Wall clock time and date at job start Tue Mar 31 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47078 * 2 1 4 4 C 1.36936 * 119.99889 * 275.30602 * 3 2 1 5 5 H 1.08003 * 119.99885 * 37.58422 * 4 3 2 6 6 C 1.38809 * 120.00203 * 217.57987 * 4 3 2 7 7 N 1.31619 * 119.99749 * 21.43004 * 6 4 3 8 8 Si 1.86800 * 120.00069 * 201.43824 * 6 4 3 9 9 H 1.48493 * 109.47201 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47004 * 119.99714 * 8 6 4 11 11 H 1.48499 * 109.47009 * 239.99737 * 8 6 4 12 12 C 1.46491 * 119.99808 * 95.31092 * 3 2 1 13 13 C 1.52997 * 109.47402 * 269.99489 * 12 3 2 14 14 N 1.46505 * 109.47461 * 180.02562 * 13 12 3 15 15 C 1.34770 * 119.99918 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00334 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00029 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47571 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47598 * 180.02562 * 18 17 15 20 20 C 1.38307 * 119.96493 * 270.02735 * 19 18 17 21 21 C 1.38258 * 120.15186 * 179.97438 * 20 19 18 22 22 C 1.38131 * 120.07813 * 359.74571 * 21 20 19 23 23 C 1.38893 * 119.91711 * 0.47917 * 22 21 20 24 24 N 1.39676 * 120.07273 * 179.78947 * 23 22 21 25 25 C 1.46495 * 120.00315 * 179.72515 * 24 23 22 26 26 C 1.46501 * 119.99917 * 359.45758 * 24 23 22 27 27 C 1.38084 * 119.96489 * 89.99902 * 19 18 17 28 28 H 1.09005 * 109.47191 * 300.00452 * 1 2 3 29 29 H 1.09002 * 109.47221 * 59.99885 * 1 2 3 30 30 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46907 * 239.99981 * 2 1 3 32 32 H 1.08999 * 109.46722 * 120.00030 * 2 1 3 33 33 H 0.97004 * 119.99500 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47186 * 149.99692 * 12 3 2 35 35 H 1.09004 * 109.47456 * 29.99854 * 12 3 2 36 36 H 1.09002 * 109.46850 * 60.00496 * 13 12 3 37 37 H 1.08996 * 109.47370 * 300.00386 * 13 12 3 38 38 H 0.97000 * 119.99554 * 0.02562 * 14 13 12 39 39 H 1.09002 * 109.46527 * 60.00322 * 17 15 14 40 40 H 1.08996 * 109.47190 * 300.00520 * 17 15 14 41 41 H 1.09000 * 109.46784 * 60.00081 * 18 17 15 42 42 H 1.09004 * 109.47113 * 300.00699 * 18 17 15 43 43 H 1.08003 * 119.92099 * 359.97177 * 20 19 18 44 44 H 1.08005 * 119.96508 * 179.97438 * 21 20 19 45 45 H 1.07990 * 120.04055 * 180.27669 * 22 21 20 46 46 H 1.09006 * 109.46687 * 60.00329 * 25 24 23 47 47 H 1.08993 * 109.47382 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.47235 * 300.00983 * 25 24 23 49 49 H 1.09002 * 109.47358 * 89.99627 * 26 24 23 50 50 H 1.09003 * 109.47053 * 209.99596 * 26 24 23 51 51 H 1.09000 * 109.47341 * 329.99840 * 26 24 23 52 52 H 1.08003 * 120.03127 * 0.02881 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2796 -2.6584 9 1 1.7776 4.2136 -3.3320 10 1 3.2550 5.6022 -2.0014 11 1 4.1766 4.0964 -3.6639 12 6 2.3732 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 7 1.4977 3.3903 3.0996 15 6 0.5651 4.0770 3.7888 16 8 -0.5681 4.1549 3.3638 17 6 0.9301 4.7472 5.0883 18 6 -0.3004 5.4529 5.6615 19 6 0.0648 6.1236 6.9607 20 6 -0.0608 5.4343 8.1531 21 6 0.2736 6.0456 9.3472 22 6 0.7395 7.3460 9.3525 23 6 0.8624 8.0427 8.1573 24 7 1.3289 9.3592 8.1593 25 6 1.4636 10.0906 6.8971 26 6 1.6780 10.0107 9.4242 27 6 0.5250 7.4255 6.9592 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0489 3.4031 -0.7831 34 1 3.1617 2.7640 1.0859 35 1 2.7255 1.2833 1.9721 36 1 0.3542 2.0069 2.0139 37 1 0.7904 3.4876 1.1277 38 1 2.4039 3.3276 3.4397 39 1 1.7184 5.4788 4.9108 40 1 1.2828 3.9979 5.7970 41 1 -1.0889 4.7216 5.8389 42 1 -0.6526 6.2023 4.9526 43 1 -0.4209 4.4160 8.1514 44 1 0.1740 5.5047 10.2767 45 1 1.0048 7.8214 10.2852 46 1 0.4907 10.1568 6.4100 47 1 1.8393 11.0941 7.0970 48 1 2.1613 9.5649 6.2452 49 1 2.7296 9.8304 9.6477 50 1 1.5030 11.0833 9.3408 51 1 1.0613 9.6031 10.2252 52 1 0.6228 7.9632 6.0277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691037739.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:32 Heat of formation + Delta-G solvation = 4.008781 kcal Electronic energy + Delta-G solvation = -27915.062102 eV Core-core repulsion = 24107.759870 eV Total energy + Delta-G solvation = -3807.302233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.96819 -39.17983 -36.76132 -36.27546 -34.05203 -33.67815 -31.88189 -30.67877 -30.06553 -29.39383 -28.42014 -27.37092 -25.05485 -24.72164 -23.86972 -21.90306 -21.55392 -20.42502 -20.27223 -19.73790 -17.51151 -16.91095 -16.28513 -16.17058 -15.66743 -15.39983 -15.39063 -15.29593 -14.90718 -14.36758 -14.12126 -13.87992 -13.72319 -13.56588 -13.22480 -13.11028 -12.96804 -12.79593 -12.51432 -12.38454 -12.37298 -12.11584 -11.96488 -11.90031 -11.55132 -11.49371 -11.12577 -11.01260 -10.84937 -10.78343 -10.62135 -10.48377 -10.07621 -9.98533 -9.84635 -9.81558 -9.43955 -8.82305 -8.55531 -8.41171 -7.50296 -6.62129 -5.83471 -3.42118 1.29563 1.49151 2.85157 3.03784 3.33539 3.42746 3.46776 3.59864 3.81248 4.46343 4.57939 4.66533 4.77193 4.89423 4.93318 5.04328 5.08487 5.11862 5.26271 5.26587 5.29032 5.31114 5.39140 5.40319 5.47830 5.55084 5.57854 5.66197 5.86568 5.92300 6.01197 6.10509 6.14911 6.19102 6.20444 6.39678 6.41417 6.44540 6.52947 6.62471 6.70261 6.74409 6.91986 6.94306 6.99043 7.05281 7.17789 7.27916 7.55648 7.80662 7.99616 8.48232 8.66226 9.14928 9.76863 10.34985 11.16438 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.002160 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.139094 B =12961.672509 C =14328.565951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.722 5.722 15 C 0.505 3.495 16 O -0.551 6.551 17 C -0.133 4.133 18 C -0.065 4.065 19 C -0.032 4.032 20 C -0.173 4.173 21 C -0.072 4.072 22 C -0.204 4.204 23 C 0.212 3.788 24 N -0.641 5.641 25 C 0.096 3.904 26 C 0.095 3.905 27 C -0.189 4.189 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.064 0.936 51 H 0.067 0.933 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 10.681 21.744 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.373 5.373 15 C 0.291 3.709 16 O -0.429 6.429 17 C -0.174 4.174 18 C -0.103 4.103 19 C -0.032 4.032 20 C -0.193 4.193 21 C -0.091 4.091 22 C -0.226 4.226 23 C 0.112 3.888 24 N -0.354 5.354 25 C -0.048 4.048 26 C -0.049 4.049 27 C -0.212 4.212 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.230 0.770 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.494 10.980 21.372 24.445 hybrid contribution 0.483 0.848 -0.438 1.070 sum -4.012 11.828 20.934 24.377 Atomic orbital electron populations 1.22390 0.99910 0.99061 1.01410 1.20879 0.91776 0.87000 0.98869 1.43621 1.76045 1.08303 1.02119 1.19060 1.04686 1.21125 0.93954 0.92061 1.25188 0.94182 1.01275 0.98167 1.70008 1.03184 1.37261 1.42537 0.86335 0.77763 0.82174 0.81195 1.19981 1.21407 1.21596 1.21054 0.94626 0.96934 0.86387 1.22426 1.00944 0.96504 0.82939 1.46168 1.13163 1.53317 1.24610 1.20626 0.85428 0.78914 0.85946 1.90678 1.20641 1.61324 1.70253 1.21630 0.99766 1.00809 0.95154 1.20338 0.97033 0.99854 0.93080 1.19684 0.95475 0.93092 0.94981 1.20846 1.06108 1.00410 0.91946 1.20851 0.96439 0.93997 0.97807 1.20630 1.09692 0.96070 0.96248 1.17794 0.92981 0.84079 0.93985 1.46307 1.71663 1.10995 1.06390 1.21603 1.01282 0.96141 0.85744 1.21634 0.99957 0.97285 0.85979 1.20552 1.08243 0.95958 0.96426 0.93662 0.93118 0.94465 0.93600 0.94744 0.93605 0.88440 0.95357 0.93094 0.91905 0.76965 0.89057 0.88971 0.90111 0.90307 0.86355 0.86313 0.86385 0.92768 0.91019 0.92618 0.93522 0.91704 0.91428 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.21 37.16 0.38 -2.78 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.95 16 3 N -0.58 -14.17 2.43 -173.24 -0.42 -14.59 16 4 C -0.26 -6.97 9.45 -15.06 -0.14 -7.11 16 5 H 0.06 1.67 7.92 -52.48 -0.42 1.26 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -24.79 11.47 55.49 0.64 -24.15 16 8 Si 0.90 21.45 29.60 -169.99 -5.03 16.42 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.14 3.07 5.45 -4.05 -0.02 3.05 16 13 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 14 N -0.72 -12.09 5.56 -60.29 -0.33 -12.43 16 15 C 0.51 8.33 7.83 -10.99 -0.09 8.24 16 16 O -0.55 -11.25 15.98 5.56 0.09 -11.16 16 17 C -0.13 -1.60 5.68 -27.88 -0.16 -1.76 16 18 C -0.07 -0.78 4.63 -27.89 -0.13 -0.91 16 19 C -0.03 -0.35 5.13 -104.66 -0.54 -0.89 16 20 C -0.17 -1.80 9.70 -39.55 -0.38 -2.18 16 21 C -0.07 -0.68 10.04 -39.61 -0.40 -1.08 16 22 C -0.20 -1.96 9.20 -39.38 -0.36 -2.32 16 23 C 0.21 2.21 6.55 -83.79 -0.55 1.66 16 24 N -0.64 -5.54 3.41 -187.55 -0.64 -6.18 16 25 C 0.10 0.68 9.40 59.84 0.56 1.24 16 26 C 0.09 0.57 10.15 59.85 0.61 1.18 16 27 C -0.19 -2.09 8.96 -39.38 -0.35 -2.44 16 28 H 0.04 0.86 6.64 -51.93 -0.34 0.51 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 33 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.10 2.44 5.52 -51.93 -0.29 2.15 16 35 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 36 H 0.05 1.07 6.64 -51.93 -0.34 0.73 16 37 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.40 5.61 8.47 -40.82 -0.35 5.27 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 42 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 45 H 0.12 0.92 6.16 -52.49 -0.32 0.59 16 46 H 0.05 0.39 7.95 -51.93 -0.41 -0.03 16 47 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 48 H 0.06 0.41 7.95 -51.93 -0.41 0.00 16 49 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.29 7.92 -51.93 -0.41 -0.12 16 51 H 0.07 0.37 6.22 -51.93 -0.32 0.05 16 52 H 0.12 1.26 6.74 -52.48 -0.35 0.90 16 LS Contribution 418.59 15.07 6.31 6.31 Total: -1.00 -32.02 418.59 -10.07 -42.09 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.97 Total: 4.64 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.71 Total: -0.95 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.76 Total: -57.35 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.02 -10.07 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691037739.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.101 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds