Wall clock time and date at job start Tue Mar 31 2020 17:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46799 * 2 1 4 4 C 1.52997 * 109.46931 * 240.00050 * 2 1 3 5 5 C 1.50700 * 109.47623 * 64.99840 * 4 2 1 6 6 O 1.21282 * 119.99502 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00402 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99925 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45935 * 34.98057 * 8 7 5 10 10 C 1.53031 * 109.46236 * 275.00388 * 8 7 5 11 11 C 1.53192 * 109.33945 * 178.61382 * 10 8 7 12 12 N 1.46993 * 108.73906 * 54.62213 * 11 10 8 13 13 C 1.36934 * 120.61417 * 126.38786 * 12 11 10 14 14 H 1.08000 * 120.00139 * 331.84881 * 13 12 11 15 15 C 1.38812 * 120.00097 * 151.83970 * 13 12 11 16 16 N 1.31622 * 119.99895 * 343.08216 * 15 13 12 17 17 Si 1.86799 * 120.00244 * 163.08183 * 15 13 12 18 18 H 1.48504 * 109.47034 * 60.00026 * 17 15 13 19 19 H 1.48498 * 109.47346 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47092 * 300.00279 * 17 15 13 21 21 C 1.46926 * 118.75484 * 306.40896 * 12 11 10 22 22 C 1.53039 * 109.44637 * 154.94312 * 8 7 5 23 23 C 1.53009 * 109.49921 * 301.33379 * 22 8 7 24 24 C 1.52998 * 109.49669 * 61.42908 * 22 8 7 25 25 N 1.46501 * 109.47106 * 120.00165 * 2 1 3 26 26 C 1.36339 * 125.63889 * 59.69564 * 25 2 1 27 27 C 1.34848 * 108.22030 * 179.83128 * 26 25 2 28 28 C 1.40892 * 107.41522 * 0.42174 * 27 26 25 29 29 C 1.34852 * 107.41778 * 359.74146 * 28 27 26 30 30 H 1.08997 * 109.47326 * 60.00194 * 1 2 3 31 31 H 1.09012 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47540 * 300.00006 * 1 2 3 33 33 H 1.09005 * 109.47512 * 304.99822 * 4 2 1 34 34 H 1.08999 * 109.47100 * 185.00038 * 4 2 1 35 35 H 0.97001 * 119.99959 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.50044 * 298.57923 * 10 8 7 37 37 H 1.09004 * 109.49750 * 58.64710 * 10 8 7 38 38 H 1.09000 * 109.58552 * 174.44489 * 11 10 8 39 39 H 1.09006 * 109.58484 * 294.86105 * 11 10 8 40 40 H 0.97004 * 120.00038 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.59043 * 293.82145 * 21 12 11 42 42 H 1.09002 * 109.58291 * 173.39268 * 21 12 11 43 43 H 1.08997 * 109.46750 * 59.99780 * 23 22 8 44 44 H 1.08992 * 109.47081 * 180.02562 * 23 22 8 45 45 H 1.09000 * 109.46835 * 300.00043 * 23 22 8 46 46 H 1.09001 * 109.47573 * 60.00217 * 24 22 8 47 47 H 1.09004 * 109.47483 * 179.97438 * 24 22 8 48 48 H 1.08996 * 109.47575 * 299.99561 * 24 22 8 49 49 H 1.08001 * 125.88990 * 359.95799 * 26 25 2 50 50 H 1.07999 * 126.29284 * 180.16121 * 27 26 25 51 51 H 1.08002 * 126.29202 * 179.73409 * 28 27 26 52 52 H 1.08002 * 125.89111 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0108 1.0869 -2.3633 7 7 1.9852 -0.3914 -3.7001 8 6 1.5971 0.3649 -4.8933 9 1 1.6272 1.4319 -4.6726 10 6 0.1781 -0.0302 -5.3082 11 6 -0.2378 0.7872 -6.5353 12 7 0.7719 0.6058 -7.5880 13 6 0.4057 0.1969 -8.8425 14 1 -0.4758 -0.4126 -8.9759 15 6 1.1673 0.5660 -9.9427 16 7 2.0267 1.5582 -9.8452 17 14 0.9727 -0.3453 -11.5617 18 1 -0.4287 -0.2174 -12.0363 19 1 1.8928 0.2371 -12.5713 20 1 1.2995 -1.7804 -11.3643 21 6 2.1813 0.8709 -7.2687 22 6 2.5693 0.0524 -6.0332 23 6 3.9923 0.4172 -5.6052 24 6 2.5023 -1.4392 -6.3671 25 7 2.0183 -0.6906 1.1962 26 6 1.7560 -1.9868 1.5278 27 6 2.3800 -2.2587 2.6919 28 6 3.0441 -1.0846 3.0986 29 6 2.8054 -0.1416 2.1646 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6053 -1.7198 -1.2952 34 1 3.1262 -0.7995 -1.2056 35 1 2.4891 -1.2153 -3.7908 36 1 0.1529 -1.0921 -5.5530 37 1 -0.5102 0.1704 -4.4871 38 1 -1.2071 0.4407 -6.8938 39 1 -0.3009 1.8420 -6.2674 40 1 2.5592 1.8159 -10.6140 41 1 2.3155 1.9324 -7.0607 42 1 2.8080 0.5795 -8.1116 43 1 4.2668 -0.1632 -4.7245 44 1 4.6842 0.1950 -6.4175 45 1 4.0394 1.4803 -5.3690 46 1 1.4887 -1.6979 -6.6732 47 1 3.1946 -1.6612 -7.1793 48 1 2.7757 -2.0212 -5.4870 49 1 1.1541 -2.6773 0.9558 50 1 2.3689 -3.2018 3.2181 51 1 3.6356 -0.9622 3.9940 52 1 3.1745 0.8732 2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674034659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:45 Heat of formation + Delta-G solvation = 27.641779 kcal Electronic energy + Delta-G solvation = -29856.974708 eV Core-core repulsion = 26050.697279 eV Total energy + Delta-G solvation = -3806.277429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.43867 -40.14477 -38.35342 -35.25611 -34.58407 -32.94238 -32.07672 -30.23076 -29.45205 -28.88207 -28.03750 -26.82184 -25.96629 -24.99293 -23.16876 -22.12355 -20.71458 -20.62796 -20.26201 -19.60064 -18.22345 -17.75883 -17.05281 -16.27239 -15.93489 -15.50554 -14.93583 -14.70687 -14.59335 -14.09786 -13.95866 -13.78332 -13.61241 -13.46182 -13.29921 -13.09860 -12.86070 -12.71482 -12.44487 -12.36359 -12.23013 -11.98960 -11.71120 -11.62648 -11.55367 -11.37831 -11.33731 -11.09649 -10.91185 -10.73575 -10.62492 -10.28917 -10.16393 -10.03110 -9.86689 -9.70148 -9.46229 -8.77457 -8.74668 -8.49028 -8.30334 -6.71138 -5.83223 -3.25491 2.13519 2.60214 2.65945 2.92185 3.34435 3.39430 3.41314 3.41901 4.23712 4.45607 4.49804 4.68107 4.84942 4.96086 5.07638 5.14339 5.15463 5.22278 5.23412 5.36060 5.39592 5.46892 5.50669 5.52608 5.60500 5.68543 5.80400 5.88620 5.99039 6.02161 6.04281 6.13969 6.16012 6.19284 6.25343 6.35054 6.40968 6.42141 6.58322 6.65168 6.77216 6.85511 6.86860 6.93173 6.98906 7.10975 7.24265 7.26729 7.53914 7.63293 7.75906 8.26013 8.40655 9.16831 9.79850 10.36904 11.25433 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.002365 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.597773 B =11838.021486 C =12045.592196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.106 0.894 4 C -0.153 4.153 5 C 0.515 3.485 6 O -0.541 6.541 7 N -0.717 5.717 8 C 0.163 3.837 9 H 0.081 0.919 10 C -0.142 4.142 11 C 0.147 3.853 12 N -0.589 5.589 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.186 3.814 22 C -0.097 4.097 23 C -0.134 4.134 24 C -0.127 4.127 25 N -0.442 5.442 26 C -0.014 4.014 27 C -0.205 4.205 28 C -0.206 4.206 29 C -0.015 4.015 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.396 0.604 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.019 0.981 42 H 0.093 0.907 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.029 0.971 49 H 0.156 0.844 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -6.640 20.031 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 H 0.124 0.876 4 C -0.194 4.194 5 C 0.300 3.700 6 O -0.419 6.419 7 N -0.367 5.367 8 C 0.060 3.940 9 H 0.099 0.901 10 C -0.182 4.182 11 C 0.020 3.980 12 N -0.311 5.311 13 C -0.381 4.381 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.060 3.940 22 C -0.100 4.100 23 C -0.192 4.192 24 C -0.184 4.184 25 N -0.117 5.117 26 C -0.144 4.144 27 C -0.230 4.230 28 C -0.231 4.231 29 C -0.145 4.145 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.111 0.889 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.048 0.952 49 H 0.174 0.826 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.178 -5.631 19.625 20.532 hybrid contribution 0.305 -0.913 -0.854 1.287 sum 2.483 -6.544 18.770 20.033 Atomic orbital electron populations 1.22287 0.92733 1.02789 1.04544 1.21102 0.96090 0.96620 0.81461 0.87576 1.22025 1.03665 1.00880 0.92840 1.20185 0.79635 0.85655 0.84527 1.90691 1.40038 1.24534 1.86596 1.46354 1.56733 1.27665 1.05963 1.21027 0.94489 0.95928 0.82563 0.90065 1.22438 0.95421 1.01341 0.99009 1.20890 0.93081 0.95905 0.88144 1.44052 1.00812 1.78612 1.07637 1.19105 1.11215 1.24973 0.82812 0.91761 1.25035 1.00297 0.96625 0.97530 1.70012 1.27874 1.26549 1.30211 0.86398 0.77524 0.79541 0.83473 1.20894 1.21669 1.21057 1.20826 0.86208 0.94248 0.92760 1.21571 0.93446 0.97804 0.97139 1.21763 0.96440 1.00829 1.00148 1.21745 1.03261 0.94274 0.99136 1.44397 1.38963 1.10289 1.18079 1.21731 1.06572 0.86372 0.99732 1.20874 1.04736 0.99308 0.98088 1.20874 1.07009 0.93969 1.01207 1.21867 1.01307 0.99772 0.91526 0.88412 0.92417 0.92048 0.88369 0.88364 0.76870 0.91871 0.92844 0.92571 0.96260 0.93550 0.96261 0.88898 0.93906 0.92552 0.93075 0.91081 0.92903 0.95228 0.82613 0.85042 0.85015 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 8.97 37.16 0.33 -1.29 16 2 C 0.15 1.42 2.67 -67.93 -0.18 1.24 16 3 H 0.11 1.08 7.88 -51.93 -0.41 0.67 16 4 C -0.15 -1.37 5.17 -27.88 -0.14 -1.52 16 5 C 0.51 6.36 7.51 -10.99 -0.08 6.27 16 6 O -0.54 -8.48 13.63 5.56 0.08 -8.40 16 7 N -0.72 -8.96 4.29 -53.77 -0.23 -9.19 16 8 C 0.16 2.62 1.57 -67.89 -0.11 2.52 16 9 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 10 C -0.14 -2.42 5.31 -26.62 -0.14 -2.56 16 11 C 0.15 3.01 6.52 -3.67 -0.02 2.99 16 12 N -0.59 -13.93 2.43 -172.26 -0.42 -14.35 16 13 C -0.25 -6.59 9.58 -15.06 -0.14 -6.73 16 14 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 15 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 16 N -0.90 -25.34 11.20 55.49 0.62 -24.71 16 17 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.19 4.15 3.98 -3.71 -0.01 4.13 16 22 C -0.10 -1.64 0.56 -154.39 -0.09 -1.73 16 23 C -0.13 -1.99 8.31 37.16 0.31 -1.68 16 24 C -0.13 -2.04 7.83 37.16 0.29 -1.74 16 25 N -0.44 -4.28 2.62 -110.03 -0.29 -4.57 16 26 C -0.01 -0.13 10.45 -16.75 -0.18 -0.31 16 27 C -0.21 -2.02 10.86 -39.78 -0.43 -2.46 16 28 C -0.21 -2.04 10.86 -39.78 -0.43 -2.47 16 29 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 30 H 0.10 1.14 5.95 -51.93 -0.31 0.84 16 31 H 0.06 0.51 7.91 -51.92 -0.41 0.10 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.15 6.66 -40.82 -0.27 3.88 16 36 H 0.06 1.07 6.34 -51.93 -0.33 0.74 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 43 H 0.04 0.53 7.36 -51.93 -0.38 0.15 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 49 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 50 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 51 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 52 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -29.57 399.37 -9.48 -39.05 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.92 Total: 5.75 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.31 Total: -5.65 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.32 Total: -52.82 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.57 -9.48 -39.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674034659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.694 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds