Wall clock time and date at job start Tue Mar 31 2020 17:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46799 * 2 1 4 4 C 1.52997 * 109.46931 * 240.00050 * 2 1 3 5 5 C 1.50700 * 109.47623 * 64.99840 * 4 2 1 6 6 O 1.21282 * 119.99502 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00402 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99925 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45935 * 34.98057 * 8 7 5 10 10 C 1.53031 * 109.46236 * 275.00388 * 8 7 5 11 11 C 1.53192 * 109.33945 * 178.61382 * 10 8 7 12 12 N 1.46993 * 108.73906 * 54.62213 * 11 10 8 13 13 C 1.36934 * 120.61417 * 126.38786 * 12 11 10 14 14 H 1.08000 * 120.00139 * 331.84881 * 13 12 11 15 15 C 1.38812 * 120.00097 * 151.83970 * 13 12 11 16 16 N 1.31622 * 119.99895 * 343.08216 * 15 13 12 17 17 Si 1.86799 * 120.00244 * 163.08183 * 15 13 12 18 18 H 1.48504 * 109.47034 * 60.00026 * 17 15 13 19 19 H 1.48498 * 109.47346 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47092 * 300.00279 * 17 15 13 21 21 C 1.46926 * 118.75484 * 306.40896 * 12 11 10 22 22 C 1.53039 * 109.44637 * 154.94312 * 8 7 5 23 23 C 1.53009 * 109.49921 * 301.33379 * 22 8 7 24 24 C 1.52998 * 109.49669 * 61.42908 * 22 8 7 25 25 N 1.46501 * 109.47106 * 120.00165 * 2 1 3 26 26 C 1.36339 * 125.63889 * 59.69564 * 25 2 1 27 27 C 1.34848 * 108.22030 * 179.83128 * 26 25 2 28 28 C 1.40892 * 107.41522 * 0.42174 * 27 26 25 29 29 C 1.34852 * 107.41778 * 359.74146 * 28 27 26 30 30 H 1.08997 * 109.47326 * 60.00194 * 1 2 3 31 31 H 1.09012 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47540 * 300.00006 * 1 2 3 33 33 H 1.09005 * 109.47512 * 304.99822 * 4 2 1 34 34 H 1.08999 * 109.47100 * 185.00038 * 4 2 1 35 35 H 0.97001 * 119.99959 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.50044 * 298.57923 * 10 8 7 37 37 H 1.09004 * 109.49750 * 58.64710 * 10 8 7 38 38 H 1.09000 * 109.58552 * 174.44489 * 11 10 8 39 39 H 1.09006 * 109.58484 * 294.86105 * 11 10 8 40 40 H 0.97004 * 120.00038 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.59043 * 293.82145 * 21 12 11 42 42 H 1.09002 * 109.58291 * 173.39268 * 21 12 11 43 43 H 1.08997 * 109.46750 * 59.99780 * 23 22 8 44 44 H 1.08992 * 109.47081 * 180.02562 * 23 22 8 45 45 H 1.09000 * 109.46835 * 300.00043 * 23 22 8 46 46 H 1.09001 * 109.47573 * 60.00217 * 24 22 8 47 47 H 1.09004 * 109.47483 * 179.97438 * 24 22 8 48 48 H 1.08996 * 109.47575 * 299.99561 * 24 22 8 49 49 H 1.08001 * 125.88990 * 359.95799 * 26 25 2 50 50 H 1.07999 * 126.29284 * 180.16121 * 27 26 25 51 51 H 1.08002 * 126.29202 * 179.73409 * 28 27 26 52 52 H 1.08002 * 125.89111 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0108 1.0869 -2.3633 7 7 1.9852 -0.3914 -3.7001 8 6 1.5971 0.3649 -4.8933 9 1 1.6272 1.4319 -4.6726 10 6 0.1781 -0.0302 -5.3082 11 6 -0.2378 0.7872 -6.5353 12 7 0.7719 0.6058 -7.5880 13 6 0.4057 0.1969 -8.8425 14 1 -0.4758 -0.4126 -8.9759 15 6 1.1673 0.5660 -9.9427 16 7 2.0267 1.5582 -9.8452 17 14 0.9727 -0.3453 -11.5617 18 1 -0.4287 -0.2174 -12.0363 19 1 1.8928 0.2371 -12.5713 20 1 1.2995 -1.7804 -11.3643 21 6 2.1813 0.8709 -7.2687 22 6 2.5693 0.0524 -6.0332 23 6 3.9923 0.4172 -5.6052 24 6 2.5023 -1.4392 -6.3671 25 7 2.0183 -0.6906 1.1962 26 6 1.7560 -1.9868 1.5278 27 6 2.3800 -2.2587 2.6919 28 6 3.0441 -1.0846 3.0986 29 6 2.8054 -0.1416 2.1646 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6053 -1.7198 -1.2952 34 1 3.1262 -0.7995 -1.2056 35 1 2.4891 -1.2153 -3.7908 36 1 0.1529 -1.0921 -5.5530 37 1 -0.5102 0.1704 -4.4871 38 1 -1.2071 0.4407 -6.8938 39 1 -0.3009 1.8420 -6.2674 40 1 2.5592 1.8159 -10.6140 41 1 2.3155 1.9324 -7.0607 42 1 2.8080 0.5795 -8.1116 43 1 4.2668 -0.1632 -4.7245 44 1 4.6842 0.1950 -6.4175 45 1 4.0394 1.4803 -5.3690 46 1 1.4887 -1.6979 -6.6732 47 1 3.1946 -1.6612 -7.1793 48 1 2.7757 -2.0212 -5.4870 49 1 1.1541 -2.6773 0.9558 50 1 2.3689 -3.2018 3.2181 51 1 3.6356 -0.9622 3.9940 52 1 3.1745 0.8732 2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674034659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:43 Heat of formation + Delta-G solvation = 12.845059 kcal Electronic energy + Delta-G solvation = -29857.616341 eV Core-core repulsion = 26050.697279 eV Total energy + Delta-G solvation = -3806.919063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.16347 -41.30983 -39.67712 -36.41802 -35.82356 -34.27946 -33.82972 -31.50004 -30.55531 -29.57804 -28.95845 -28.13470 -27.60497 -26.60035 -24.34768 -23.34380 -22.28961 -21.51341 -21.20512 -20.35066 -19.60341 -18.85214 -18.49683 -17.37979 -17.08183 -16.79349 -16.43113 -15.76967 -15.56622 -15.51147 -15.28539 -15.05798 -14.94037 -14.69671 -14.47808 -14.19933 -13.96793 -13.85587 -13.55270 -13.26585 -13.10027 -13.05288 -12.91491 -12.88260 -12.80492 -12.70983 -12.58866 -12.44957 -12.35551 -12.28390 -12.08608 -11.94322 -11.82003 -11.63297 -11.30497 -11.16274 -10.79804 -10.52360 -9.93937 -9.48310 -8.99905 -8.66944 -7.86213 -5.31307 1.43125 1.47998 1.49258 1.56090 1.64472 1.84865 2.21606 2.42842 2.51874 3.28989 3.49370 3.63657 3.72310 3.76886 3.88993 4.00527 4.11963 4.16515 4.24538 4.36450 4.45017 4.45591 4.48926 4.53446 4.59614 4.67513 4.71231 4.77702 4.81988 4.86967 4.88367 4.97239 4.98013 4.99509 5.04322 5.11198 5.22105 5.26851 5.32973 5.36246 5.44544 5.46503 5.50433 5.60107 5.61782 5.71312 5.75822 6.16387 6.40008 6.41094 6.55562 6.60753 7.16059 7.29154 7.85964 8.38833 9.20134 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.002365 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.597773 B =11838.021486 C =12045.592196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.153 3.847 3 H 0.096 0.904 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.575 6.575 7 N -0.706 5.706 8 C 0.177 3.823 9 H 0.053 0.947 10 C -0.126 4.126 11 C 0.143 3.857 12 N -0.603 5.603 13 C -0.256 4.256 14 H 0.066 0.934 15 C -0.048 4.048 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.275 1.275 21 C 0.194 3.806 22 C -0.087 4.087 23 C -0.129 4.129 24 C -0.120 4.120 25 N -0.443 5.443 26 C -0.018 4.018 27 C -0.222 4.222 28 C -0.220 4.220 29 C -0.029 4.029 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.003 0.997 40 H 0.249 0.751 41 H -0.016 1.016 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.051 0.949 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.177 0.823 50 H 0.143 0.857 51 H 0.141 0.859 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -9.266 21.740 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.115 0.885 4 C -0.180 4.180 5 C 0.304 3.696 6 O -0.455 6.455 7 N -0.358 5.358 8 C 0.072 3.928 9 H 0.072 0.928 10 C -0.166 4.166 11 C 0.016 3.984 12 N -0.326 5.326 13 C -0.387 4.387 14 H 0.084 0.916 15 C -0.243 4.243 16 N -0.581 5.581 17 Si 0.792 3.208 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.201 1.201 21 C 0.068 3.932 22 C -0.089 4.089 23 C -0.187 4.187 24 C -0.177 4.177 25 N -0.118 5.118 26 C -0.148 4.148 27 C -0.247 4.247 28 C -0.245 4.245 29 C -0.158 4.158 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.021 0.979 40 H 0.058 0.942 41 H 0.002 0.998 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.194 0.806 50 H 0.160 0.840 51 H 0.159 0.841 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.564 -8.294 21.372 23.068 hybrid contribution 0.125 -0.023 -1.317 1.323 sum 2.689 -8.317 20.055 21.877 Atomic orbital electron populations 1.22199 0.93046 1.03209 1.03355 1.21002 0.95768 0.96353 0.81847 0.88544 1.21949 1.04753 1.01055 0.90214 1.20741 0.78559 0.85226 0.85095 1.90700 1.41497 1.26271 1.87045 1.46067 1.56994 1.27864 1.04882 1.20548 0.93666 0.94917 0.83655 0.92838 1.22230 0.96192 1.00985 0.97235 1.20989 0.92681 0.95716 0.88973 1.44274 1.01938 1.78656 1.07695 1.19413 1.10987 1.24290 0.83972 0.91618 1.25748 1.00535 0.97472 1.00579 1.70179 1.29032 1.28184 1.30698 0.85407 0.77261 0.78562 0.79610 1.20439 1.22320 1.20133 1.20616 0.85301 0.93163 0.94165 1.21324 0.94941 0.97727 0.94909 1.21722 0.94711 1.00811 1.01417 1.21666 1.01857 0.93521 1.00687 1.44396 1.39007 1.10444 1.17990 1.22111 1.06415 0.86432 0.99831 1.21163 1.05043 0.99860 0.98623 1.21153 1.07332 0.94273 1.01740 1.22195 1.01493 1.00529 0.91627 0.90405 0.91155 0.92388 0.85919 0.86674 0.75058 0.90851 0.92061 0.92509 0.97912 0.94174 0.99757 0.92021 0.90443 0.92824 0.94096 0.93041 0.94015 0.90856 0.80570 0.83958 0.84099 0.81155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.97 71.98 0.65 -2.19 16 2 C 0.15 2.54 2.67 44.99 0.12 2.66 16 3 H 0.10 1.81 7.88 -2.39 -0.02 1.79 16 4 C -0.14 -1.97 5.17 29.85 0.15 -1.82 16 5 C 0.52 11.38 7.51 87.66 0.66 12.04 16 6 O -0.58 -17.39 13.63 -3.04 -0.04 -17.43 16 7 N -0.71 -15.47 4.29 -442.41 -1.90 -17.37 16 8 C 0.18 5.50 1.57 45.01 0.07 5.57 16 9 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 10 C -0.13 -4.18 5.31 30.67 0.16 -4.02 16 11 C 0.14 5.96 6.52 86.35 0.56 6.52 16 12 N -0.60 -29.29 2.43 -698.92 -1.70 -30.99 16 13 C -0.26 -13.67 9.58 84.03 0.81 -12.86 16 14 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 15 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 16 N -0.93 -54.46 11.20 21.65 0.24 -54.22 16 17 Si 0.96 43.95 29.59 68.60 2.03 45.98 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 21 C 0.19 8.96 3.98 86.36 0.34 9.31 16 22 C -0.09 -2.88 0.56 -52.10 -0.03 -2.90 16 23 C -0.13 -3.63 8.31 71.99 0.60 -3.04 16 24 C -0.12 -3.59 7.83 71.98 0.56 -3.03 16 25 N -0.44 -7.43 2.62 -502.01 -1.31 -8.74 16 26 C -0.02 -0.29 10.45 83.21 0.87 0.58 16 27 C -0.22 -3.87 10.86 22.14 0.24 -3.63 16 28 C -0.22 -3.97 10.86 22.14 0.24 -3.73 16 29 C -0.03 -0.51 11.39 83.21 0.95 0.44 16 30 H 0.08 1.74 5.95 -2.39 -0.01 1.72 16 31 H 0.07 1.04 7.91 -2.38 -0.02 1.02 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 1.22 8.06 -2.38 -0.02 1.20 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.41 6.65 6.66 -92.71 -0.62 6.03 16 36 H 0.07 2.31 6.34 -2.39 -0.02 2.30 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.32 7.94 -2.39 -0.02 2.30 16 39 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.25 14.16 8.31 -92.70 -0.77 13.38 16 41 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16 43 H 0.08 1.65 7.36 -2.39 -0.02 1.63 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.76 5.97 -2.39 -0.01 1.74 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.54 6.58 -2.39 -0.02 1.52 16 49 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 50 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 51 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 52 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -66.88 399.37 4.97 -61.91 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.27 Total: 23.16 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 7.37 Total: -2.31 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -4.67 Total: -111.31 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.04 Total: -17.43 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.88 4.97 -61.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674034659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.757 kcal (2) G-P(sol) polarization free energy of solvation -66.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds