Wall clock time and date at job start Tue Mar 31 2020 17:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.53000 * 109.46922 * 239.99894 * 2 1 3 5 5 C 1.50701 * 109.47205 * 65.00297 * 4 2 1 6 6 O 1.21276 * 119.99887 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00407 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00184 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47618 * 34.99983 * 8 7 5 10 10 C 1.53005 * 109.47225 * 155.00151 * 8 7 5 11 11 N 1.46506 * 109.46583 * 304.99730 * 10 8 7 12 12 C 1.36936 * 119.99629 * 179.97438 * 11 10 8 13 13 H 1.08006 * 120.00343 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99896 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99917 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00192 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47191 * 89.99917 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00586 * 16 14 12 19 19 H 1.48508 * 109.47028 * 330.00072 * 16 14 12 20 20 C 1.52999 * 109.47350 * 274.99917 * 8 7 5 21 21 C 1.53003 * 109.47253 * 59.99753 * 20 8 7 22 22 C 1.52997 * 109.47378 * 179.97438 * 20 8 7 23 23 C 1.53006 * 109.47187 * 300.00147 * 20 8 7 24 24 C 1.50699 * 109.47114 * 120.00155 * 2 1 3 25 25 C 1.38647 * 120.78723 * 239.99565 * 24 2 1 26 26 C 1.38209 * 119.16168 * 179.74448 * 25 24 2 27 27 N 1.31875 * 120.76041 * 0.25720 * 26 25 24 28 28 C 1.31861 * 121.73030 * 0.02562 * 27 26 25 29 29 C 1.38204 * 120.76410 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47272 * 299.99699 * 1 2 3 31 31 H 1.08997 * 109.47030 * 59.99906 * 1 2 3 32 32 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47268 * 184.99995 * 4 2 1 34 34 H 1.09003 * 109.47673 * 304.99944 * 4 2 1 35 35 H 0.97003 * 119.99957 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.47276 * 64.99472 * 10 8 7 37 37 H 1.09002 * 109.47031 * 185.00409 * 10 8 7 38 38 H 0.96996 * 120.00544 * 0.02562 * 11 10 8 39 39 H 0.97007 * 120.00250 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.46685 * 60.00116 * 21 20 8 41 41 H 1.08996 * 109.46871 * 180.02562 * 21 20 8 42 42 H 1.08996 * 109.46896 * 300.00330 * 21 20 8 43 43 H 1.09003 * 109.46938 * 60.00446 * 22 20 8 44 44 H 1.09000 * 109.47119 * 179.97438 * 22 20 8 45 45 H 1.08990 * 109.47525 * 299.99936 * 22 20 8 46 46 H 1.09004 * 109.46996 * 59.99347 * 23 20 8 47 47 H 1.08989 * 109.47469 * 179.97438 * 23 20 8 48 48 H 1.09001 * 109.46794 * 300.00188 * 23 20 8 49 49 H 1.08002 * 120.42293 * 0.02952 * 25 24 2 50 50 H 1.07995 * 119.61831 * 180.23405 * 26 25 24 51 51 H 1.07997 * 119.61902 * 180.02562 * 28 27 26 52 52 H 1.08005 * 120.42170 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9853 -0.3914 -3.7002 8 6 1.5973 0.3650 -4.8933 9 1 1.6276 1.4320 -4.6729 10 6 2.5681 0.0519 -6.0337 11 7 3.9400 0.3179 -5.5939 12 6 4.9867 0.1083 -6.4516 13 1 4.8008 -0.2529 -7.4524 14 6 6.2866 0.3598 -6.0349 15 7 7.2926 0.1588 -6.8594 16 14 6.6081 0.9851 -4.3042 17 1 6.8023 -0.1684 -3.3893 18 1 7.8294 1.8298 -4.3020 19 1 5.4481 1.7909 -3.8456 20 6 0.1786 -0.0298 -5.3084 21 6 -0.7923 0.2832 -4.1680 22 6 -0.2269 0.7606 -6.5541 23 6 0.1359 -1.5276 -5.6178 24 6 2.0323 -0.7104 1.2304 25 6 2.8305 -0.0525 2.1537 26 6 3.2681 -0.7349 3.2731 27 7 2.9390 -1.9974 3.4648 28 6 2.1866 -2.6562 2.6054 29 6 1.7121 -2.0393 1.4633 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7995 -1.2056 34 1 1.6054 -1.7199 -1.2952 35 1 2.4898 -1.2149 -3.7908 36 1 2.4733 -0.9972 -6.3138 37 1 2.3337 0.6801 -6.8931 38 1 4.1070 0.6419 -4.6951 39 1 8.2011 0.3342 -6.5681 40 1 -0.7618 1.3503 -3.9476 41 1 -1.8029 0.0015 -4.4637 42 1 -0.5036 -0.2796 -3.2804 43 1 0.4646 0.5379 -7.3667 44 1 -1.2374 0.4790 -6.8501 45 1 -0.1967 1.8274 -6.3333 46 1 0.4246 -2.0904 -4.7301 47 1 -0.8748 -1.8090 -5.9131 48 1 0.8275 -1.7507 -6.4302 49 1 3.1029 0.9816 2.0025 50 1 3.8870 -0.2284 3.9989 51 1 1.9375 -3.6895 2.7966 52 1 1.0958 -2.5840 0.7633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677262790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:53 Heat of formation + Delta-G solvation = -7.486779 kcal Electronic energy + Delta-G solvation = -29837.710536 eV Core-core repulsion = 26029.909818 eV Total energy + Delta-G solvation = -3807.800718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.71801 -40.10007 -37.86948 -35.70016 -34.63897 -33.35817 -31.53650 -31.38353 -31.07699 -28.65327 -27.78903 -27.21645 -26.49126 -24.58223 -23.71876 -23.48773 -21.55425 -21.06019 -20.02078 -18.71766 -17.82185 -17.37672 -16.54217 -16.35000 -15.86002 -15.81780 -15.70892 -14.86237 -14.45739 -14.26462 -14.24429 -14.10345 -13.78115 -13.70093 -13.46819 -13.27234 -13.11097 -12.81267 -12.65328 -12.28859 -12.11799 -12.03616 -11.91973 -11.65425 -11.59065 -11.49086 -11.44404 -11.20588 -11.00824 -10.91824 -10.77810 -10.60792 -10.35716 -10.05773 -9.81188 -9.69614 -9.66374 -9.52847 -9.38460 -8.96532 -8.73461 -7.30430 -5.83412 -3.19413 0.90327 1.01451 2.75415 3.28731 3.31828 3.35416 3.40332 3.59835 4.22970 4.33058 4.41794 4.52742 4.73122 4.76906 4.86292 4.87798 4.89714 4.93406 4.99873 5.08458 5.23673 5.38542 5.39651 5.44111 5.45556 5.49641 5.55885 5.57628 5.67850 5.70204 5.75530 5.80179 5.81660 5.82842 5.89784 5.94240 6.03003 6.06886 6.15726 6.20867 6.23678 6.32646 6.35982 6.40758 6.47234 6.51122 6.63089 6.82933 7.69511 7.74263 7.92104 8.35019 8.38660 9.14177 9.86396 10.05770 11.34837 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.003934 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.994811 B = 7114.960333 C = 9521.398522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 H 0.091 0.909 4 C -0.138 4.138 5 C 0.514 3.486 6 O -0.538 6.538 7 N -0.713 5.713 8 C 0.145 3.855 9 H 0.087 0.913 10 C 0.146 3.854 11 N -0.755 5.755 12 C -0.246 4.246 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.932 5.932 16 Si 0.880 3.120 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.075 4.075 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.029 4.029 25 C -0.169 4.169 26 C 0.099 3.901 27 N -0.492 5.492 28 C 0.098 3.902 29 C -0.168 4.168 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.135 0.865 50 H 0.155 0.845 51 H 0.154 0.846 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 -4.007 14.367 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 H 0.110 0.890 4 C -0.178 4.178 5 C 0.300 3.700 6 O -0.416 6.416 7 N -0.364 5.364 8 C 0.040 3.960 9 H 0.105 0.895 10 C 0.018 3.982 11 N -0.401 5.401 12 C -0.376 4.376 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.580 5.580 16 Si 0.711 3.289 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.076 4.076 21 C -0.186 4.186 22 C -0.200 4.200 23 C -0.199 4.199 24 C -0.037 4.037 25 C -0.189 4.189 26 C -0.058 4.058 27 N -0.201 5.201 28 C -0.059 4.059 29 C -0.188 4.188 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.238 0.762 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.153 0.847 50 H 0.172 0.828 51 H 0.171 0.829 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.706 -3.753 14.972 22.745 hybrid contribution 0.496 0.450 0.373 0.766 sum -16.210 -3.303 15.345 22.564 Atomic orbital electron populations 1.21958 0.93160 1.01770 1.03554 1.19920 0.97047 0.99389 0.89185 0.89044 1.21764 1.03374 1.00193 0.92469 1.20390 0.79201 0.85797 0.84585 1.90655 1.39882 1.24451 1.86580 1.46043 1.56805 1.27963 1.05552 1.21330 0.92976 0.96847 0.84817 0.89543 1.21086 0.84058 0.99014 0.94019 1.42706 1.01649 1.81385 1.14334 1.19041 0.84796 1.37599 0.96141 0.89141 1.24647 0.95480 1.01331 0.97369 1.69694 0.98555 1.54784 1.34933 0.86611 0.77471 0.78853 0.85995 1.21084 1.21629 1.20383 1.20876 0.94850 0.95949 0.95970 1.21890 0.97164 1.02269 0.97304 1.21897 1.01080 0.99936 0.97070 1.21917 1.01421 0.94887 1.01695 1.20380 0.93976 0.93898 0.95491 1.22140 0.99330 1.01765 0.95688 1.22763 0.96775 0.90397 0.95841 1.67668 1.12435 1.09172 1.30815 1.22749 0.93128 0.99903 0.90111 1.22023 1.02133 0.95267 0.99403 0.92888 0.89593 0.93111 0.88723 0.88793 0.76200 0.94534 0.93939 0.80525 0.92997 0.92028 0.93997 0.92899 0.91785 0.92821 0.92580 0.92933 0.93139 0.91795 0.84729 0.82819 0.82866 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.76 37.16 0.33 -1.10 16 2 C -0.04 -0.37 2.24 -91.77 -0.21 -0.57 16 3 H 0.09 1.04 7.76 -51.93 -0.40 0.63 16 4 C -0.14 -1.42 4.92 -27.88 -0.14 -1.56 16 5 C 0.51 6.75 5.90 -10.98 -0.06 6.68 16 6 O -0.54 -8.23 11.09 5.56 0.06 -8.17 16 7 N -0.71 -9.61 3.64 -53.81 -0.20 -9.81 16 8 C 0.15 2.14 1.69 -67.93 -0.11 2.03 16 9 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 10 C 0.15 2.58 5.10 -4.04 -0.02 2.56 16 11 N -0.75 -17.00 5.24 -59.90 -0.31 -17.32 16 12 C -0.25 -6.73 10.47 -15.06 -0.16 -6.89 16 13 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 14 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 15 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 16 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 20 C -0.07 -0.91 0.62 -154.51 -0.10 -1.01 16 21 C -0.13 -1.57 7.00 37.16 0.26 -1.31 16 22 C -0.14 -1.66 8.12 37.16 0.30 -1.36 16 23 C -0.14 -1.58 7.97 37.16 0.30 -1.29 16 24 C -0.03 -0.29 4.80 -104.32 -0.50 -0.79 16 25 C -0.17 -1.63 9.76 -39.44 -0.39 -2.02 16 26 C 0.10 0.97 11.18 -17.54 -0.20 0.78 16 27 N -0.49 -5.49 10.36 -13.25 -0.14 -5.63 16 28 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 29 C -0.17 -1.49 8.89 -39.44 -0.35 -1.84 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.99 5.95 -51.93 -0.31 0.68 16 32 H 0.05 0.43 7.50 -51.93 -0.39 0.04 16 33 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.09 0.77 7.65 -51.93 -0.40 0.38 16 35 H 0.40 5.15 8.60 -40.82 -0.35 4.80 16 36 H 0.04 0.63 6.17 -51.93 -0.32 0.31 16 37 H 0.04 0.78 6.71 -51.93 -0.35 0.43 16 38 H 0.36 8.16 5.20 -40.82 -0.21 7.95 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.06 0.84 7.53 -51.93 -0.39 0.45 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.66 5.78 -51.93 -0.30 0.36 16 43 H 0.06 0.77 6.55 -51.93 -0.34 0.43 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.56 7.60 -51.93 -0.39 0.17 16 47 H 0.05 0.51 8.14 -51.94 -0.42 0.08 16 48 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 49 H 0.13 1.10 8.01 -52.49 -0.42 0.68 16 50 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 51 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 52 H 0.13 0.92 7.35 -52.48 -0.39 0.54 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -32.47 400.46 -8.48 -40.95 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.66 Total: 11.66 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.34 Total: -6.84 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.13 Total: -60.78 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.06 Total: -8.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.47 -8.48 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677262790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.463 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds