Wall clock time and date at job start Tue Mar 31 2020 17:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.53000 * 109.46922 * 239.99894 * 2 1 3 5 5 C 1.50701 * 109.47205 * 65.00297 * 4 2 1 6 6 O 1.21276 * 119.99887 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00407 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00184 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47618 * 34.99983 * 8 7 5 10 10 C 1.53005 * 109.47225 * 155.00151 * 8 7 5 11 11 N 1.46506 * 109.46583 * 304.99730 * 10 8 7 12 12 C 1.36936 * 119.99629 * 179.97438 * 11 10 8 13 13 H 1.08006 * 120.00343 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99896 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99917 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00192 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47191 * 89.99917 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00586 * 16 14 12 19 19 H 1.48508 * 109.47028 * 330.00072 * 16 14 12 20 20 C 1.52999 * 109.47350 * 274.99917 * 8 7 5 21 21 C 1.53003 * 109.47253 * 59.99753 * 20 8 7 22 22 C 1.52997 * 109.47378 * 179.97438 * 20 8 7 23 23 C 1.53006 * 109.47187 * 300.00147 * 20 8 7 24 24 C 1.50699 * 109.47114 * 120.00155 * 2 1 3 25 25 C 1.38647 * 120.78723 * 239.99565 * 24 2 1 26 26 C 1.38209 * 119.16168 * 179.74448 * 25 24 2 27 27 N 1.31875 * 120.76041 * 0.25720 * 26 25 24 28 28 C 1.31861 * 121.73030 * 0.02562 * 27 26 25 29 29 C 1.38204 * 120.76410 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47272 * 299.99699 * 1 2 3 31 31 H 1.08997 * 109.47030 * 59.99906 * 1 2 3 32 32 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47268 * 184.99995 * 4 2 1 34 34 H 1.09003 * 109.47673 * 304.99944 * 4 2 1 35 35 H 0.97003 * 119.99957 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.47276 * 64.99472 * 10 8 7 37 37 H 1.09002 * 109.47031 * 185.00409 * 10 8 7 38 38 H 0.96996 * 120.00544 * 0.02562 * 11 10 8 39 39 H 0.97007 * 120.00250 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.46685 * 60.00116 * 21 20 8 41 41 H 1.08996 * 109.46871 * 180.02562 * 21 20 8 42 42 H 1.08996 * 109.46896 * 300.00330 * 21 20 8 43 43 H 1.09003 * 109.46938 * 60.00446 * 22 20 8 44 44 H 1.09000 * 109.47119 * 179.97438 * 22 20 8 45 45 H 1.08990 * 109.47525 * 299.99936 * 22 20 8 46 46 H 1.09004 * 109.46996 * 59.99347 * 23 20 8 47 47 H 1.08989 * 109.47469 * 179.97438 * 23 20 8 48 48 H 1.09001 * 109.46794 * 300.00188 * 23 20 8 49 49 H 1.08002 * 120.42293 * 0.02952 * 25 24 2 50 50 H 1.07995 * 119.61831 * 180.23405 * 26 25 24 51 51 H 1.07997 * 119.61902 * 180.02562 * 28 27 26 52 52 H 1.08005 * 120.42170 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9853 -0.3914 -3.7002 8 6 1.5973 0.3650 -4.8933 9 1 1.6276 1.4320 -4.6729 10 6 2.5681 0.0519 -6.0337 11 7 3.9400 0.3179 -5.5939 12 6 4.9867 0.1083 -6.4516 13 1 4.8008 -0.2529 -7.4524 14 6 6.2866 0.3598 -6.0349 15 7 7.2926 0.1588 -6.8594 16 14 6.6081 0.9851 -4.3042 17 1 6.8023 -0.1684 -3.3893 18 1 7.8294 1.8298 -4.3020 19 1 5.4481 1.7909 -3.8456 20 6 0.1786 -0.0298 -5.3084 21 6 -0.7923 0.2832 -4.1680 22 6 -0.2269 0.7606 -6.5541 23 6 0.1359 -1.5276 -5.6178 24 6 2.0323 -0.7104 1.2304 25 6 2.8305 -0.0525 2.1537 26 6 3.2681 -0.7349 3.2731 27 7 2.9390 -1.9974 3.4648 28 6 2.1866 -2.6562 2.6054 29 6 1.7121 -2.0393 1.4633 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7995 -1.2056 34 1 1.6054 -1.7199 -1.2952 35 1 2.4898 -1.2149 -3.7908 36 1 2.4733 -0.9972 -6.3138 37 1 2.3337 0.6801 -6.8931 38 1 4.1070 0.6419 -4.6951 39 1 8.2011 0.3342 -6.5681 40 1 -0.7618 1.3503 -3.9476 41 1 -1.8029 0.0015 -4.4637 42 1 -0.5036 -0.2796 -3.2804 43 1 0.4646 0.5379 -7.3667 44 1 -1.2374 0.4790 -6.8501 45 1 -0.1967 1.8274 -6.3333 46 1 0.4246 -2.0904 -4.7301 47 1 -0.8748 -1.8090 -5.9131 48 1 0.8275 -1.7507 -6.4302 49 1 3.1029 0.9816 2.0025 50 1 3.8870 -0.2284 3.9989 51 1 1.9375 -3.6895 2.7966 52 1 1.0958 -2.5840 0.7633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677262790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:52 Heat of formation + Delta-G solvation = -27.293359 kcal Electronic energy + Delta-G solvation = -29838.569413 eV Core-core repulsion = 26029.909818 eV Total energy + Delta-G solvation = -3808.659595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.61117 -40.99256 -38.94781 -36.55938 -36.31871 -34.59554 -33.33570 -32.20692 -31.86250 -29.94383 -28.82108 -28.13039 -27.54766 -25.60159 -25.02373 -24.32455 -23.09283 -22.02747 -20.95426 -20.10522 -19.37754 -18.34921 -17.40206 -17.22396 -17.04991 -16.85787 -16.42292 -16.40425 -15.85440 -15.47747 -15.10451 -15.03970 -14.80802 -14.78594 -14.48997 -14.45915 -14.30104 -14.14837 -13.73856 -13.41756 -13.32580 -13.09320 -12.98763 -12.78612 -12.74748 -12.56993 -12.40308 -12.36355 -12.24472 -12.17541 -11.94934 -11.84528 -11.75685 -11.59371 -11.28593 -11.00697 -10.68339 -10.46376 -10.37811 -10.06074 -9.85588 -9.30419 -8.04625 -5.37321 0.22750 0.29790 1.32697 1.35930 1.42631 1.73494 2.27216 2.44304 2.88972 3.27468 3.46155 3.53241 3.63081 3.68343 3.81531 3.96633 4.02930 4.04913 4.15468 4.18551 4.23018 4.25729 4.33058 4.43960 4.48589 4.63875 4.67198 4.73043 4.77585 4.85062 4.86860 4.89045 4.91929 4.96619 4.98901 5.07803 5.09278 5.11495 5.15259 5.16923 5.26418 5.33173 5.40466 5.46800 5.50505 5.60265 5.67916 5.76064 5.80785 6.19115 6.64742 7.05249 7.05812 7.35202 7.81596 7.99847 9.16879 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.003934 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.994811 B = 7114.960333 C = 9521.398522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 H 0.074 0.926 4 C -0.132 4.132 5 C 0.512 3.488 6 O -0.561 6.561 7 N -0.714 5.714 8 C 0.157 3.843 9 H 0.062 0.938 10 C 0.146 3.854 11 N -0.756 5.756 12 C -0.229 4.229 13 H 0.062 0.938 14 C -0.057 4.057 15 N -0.981 5.981 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.299 1.299 19 H -0.265 1.265 20 C -0.069 4.069 21 C -0.119 4.119 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.037 4.037 25 C -0.179 4.179 26 C 0.088 3.912 27 N -0.518 5.518 28 C 0.088 3.912 29 C -0.166 4.166 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.409 0.591 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.041 0.959 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.143 0.857 50 H 0.171 0.829 51 H 0.176 0.824 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.477 -5.185 15.931 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.092 0.908 4 C -0.172 4.172 5 C 0.300 3.700 6 O -0.440 6.440 7 N -0.365 5.365 8 C 0.051 3.949 9 H 0.080 0.920 10 C 0.019 3.981 11 N -0.401 5.401 12 C -0.360 4.360 13 H 0.080 0.920 14 C -0.249 4.249 15 N -0.632 5.632 16 Si 0.775 3.225 17 H -0.197 1.197 18 H -0.226 1.226 19 H -0.191 1.191 20 C -0.071 4.071 21 C -0.177 4.177 22 C -0.200 4.200 23 C -0.195 4.195 24 C -0.045 4.045 25 C -0.199 4.199 26 C -0.068 4.068 27 N -0.228 5.228 28 C -0.068 4.068 29 C -0.185 4.185 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.140 0.860 35 H 0.244 0.756 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.197 0.803 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.161 0.839 50 H 0.188 0.812 51 H 0.193 0.807 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.537 -4.943 16.552 25.338 hybrid contribution 0.963 0.818 -0.192 1.278 sum -17.574 -4.125 16.360 24.362 Atomic orbital electron populations 1.21879 0.92816 1.02557 1.02569 1.19803 0.97222 0.98500 0.89358 0.90791 1.21782 1.03503 1.01054 0.90847 1.20868 0.78540 0.85599 0.85002 1.90660 1.40900 1.25568 1.86878 1.46029 1.57059 1.28005 1.05371 1.21074 0.93733 0.95724 0.84325 0.92000 1.21230 0.82277 0.99388 0.95162 1.42698 1.02502 1.81213 1.13732 1.19037 0.86070 1.35415 0.95512 0.91987 1.25374 0.95363 1.02684 1.01457 1.69863 0.98920 1.57163 1.37221 0.85536 0.77087 0.78530 0.81335 1.19682 1.22560 1.19070 1.20831 0.93002 0.97001 0.96231 1.21777 0.97919 1.00945 0.97035 1.21904 1.02037 0.99493 0.96566 1.21882 1.02282 0.93667 1.01707 1.20405 0.94319 0.94445 0.95310 1.22316 0.99462 1.02326 0.95789 1.23074 0.97053 0.90330 0.96368 1.67689 1.13418 1.09849 1.31849 1.23188 0.92658 1.00929 0.90015 1.22245 1.01846 0.94873 0.99548 0.92918 0.91463 0.91402 0.88684 0.86023 0.75585 0.93385 0.94386 0.80329 0.93362 0.93968 0.92338 0.93045 0.92485 0.90910 0.93303 0.92264 0.91497 0.92608 0.83926 0.81215 0.80668 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.76 71.98 0.63 -1.83 16 2 C -0.03 -0.55 2.24 -11.54 -0.03 -0.57 16 3 H 0.07 1.61 7.76 -2.39 -0.02 1.60 16 4 C -0.13 -2.39 4.92 29.85 0.15 -2.24 16 5 C 0.51 12.54 5.90 87.66 0.52 13.06 16 6 O -0.56 -16.65 11.09 -3.02 -0.03 -16.68 16 7 N -0.71 -17.95 3.64 -442.54 -1.61 -19.56 16 8 C 0.16 4.46 1.69 44.99 0.08 4.54 16 9 H 0.06 2.10 7.58 -2.39 -0.02 2.08 16 10 C 0.15 5.04 5.10 86.38 0.44 5.48 16 11 N -0.76 -33.51 5.24 -343.43 -1.80 -35.31 16 12 C -0.23 -12.62 10.47 84.03 0.88 -11.74 16 13 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 14 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 15 N -0.98 -61.83 13.97 21.65 0.30 -61.53 16 16 Si 0.95 45.15 27.73 68.60 1.90 47.05 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 19 H -0.27 -11.93 6.52 99.48 0.65 -11.29 16 20 C -0.07 -1.56 0.62 -52.18 -0.03 -1.60 16 21 C -0.12 -2.67 7.00 71.98 0.50 -2.17 16 22 C -0.14 -3.11 8.12 71.98 0.58 -2.53 16 23 C -0.14 -2.70 7.97 71.98 0.57 -2.13 16 24 C -0.04 -0.64 4.80 -19.67 -0.09 -0.73 16 25 C -0.18 -3.21 9.76 22.36 0.22 -2.99 16 26 C 0.09 1.62 11.18 84.68 0.95 2.57 16 27 N -0.52 -10.79 10.36 -195.85 -2.03 -12.82 16 28 C 0.09 1.46 11.18 84.68 0.95 2.41 16 29 C -0.17 -2.47 8.89 22.36 0.20 -2.27 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.46 5.95 -2.39 -0.01 1.45 16 32 H 0.07 0.93 7.50 -2.39 -0.02 0.91 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.12 1.53 7.65 -2.39 -0.02 1.51 16 35 H 0.41 9.48 8.60 -92.71 -0.80 8.69 16 36 H 0.05 1.60 6.17 -2.39 -0.01 1.59 16 37 H 0.04 1.38 6.71 -2.39 -0.02 1.36 16 38 H 0.36 15.89 5.20 -92.71 -0.48 15.41 16 39 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 40 H 0.04 1.11 7.53 -2.39 -0.02 1.09 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.16 5.78 -2.39 -0.01 1.15 16 43 H 0.06 1.32 6.55 -2.39 -0.02 1.30 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.08 7.60 -2.39 -0.02 1.07 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.05 1.19 6.32 -2.39 -0.02 1.17 16 49 H 0.14 2.20 8.01 -2.91 -0.02 2.17 16 50 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 51 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 52 H 0.16 1.52 7.35 -2.91 -0.02 1.50 16 Total: -1.00 -70.53 400.46 3.29 -67.24 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.42 Total: 37.17 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 6.98 Total: -5.57 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.14 Total: -129.22 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.03 Total: -16.68 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Total: -70.53 3.29 -67.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677262790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.945 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds