30.61 0.16 -3.09 16 25 C -0.12 -2.97 5.50 30.61 0.17 -2.80 16 26 N -0.44 -6.59 2.62 -502.03 -1.31 -7.91 16 27 C -0.02 -0.22 10.45 83.21 0.87 0.65 16 28 C -0.22 -3.51 10.86 22.14 0.24 -3.27 16 29 C -0.22 -3.74 10.86 22.14 0.24 -3.50 16 30 C -0.03 -0.51 11.39 83.21 0.95 0.44 16 31 H 0.07 0.82 7.92 -2.39 -0.02 0.80 16 32 H 0.08 1.47 5.95 -2.39 -0.01 1.46 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 0.67 8.06 -2.38 -0.02 0.65 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.42 2.98 8.60 -92.71 -0.80 2.18 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.37 20.57 6.85 -92.71 -0.64 19.93 16 44 H 0.25 15.14 8.31 -92.71 -0.77 14.36 16 45 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.04 1.54 7.18 -2.39 -0.02 1.52 16 47 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 50 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 51 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 52 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -73.30 411.54 2.74 -70.55 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.54 Total: 32.68 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 6.41 Total: -16.85 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -5.11 Total: -120.48 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.04 Total: -14.75 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -73.30 2.74 -70.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672991150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.848 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds