Wall clock time and date at job start Tue Mar 31 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47078 * 2 1 4 4 C 1.36936 * 119.99889 * 275.30602 * 3 2 1 5 5 H 1.08003 * 119.99885 * 37.58422 * 4 3 2 6 6 C 1.38809 * 120.00203 * 217.57987 * 4 3 2 7 7 N 1.31619 * 119.99749 * 21.43004 * 6 4 3 8 8 Si 1.86800 * 120.00069 * 201.43824 * 6 4 3 9 9 H 1.48493 * 109.47201 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47004 * 119.99714 * 8 6 4 11 11 H 1.48499 * 109.47009 * 239.99737 * 8 6 4 12 12 C 1.46491 * 119.99808 * 95.31092 * 3 2 1 13 13 C 1.52997 * 109.47402 * 269.99489 * 12 3 2 14 14 N 1.46505 * 109.47461 * 180.02562 * 13 12 3 15 15 C 1.34770 * 119.99918 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00334 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00029 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47571 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47598 * 180.02562 * 18 17 15 20 20 C 1.38307 * 119.96493 * 270.02735 * 19 18 17 21 21 C 1.38258 * 120.15186 * 179.97438 * 20 19 18 22 22 C 1.38131 * 120.07813 * 359.74571 * 21 20 19 23 23 C 1.38893 * 119.91711 * 0.47917 * 22 21 20 24 24 N 1.39676 * 120.07273 * 179.78947 * 23 22 21 25 25 C 1.46495 * 120.00315 * 179.72515 * 24 23 22 26 26 C 1.46501 * 119.99917 * 359.45758 * 24 23 22 27 27 C 1.38084 * 119.96489 * 89.99902 * 19 18 17 28 28 H 1.09005 * 109.47191 * 300.00452 * 1 2 3 29 29 H 1.09002 * 109.47221 * 59.99885 * 1 2 3 30 30 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46907 * 239.99981 * 2 1 3 32 32 H 1.08999 * 109.46722 * 120.00030 * 2 1 3 33 33 H 0.97004 * 119.99500 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47186 * 149.99692 * 12 3 2 35 35 H 1.09004 * 109.47456 * 29.99854 * 12 3 2 36 36 H 1.09002 * 109.46850 * 60.00496 * 13 12 3 37 37 H 1.08996 * 109.47370 * 300.00386 * 13 12 3 38 38 H 0.97000 * 119.99554 * 0.02562 * 14 13 12 39 39 H 1.09002 * 109.46527 * 60.00322 * 17 15 14 40 40 H 1.08996 * 109.47190 * 300.00520 * 17 15 14 41 41 H 1.09000 * 109.46784 * 60.00081 * 18 17 15 42 42 H 1.09004 * 109.47113 * 300.00699 * 18 17 15 43 43 H 1.08003 * 119.92099 * 359.97177 * 20 19 18 44 44 H 1.08005 * 119.96508 * 179.97438 * 21 20 19 45 45 H 1.07990 * 120.04055 * 180.27669 * 22 21 20 46 46 H 1.09006 * 109.46687 * 60.00329 * 25 24 23 47 47 H 1.08993 * 109.47382 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.47235 * 300.00983 * 25 24 23 49 49 H 1.09002 * 109.47358 * 89.99627 * 26 24 23 50 50 H 1.09003 * 109.47053 * 209.99596 * 26 24 23 51 51 H 1.09000 * 109.47341 * 329.99840 * 26 24 23 52 52 H 1.08003 * 120.03127 * 0.02881 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2796 -2.6584 9 1 1.7776 4.2136 -3.3320 10 1 3.2550 5.6022 -2.0014 11 1 4.1766 4.0964 -3.6639 12 6 2.3732 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 7 1.4977 3.3903 3.0996 15 6 0.5651 4.0770 3.7888 16 8 -0.5681 4.1549 3.3638 17 6 0.9301 4.7472 5.0883 18 6 -0.3004 5.4529 5.6615 19 6 0.0648 6.1236 6.9607 20 6 -0.0608 5.4343 8.1531 21 6 0.2736 6.0456 9.3472 22 6 0.7395 7.3460 9.3525 23 6 0.8624 8.0427 8.1573 24 7 1.3289 9.3592 8.1593 25 6 1.4636 10.0906 6.8971 26 6 1.6780 10.0107 9.4242 27 6 0.5250 7.4255 6.9592 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0489 3.4031 -0.7831 34 1 3.1617 2.7640 1.0859 35 1 2.7255 1.2833 1.9721 36 1 0.3542 2.0069 2.0139 37 1 0.7904 3.4876 1.1277 38 1 2.4039 3.3276 3.4397 39 1 1.7184 5.4788 4.9108 40 1 1.2828 3.9979 5.7970 41 1 -1.0889 4.7216 5.8389 42 1 -0.6526 6.2023 4.9526 43 1 -0.4209 4.4160 8.1514 44 1 0.1740 5.5047 10.2767 45 1 1.0048 7.8214 10.2852 46 1 0.4907 10.1568 6.4100 47 1 1.8393 11.0941 7.0970 48 1 2.1613 9.5649 6.2452 49 1 2.7296 9.8304 9.6477 50 1 1.5030 11.0833 9.3408 51 1 1.0613 9.6031 10.2252 52 1 0.6228 7.9632 6.0277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691037739.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:31 Heat of formation + Delta-G solvation = -13.565920 kcal Electronic energy + Delta-G solvation = -27915.824198 eV Core-core repulsion = 24107.759870 eV Total energy + Delta-G solvation = -3808.064329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.91013 -40.36543 -38.13213 -37.39655 -35.59592 -34.62331 -33.83636 -31.68865 -31.16322 -30.54336 -29.38309 -28.72666 -26.32959 -25.67190 -25.21841 -23.30632 -22.48546 -22.14208 -21.37854 -20.88636 -18.75303 -18.22020 -17.67975 -17.13152 -16.93966 -16.75361 -16.43683 -16.36358 -15.92404 -15.80715 -15.45554 -15.19797 -14.93778 -14.69837 -14.45551 -14.13048 -14.01050 -13.89364 -13.66351 -13.56752 -13.46869 -13.22991 -13.03156 -13.01384 -12.79156 -12.68468 -12.65379 -12.36544 -12.32685 -12.29723 -12.03275 -11.91461 -11.67013 -11.64130 -11.50491 -10.90699 -10.63349 -10.55445 -9.98836 -9.62331 -8.60257 -8.17680 -7.86475 -5.49307 0.52387 0.73956 1.41722 1.46348 1.55769 1.69638 2.25030 2.29478 2.50726 2.98939 3.21077 3.64522 3.82928 3.97154 4.04184 4.15025 4.22191 4.24636 4.31457 4.36551 4.43465 4.47235 4.48395 4.51502 4.60832 4.66993 4.68823 4.77194 4.78355 4.81405 4.82809 4.84646 4.87671 4.92043 5.07489 5.08517 5.11986 5.21110 5.24377 5.28598 5.42008 5.47530 5.56321 5.66426 5.67860 5.75270 5.84995 6.01498 6.38143 6.44637 6.59121 6.65535 7.14237 7.32653 7.82469 8.34624 9.09338 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.002160 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.139094 B =12961.672509 C =14328.565951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.269 4.269 5 H 0.051 0.949 6 C -0.030 4.030 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.286 1.286 12 C 0.145 3.855 13 C 0.119 3.881 14 N -0.716 5.716 15 C 0.504 3.496 16 O -0.593 6.593 17 C -0.119 4.119 18 C -0.058 4.058 19 C -0.040 4.040 20 C -0.184 4.184 21 C -0.073 4.073 22 C -0.209 4.209 23 C 0.202 3.798 24 N -0.647 5.647 25 C 0.092 3.908 26 C 0.090 3.910 27 C -0.206 4.206 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.027 0.973 38 H 0.412 0.588 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.142 0.858 45 H 0.137 0.863 46 H 0.049 0.951 47 H 0.093 0.907 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.081 0.919 51 H 0.072 0.928 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 11.065 23.791 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.399 4.399 5 H 0.069 0.931 6 C -0.228 4.228 7 N -0.554 5.554 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.213 1.213 12 C 0.018 3.982 13 C -0.007 4.007 14 N -0.368 5.368 15 C 0.292 3.708 16 O -0.474 6.474 17 C -0.159 4.159 18 C -0.096 4.096 19 C -0.040 4.040 20 C -0.204 4.204 21 C -0.091 4.091 22 C -0.231 4.231 23 C 0.099 3.901 24 N -0.359 5.359 25 C -0.051 4.051 26 C -0.053 4.053 27 C -0.228 4.228 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.160 0.840 45 H 0.154 0.846 46 H 0.068 0.932 47 H 0.111 0.889 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.100 0.900 51 H 0.091 0.909 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.195 11.368 23.445 26.392 hybrid contribution 0.379 0.725 -1.022 1.309 sum -3.816 12.093 22.424 25.761 Atomic orbital electron populations 1.22216 0.98009 1.00854 1.00334 1.21017 0.93163 0.85457 0.99299 1.43863 1.76382 1.09663 1.02026 1.19183 1.04304 1.21702 0.94721 0.93121 1.25767 0.94036 1.02899 1.00095 1.70092 1.03560 1.37899 1.43836 0.85486 0.77607 0.79747 0.79273 1.19869 1.21513 1.21272 1.20925 0.94404 0.96744 0.86157 1.21888 0.99800 0.95283 0.83775 1.46034 1.14206 1.53136 1.23383 1.21406 0.84505 0.78002 0.86858 1.90661 1.22500 1.62692 1.71522 1.21605 1.00150 1.01340 0.92792 1.20219 0.96776 0.99237 0.93405 1.19595 0.96394 0.93334 0.94713 1.21018 1.06442 1.00967 0.92005 1.21152 0.95472 0.94084 0.98410 1.20916 1.09266 0.96243 0.96721 1.18001 0.92974 0.85026 0.94052 1.46561 1.71114 1.10589 1.07644 1.21682 1.00994 0.97044 0.85372 1.21800 1.00283 0.98159 0.85036 1.20614 1.09192 0.96167 0.96861 0.94096 0.94754 0.91191 0.94454 0.92955 0.93700 0.90902 0.93677 0.93494 0.95496 0.75186 0.87483 0.86352 0.90888 0.91930 0.85471 0.83979 0.84571 0.93241 0.88870 0.93268 0.93071 0.90036 0.90907 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 10.21 71.98 0.73 -4.90 16 2 C 0.14 5.63 6.44 86.38 0.56 6.19 16 3 N -0.60 -29.32 2.43 -702.02 -1.71 -31.02 16 4 C -0.27 -14.68 9.45 84.03 0.79 -13.89 16 5 H 0.05 2.82 7.92 -2.91 -0.02 2.80 16 6 C -0.03 -1.64 4.95 84.86 0.42 -1.22 16 7 N -0.91 -51.23 11.47 21.65 0.25 -50.98 16 8 Si 0.95 44.58 29.60 68.60 2.03 46.61 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.14 6.47 5.45 86.38 0.47 6.94 16 13 C 0.12 4.93 6.00 86.38 0.52 5.45 16 14 N -0.72 -23.63 5.56 -463.06 -2.57 -26.20 16 15 C 0.50 16.44 7.83 87.66 0.69 17.13 16 16 O -0.59 -24.60 15.98 -3.03 -0.05 -24.65 16 17 C -0.12 -2.71 5.68 29.85 0.17 -2.54 16 18 C -0.06 -1.39 4.63 29.85 0.14 -1.25 16 19 C -0.04 -0.86 5.13 -19.89 -0.10 -0.96 16 20 C -0.18 -3.55 9.70 22.29 0.22 -3.33 16 21 C -0.07 -1.22 10.04 22.25 0.22 -0.99 16 22 C -0.21 -3.60 9.20 22.40 0.21 -3.40 16 23 C 0.20 3.95 6.55 38.21 0.25 4.20 16 24 N -0.65 -10.25 3.41 -747.29 -2.55 -12.79 16 25 C 0.09 1.22 9.40 127.77 1.20 2.42 16 26 C 0.09 0.89 10.15 127.77 1.30 2.18 16 27 C -0.21 -4.45 8.96 22.40 0.20 -4.24 16 28 H 0.04 1.51 6.64 -2.38 -0.02 1.49 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 33 H 0.25 13.73 8.31 -92.71 -0.77 12.95 16 34 H 0.07 3.69 5.52 -2.39 -0.01 3.67 16 35 H 0.04 1.84 7.86 -2.38 -0.02 1.82 16 36 H 0.05 1.98 6.64 -2.39 -0.02 1.96 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.41 11.14 8.47 -92.71 -0.79 10.36 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.07 1.83 8.04 -2.39 -0.02 1.81 16 42 H 0.06 1.67 8.04 -2.38 -0.02 1.65 16 43 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.14 1.76 6.16 -2.92 -0.02 1.74 16 46 H 0.05 0.69 7.95 -2.38 -0.02 0.67 16 47 H 0.09 0.79 7.79 -2.39 -0.02 0.77 16 48 H 0.05 0.71 7.95 -2.39 -0.02 0.69 16 49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.08 0.53 7.92 -2.39 -0.02 0.51 16 51 H 0.07 0.64 6.22 -2.39 -0.01 0.62 16 52 H 0.12 2.49 6.74 -2.91 -0.02 2.47 16 Total: -1.00 -69.41 418.59 3.49 -65.92 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.11 Total: 25.34 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 7.98 Total: 7.78 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -6.58 Total: -121.00 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.41 3.49 -65.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691037739.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.353 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds