Wall clock time and date at job start Tue Mar 31 2020 18:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.46969 * 2 1 4 4 C 1.35540 * 125.67391 * 268.46503 * 3 2 1 5 5 C 1.35452 * 108.86929 * 179.97438 * 4 3 2 6 6 C 1.39839 * 107.86637 * 359.74054 * 5 4 3 7 7 C 1.37653 * 125.68218 * 88.45001 * 3 2 1 8 8 C 1.46676 * 126.23099 * 0.02562 * 7 3 2 9 9 O 1.21693 * 119.99949 * 336.85271 * 8 7 3 10 10 N 1.34776 * 120.00102 * 156.85487 * 8 7 3 11 11 C 1.46924 * 120.62873 * 359.39971 * 10 8 7 12 12 C 1.53193 * 108.77835 * 233.58853 * 11 10 8 13 13 C 1.53035 * 109.31299 * 305.37078 * 12 11 10 14 14 C 1.53353 * 109.61262 * 61.36884 * 13 12 11 15 15 H 1.08995 * 109.47327 * 58.55009 * 14 13 12 16 16 C 1.52998 * 109.68482 * 178.75056 * 14 13 12 17 17 C 1.46925 * 120.63514 * 179.38176 * 10 8 7 18 18 H 1.08996 * 109.58874 * 246.20071 * 17 10 8 19 19 C 1.53003 * 109.58374 * 6.48166 * 17 10 8 20 20 C 1.53001 * 109.47340 * 67.24120 * 19 17 10 21 21 N 1.46499 * 109.47067 * 185.49389 * 20 19 17 22 22 C 1.36942 * 119.99559 * 180.02562 * 21 20 19 23 23 H 1.07987 * 120.00396 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99320 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00437 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99409 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47436 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47156 * 119.99664 * 26 24 22 29 29 H 1.48503 * 109.47119 * 239.99332 * 26 24 22 30 30 H 1.09000 * 109.46851 * 65.01064 * 1 2 3 31 31 H 1.08992 * 109.47174 * 185.01159 * 1 2 3 32 32 H 1.08998 * 109.46906 * 305.00809 * 1 2 3 33 33 H 1.08993 * 109.47195 * 239.99462 * 2 1 3 34 34 H 1.09003 * 109.46978 * 119.99640 * 2 1 3 35 35 H 1.07993 * 125.56689 * 359.94712 * 4 3 2 36 36 H 1.07995 * 126.06909 * 180.02562 * 5 4 3 37 37 H 1.07999 * 126.45821 * 180.30131 * 6 5 4 38 38 H 1.09007 * 109.58891 * 353.37999 * 11 10 8 39 39 H 1.08999 * 109.58862 * 113.66175 * 11 10 8 40 40 H 1.09003 * 109.49456 * 65.31984 * 12 11 10 41 41 H 1.08994 * 109.50020 * 185.41016 * 12 11 10 42 42 H 1.09002 * 109.46322 * 181.38448 * 13 12 11 43 43 H 1.09004 * 109.45890 * 301.35473 * 13 12 11 44 44 H 1.09001 * 109.46749 * 179.75186 * 16 14 13 45 45 H 1.08995 * 109.47122 * 299.74859 * 16 14 13 46 46 H 1.08995 * 109.47120 * 59.75408 * 16 14 13 47 47 H 1.09001 * 109.47432 * 187.24073 * 19 17 10 48 48 H 1.09003 * 109.47080 * 307.23880 * 19 17 10 49 49 H 1.09003 * 109.46845 * 305.49129 * 20 19 17 50 50 H 1.09000 * 109.47279 * 65.48860 * 20 19 17 51 51 H 0.96995 * 120.00060 * 359.97438 * 21 20 19 52 52 H 0.97000 * 120.00178 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3096 2.1166 -1.1007 5 6 2.7314 3.3428 -0.7092 6 6 2.6987 3.3818 0.6882 7 6 2.2574 2.1483 1.1177 8 6 2.0706 1.7313 2.5115 9 8 1.3035 0.8250 2.7778 10 7 2.7485 2.3520 3.4972 11 6 3.6879 3.4391 3.1901 12 6 5.0452 3.1107 3.8199 13 6 4.8582 2.8452 5.3154 14 6 3.9301 1.6404 5.5123 15 1 4.3580 0.7677 5.0189 16 6 3.7669 1.3543 7.0064 17 6 2.5618 1.9548 4.8994 18 1 2.0930 2.7697 5.4507 19 6 1.6722 0.7118 4.9662 20 6 2.4134 -0.4794 4.3556 21 7 1.5163 -1.6362 4.2997 22 6 1.9634 -2.8252 3.7880 23 1 2.9770 -2.9099 3.4254 24 6 1.1131 -3.9212 3.7346 25 7 -0.1225 -3.8178 4.1761 26 14 1.7227 -5.5428 3.0360 27 1 3.1379 -5.3977 2.6103 28 1 1.6239 -6.5982 4.0761 29 1 0.8906 -5.9217 1.8658 30 1 -0.3633 0.4341 -0.9315 31 1 -0.3633 -1.0237 0.0898 32 1 -0.3633 0.5896 0.8417 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.2204 1.7797 -2.1228 36 1 3.0343 4.1490 -1.3608 37 1 2.9701 4.2197 1.3134 38 1 3.7992 3.5317 2.1097 39 1 3.3097 4.3757 3.5999 40 1 5.4628 2.2242 3.3425 41 1 5.7237 3.9524 3.6818 42 1 5.8260 2.6354 5.7708 43 1 4.4174 3.7232 5.7877 44 1 3.1033 0.5003 7.1423 45 1 4.7407 1.1307 7.4420 46 1 3.3403 2.2279 7.4991 47 1 1.4294 0.4941 6.0062 48 1 0.7531 0.8924 4.4086 49 1 2.7417 -0.2251 3.3477 50 1 3.2806 -0.7214 4.9699 51 1 0.6060 -1.5602 4.6257 52 1 -0.7167 -4.5835 4.1384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691738423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:34 Heat of formation + Delta-G solvation = 50.819180 kcal Electronic energy + Delta-G solvation = -31510.447978 eV Core-core repulsion = 27705.175597 eV Total energy + Delta-G solvation = -3805.272381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61222 -41.22005 -38.46507 -36.86620 -35.54737 -34.68227 -33.92475 -32.59643 -30.75536 -30.28123 -29.46204 -27.38115 -26.69762 -25.10006 -24.49069 -23.65142 -22.86790 -22.44330 -21.44050 -20.41891 -19.70144 -19.03186 -18.01310 -17.23689 -16.92008 -16.76973 -16.40467 -16.02865 -15.69034 -15.51383 -15.40522 -15.09665 -14.93239 -14.55952 -14.52957 -14.36589 -14.22609 -13.73181 -13.56142 -13.33797 -13.25443 -13.09939 -13.00554 -12.95448 -12.89318 -12.84580 -12.43302 -12.32813 -12.22566 -12.13809 -12.06116 -11.90592 -11.64900 -11.45591 -11.29148 -11.10567 -10.84533 -9.89817 -9.58605 -9.41395 -9.01691 -8.82674 -7.92321 -5.17933 0.67751 1.40020 1.42120 1.51885 1.67814 1.93164 2.31333 2.48141 2.54600 3.39432 3.56691 3.77535 3.81424 3.89984 3.94314 4.10307 4.12863 4.15935 4.22323 4.29741 4.33390 4.40852 4.47099 4.50971 4.58235 4.63447 4.65965 4.71019 4.76523 4.86015 4.88768 4.89197 4.94895 4.95609 5.05583 5.13245 5.15625 5.22006 5.27230 5.29326 5.32379 5.38082 5.43388 5.46254 5.53358 5.58438 5.85223 5.97985 6.13806 6.29662 6.39395 6.58310 7.34045 7.41181 8.17168 8.41720 9.32293 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.005420 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.375126 B = 5164.757016 C = 7462.838780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.105 3.895 3 N -0.414 5.414 4 C 0.006 3.994 5 C -0.210 4.210 6 C -0.157 4.157 7 C -0.075 4.075 8 C 0.554 3.446 9 O -0.535 6.535 10 N -0.594 5.594 11 C 0.065 3.935 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.105 4.105 15 H 0.049 0.951 16 C -0.141 4.141 17 C 0.168 3.832 18 H 0.089 0.911 19 C -0.119 4.119 20 C 0.189 3.811 21 N -0.732 5.732 22 C -0.230 4.230 23 H 0.061 0.939 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.969 3.031 27 H -0.270 1.270 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.192 0.808 36 H 0.170 0.830 37 H 0.183 0.817 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.013 0.987 50 H -0.011 1.011 51 H 0.368 0.632 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.686 22.358 -6.584 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.016 4.016 3 N -0.088 5.088 4 C -0.128 4.128 5 C -0.233 4.233 6 C -0.182 4.182 7 C -0.189 4.189 8 C 0.344 3.656 9 O -0.414 6.414 10 N -0.328 5.328 11 C -0.055 4.055 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.124 4.124 15 H 0.067 0.933 16 C -0.198 4.198 17 C 0.065 3.935 18 H 0.106 0.894 19 C -0.157 4.157 20 C 0.063 3.937 21 N -0.372 5.372 22 C -0.363 4.363 23 H 0.079 0.921 24 C -0.268 4.268 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.195 1.195 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.209 0.791 36 H 0.187 0.813 37 H 0.199 0.801 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.031 0.969 50 H 0.007 0.993 51 H 0.198 0.802 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.301 21.398 -6.485 24.618 hybrid contribution -0.490 -1.705 0.041 1.774 sum 9.811 19.693 -6.444 22.926 Atomic orbital electron populations 1.21861 0.93985 1.02399 1.01976 1.21801 0.96068 0.79834 1.03890 1.44237 1.47222 1.11642 1.05675 1.22614 1.05102 0.92944 0.92158 1.21189 1.09341 0.97930 0.94879 1.22007 1.04156 0.95841 0.96213 1.20361 1.16058 0.94932 0.87529 1.17547 0.81536 0.81837 0.84635 1.91043 1.37865 1.29600 1.82884 1.47731 1.42758 1.36854 1.05416 1.23048 0.88493 0.89040 1.04938 1.21905 0.96939 1.02400 0.95568 1.21628 0.99264 0.97077 0.96533 1.21634 0.95054 0.99102 0.96611 0.93296 1.21750 1.02048 1.01687 0.94349 1.21227 0.95635 0.95878 0.80791 0.89356 1.22170 1.00595 0.94055 0.98849 1.20740 0.91022 0.86281 0.95641 1.42416 1.12540 1.07870 1.74420 1.19523 0.96017 0.89416 1.31312 0.92105 1.25474 0.96244 1.01398 1.03718 1.69849 1.06774 1.30699 1.54881 0.85133 0.77550 0.80058 0.77453 1.19493 1.21809 1.21747 0.90377 0.91957 0.94138 0.87048 0.92080 0.79058 0.81256 0.80066 0.85547 0.88966 0.93795 0.87686 0.90920 0.89962 0.94494 0.91581 0.90756 0.93572 0.90092 0.96896 0.99330 0.80161 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 10.15 71.98 0.73 -3.95 16 2 C 0.11 3.36 6.10 86.38 0.53 3.89 16 3 N -0.41 -11.89 2.76 -511.03 -1.41 -13.30 16 4 C 0.01 0.13 11.38 83.48 0.95 1.08 16 5 C -0.21 -3.91 10.81 22.01 0.24 -3.68 16 6 C -0.16 -3.37 8.62 22.57 0.19 -3.17 16 7 C -0.08 -2.25 6.58 40.35 0.27 -1.98 16 8 C 0.55 19.31 6.30 86.45 0.54 19.85 16 9 O -0.53 -23.42 8.21 -4.32 -0.04 -23.45 16 10 N -0.59 -16.47 2.93 -799.70 -2.35 -18.81 16 11 C 0.07 1.17 5.40 86.36 0.47 1.63 16 12 C -0.13 -2.12 6.08 30.67 0.19 -1.94 16 13 C -0.11 -1.86 5.18 30.72 0.16 -1.70 16 14 C -0.10 -2.66 1.96 -10.61 -0.02 -2.68 16 15 H 0.05 1.58 6.14 -2.39 -0.01 1.57 16 16 C -0.14 -3.33 8.98 71.98 0.65 -2.68 16 17 C 0.17 4.83 2.66 44.98 0.12 4.95 16 18 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 19 C -0.12 -4.70 4.17 30.60 0.13 -4.57 16 20 C 0.19 9.01 4.31 86.38 0.37 9.39 16 21 N -0.73 -42.41 5.57 -343.45 -1.91 -44.33 16 22 C -0.23 -14.18 9.99 84.03 0.84 -13.34 16 23 H 0.06 3.69 7.83 -2.92 -0.02 3.66 16 24 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 25 N -0.97 -63.50 13.06 21.65 0.28 -63.22 16 26 Si 0.97 49.07 29.55 68.60 2.03 51.09 16 27 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 29 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.04 1.54 7.51 -2.39 -0.02 1.53 16 33 H 0.11 2.81 8.13 -2.39 -0.02 2.79 16 34 H 0.06 2.56 7.06 -2.39 -0.02 2.54 16 35 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.18 2.76 5.55 -2.91 -0.02 2.75 16 38 H 0.13 2.14 3.19 -2.61 -0.01 2.13 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.04 1.08 6.78 -2.39 -0.02 1.06 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.05 1.81 6.99 -2.39 -0.02 1.79 16 48 H 0.08 3.66 5.69 -25.57 -0.15 3.51 16 49 H 0.01 0.67 5.28 -2.39 -0.01 0.66 16 50 H -0.01 -0.53 6.56 -2.39 -0.02 -0.54 16 51 H 0.37 22.95 7.67 -92.71 -0.71 22.24 16 52 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -78.86 387.80 3.49 -75.37 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: 0.08 Total: 39.79 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 6.81 Total: -3.15 kcal Atomic # 7 Polarization: -134.27 SS G_CDS: -5.39 Total: -139.65 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.09 kcal Total: -78.86 3.49 -75.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691738423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.185 kcal (2) G-P(sol) polarization free energy of solvation -78.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds