Wall clock time and date at job start Tue Mar 31 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.46889 * 2 1 4 4 C 1.35541 * 125.67656 * 267.61528 * 3 2 1 5 5 C 1.35448 * 108.86966 * 180.30524 * 4 3 2 6 6 C 1.39837 * 107.86767 * 359.73485 * 5 4 3 7 7 C 1.37651 * 125.68208 * 87.46400 * 3 2 1 8 8 C 1.46678 * 126.22822 * 359.96285 * 7 3 2 9 9 O 1.21694 * 120.00323 * 333.70093 * 8 7 3 10 10 N 1.34777 * 119.99902 * 153.69904 * 8 7 3 11 11 C 1.46926 * 120.63082 * 358.76913 * 10 8 7 12 12 C 1.53192 * 108.77390 * 233.62973 * 11 10 8 13 13 C 1.53041 * 109.31046 * 305.36047 * 12 11 10 14 14 C 1.53042 * 109.54027 * 61.36882 * 13 12 11 15 15 H 1.08991 * 109.49836 * 178.68504 * 14 13 12 16 16 C 1.52998 * 109.49508 * 58.58365 * 14 13 12 17 17 C 1.46926 * 120.63335 * 178.78282 * 10 8 7 18 18 H 1.08992 * 109.71005 * 246.23205 * 17 10 8 19 19 C 1.53007 * 109.58437 * 6.59042 * 17 10 8 20 20 C 1.52997 * 109.46943 * 178.38841 * 19 17 10 21 21 N 1.46501 * 109.47097 * 174.89202 * 20 19 17 22 22 C 1.36940 * 120.00204 * 179.97438 * 21 20 19 23 23 H 1.07994 * 119.99603 * 359.97438 * 22 21 20 24 24 C 1.38803 * 119.99873 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00366 * 359.97438 * 24 22 21 26 26 Si 1.86810 * 119.99971 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46872 * 89.99970 * 26 24 22 28 28 H 1.48497 * 109.46984 * 209.99970 * 26 24 22 29 29 H 1.48497 * 109.46829 * 330.00020 * 26 24 22 30 30 H 1.09004 * 109.47320 * 305.01609 * 1 2 3 31 31 H 1.08993 * 109.47295 * 65.02022 * 1 2 3 32 32 H 1.09007 * 109.46853 * 185.01855 * 1 2 3 33 33 H 1.08999 * 109.47389 * 239.99412 * 2 1 3 34 34 H 1.09004 * 109.47546 * 119.99525 * 2 1 3 35 35 H 1.08000 * 125.56157 * 0.07786 * 4 3 2 36 36 H 1.07998 * 126.06530 * 179.76837 * 5 4 3 37 37 H 1.07999 * 126.45754 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.59147 * 113.84148 * 11 10 8 39 39 H 1.08998 * 109.70189 * 353.48443 * 11 10 8 40 40 H 1.09002 * 109.50081 * 185.41394 * 12 11 10 41 41 H 1.08997 * 109.52941 * 65.32973 * 12 11 10 42 42 H 1.09001 * 109.46059 * 301.34340 * 13 12 11 43 43 H 1.09006 * 109.44683 * 181.37813 * 13 12 11 44 44 H 1.09002 * 109.47093 * 300.16070 * 16 14 13 45 45 H 1.08997 * 109.47538 * 60.16304 * 16 14 13 46 46 H 1.09000 * 109.46870 * 180.16828 * 16 14 13 47 47 H 1.08993 * 109.47103 * 58.38364 * 19 17 10 48 48 H 1.09001 * 109.46566 * 298.38120 * 19 17 10 49 49 H 1.09000 * 109.47226 * 54.89160 * 20 19 17 50 50 H 1.09000 * 109.46914 * 294.89015 * 20 19 17 51 51 H 0.96999 * 119.99805 * 359.97438 * 21 20 19 52 52 H 0.97004 * 120.00412 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3249 2.1113 -1.1001 5 6 2.7481 3.3369 -0.7085 6 6 2.7003 3.3813 0.6884 7 6 2.2392 2.1547 1.1170 8 6 2.0285 1.7461 2.5099 9 8 1.2140 0.8814 2.7738 10 7 2.7371 2.3284 3.4975 11 6 3.7432 3.3547 3.1921 12 6 5.0741 2.9458 3.8311 13 6 4.8627 2.6982 5.3265 14 6 3.8630 1.5557 5.5198 15 1 3.7307 1.3644 6.5846 16 6 4.3915 0.2936 4.8352 17 6 2.5184 1.9488 4.8999 18 1 2.0961 2.7915 5.4472 19 6 1.5565 0.7607 4.9656 20 6 1.3620 0.3421 6.4243 21 7 0.3494 -0.7140 6.4984 22 6 0.0064 -1.2499 7.7110 23 1 0.4827 -0.8943 8.6126 24 6 -0.9526 -2.2510 7.7811 25 7 -1.5327 -2.6848 6.6821 26 14 -1.4200 -2.9825 9.4352 27 1 -2.5442 -2.2078 10.0191 28 1 -1.8358 -4.3962 9.2514 29 1 -0.2515 -2.9251 10.3497 30 1 -0.3634 0.5897 0.8417 31 1 -0.3633 0.4339 -0.9315 32 1 -0.3633 -1.0238 0.0899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.2481 1.7700 -2.1219 36 1 3.0656 4.1379 -1.3596 37 1 2.9735 4.2185 1.3136 38 1 3.4221 4.3137 3.5987 39 1 3.8667 3.4385 2.1124 40 1 5.8038 3.7439 3.6942 41 1 5.4398 2.0338 3.3594 42 1 4.4743 3.6035 5.7931 43 1 5.8133 2.4309 5.7880 44 1 4.5248 0.4863 3.7707 45 1 5.3482 0.0143 5.2765 46 1 3.6778 -0.5191 4.9706 47 1 1.9708 -0.0739 4.4002 48 1 0.5954 1.0474 4.5387 49 1 1.0337 1.2018 7.0083 50 1 2.3052 -0.0301 6.8242 51 1 -0.0781 -1.0337 5.6885 52 1 -2.2032 -3.3841 6.7311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691738424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:37 Heat of formation + Delta-G solvation = 30.393497 kcal Electronic energy + Delta-G solvation = -30665.778346 eV Core-core repulsion = 26859.620241 eV Total energy + Delta-G solvation = -3806.158106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.60378 -41.22154 -38.61732 -37.03367 -35.53221 -34.65164 -34.06006 -32.59328 -30.53220 -30.30523 -29.63521 -27.70383 -26.59668 -25.31743 -24.48076 -24.10304 -22.83966 -22.33177 -21.33381 -20.26329 -19.52338 -19.14425 -18.06789 -17.27037 -16.86140 -16.76658 -16.44033 -16.29277 -15.68159 -15.50409 -15.30872 -15.07023 -14.98889 -14.81838 -14.63299 -14.51055 -14.24979 -13.97948 -13.61590 -13.40982 -13.24212 -13.11528 -13.08518 -12.93431 -12.88977 -12.84703 -12.50127 -12.34755 -12.26620 -12.14917 -12.11161 -11.82089 -11.71368 -11.65766 -11.30997 -11.15958 -10.92294 -10.07348 -9.61680 -9.52070 -9.04715 -9.02214 -7.96065 -5.26634 0.60716 1.43177 1.47127 1.55510 1.62106 1.89232 2.26937 2.36129 2.54302 3.36158 3.47126 3.76827 3.79136 3.83089 3.93229 4.06785 4.08595 4.12929 4.20799 4.24143 4.31157 4.40155 4.46046 4.48381 4.49901 4.57783 4.64024 4.69577 4.74562 4.77355 4.80363 4.82546 4.84701 4.92755 4.99082 5.10753 5.17317 5.20148 5.22121 5.24154 5.29217 5.33742 5.42006 5.43067 5.51842 5.55344 5.75457 5.92743 6.08725 6.24882 6.37136 6.50078 7.25750 7.29641 8.06690 8.31349 9.28087 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.003546 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.671643 B = 7894.374688 C = 9699.160236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.103 3.897 3 N -0.416 5.416 4 C 0.014 3.986 5 C -0.213 4.213 6 C -0.152 4.152 7 C -0.078 4.078 8 C 0.568 3.432 9 O -0.569 6.569 10 N -0.589 5.589 11 C 0.070 3.930 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.101 4.101 15 H 0.078 0.922 16 C -0.138 4.138 17 C 0.163 3.837 18 H 0.078 0.922 19 C -0.088 4.088 20 C 0.149 3.851 21 N -0.747 5.747 22 C -0.248 4.248 23 H 0.078 0.922 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.980 3.020 27 H -0.285 1.285 28 H -0.293 1.293 29 H -0.266 1.266 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.198 0.802 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.029 0.971 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.015 0.985 50 H 0.024 0.976 51 H 0.369 0.631 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.227 16.748 -17.269 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.018 4.018 3 N -0.090 5.090 4 C -0.120 4.120 5 C -0.237 4.237 6 C -0.178 4.178 7 C -0.191 4.191 8 C 0.359 3.641 9 O -0.450 6.450 10 N -0.320 5.320 11 C -0.051 4.051 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.120 4.120 15 H 0.097 0.903 16 C -0.195 4.195 17 C 0.060 3.940 18 H 0.096 0.904 19 C -0.125 4.125 20 C 0.022 3.978 21 N -0.389 5.389 22 C -0.380 4.380 23 H 0.095 0.905 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.808 3.192 27 H -0.212 1.212 28 H -0.220 1.220 29 H -0.191 1.191 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.214 0.786 36 H 0.186 0.814 37 H 0.191 0.809 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.033 0.967 50 H 0.042 0.958 51 H 0.200 0.800 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.716 15.913 -16.896 28.603 hybrid contribution -1.089 -1.101 0.766 1.728 sum 15.627 14.811 -16.130 26.903 Atomic orbital electron populations 1.21997 0.94266 1.03116 1.02048 1.21924 0.95828 0.79605 1.04465 1.44266 1.47391 1.11931 1.05399 1.22644 1.04318 0.92809 0.92252 1.21198 1.09479 0.98257 0.94724 1.21920 1.03563 0.95929 0.96375 1.20189 1.16478 0.95218 0.87242 1.17585 0.80724 0.81180 0.84659 1.90961 1.36896 1.33490 1.83617 1.47794 1.38509 1.40588 1.05143 1.22942 0.87262 0.90215 1.04671 1.21948 0.96883 1.02706 0.95294 1.21559 0.98761 0.97342 0.97037 1.21535 0.94167 0.96445 0.99897 0.90337 1.21785 1.00450 0.96916 1.00377 1.21178 0.95516 0.96330 0.80977 0.90430 1.21901 0.99174 0.97518 0.93956 1.20972 0.90956 0.89957 0.95903 1.42620 1.46679 1.43629 1.05976 1.19701 1.16773 1.14232 0.87246 0.90452 1.25693 1.00031 1.00561 1.00932 1.69875 1.31278 1.32873 1.28346 0.85043 0.78255 0.76972 0.78906 1.21181 1.21987 1.19078 0.94534 0.90687 0.90537 0.85960 0.91529 0.78556 0.81434 0.80882 0.89477 0.85576 0.87845 0.92322 0.90582 0.90461 0.93003 0.91557 0.95234 0.92764 0.92870 0.96730 0.95845 0.79994 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 10.13 71.98 0.73 -3.11 16 2 C 0.10 2.32 6.09 86.38 0.53 2.85 16 3 N -0.42 -9.46 2.76 -511.02 -1.41 -10.87 16 4 C 0.01 0.23 11.38 83.48 0.95 1.18 16 5 C -0.21 -3.27 10.81 22.01 0.24 -3.03 16 6 C -0.15 -2.85 8.54 22.57 0.19 -2.65 16 7 C -0.08 -2.01 6.51 40.35 0.26 -1.74 16 8 C 0.57 17.99 7.37 86.45 0.64 18.63 16 9 O -0.57 -23.06 10.04 -4.33 -0.04 -23.10 16 10 N -0.59 -15.34 2.41 -799.69 -1.93 -17.27 16 11 C 0.07 1.14 5.34 86.36 0.46 1.60 16 12 C -0.13 -1.84 5.74 30.67 0.18 -1.67 16 13 C -0.11 -1.82 5.43 30.62 0.17 -1.65 16 14 C -0.10 -2.52 2.26 -10.71 -0.02 -2.55 16 15 H 0.08 2.10 6.87 -2.39 -0.02 2.08 16 16 C -0.14 -3.80 8.20 71.98 0.59 -3.21 16 17 C 0.16 4.84 2.74 44.98 0.12 4.96 16 18 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 19 C -0.09 -3.56 2.74 30.60 0.08 -3.47 16 20 C 0.15 6.84 5.70 86.38 0.49 7.33 16 21 N -0.75 -43.31 5.60 -343.46 -1.92 -45.24 16 22 C -0.25 -15.09 9.99 84.03 0.84 -14.25 16 23 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 24 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 25 N -0.97 -64.17 13.06 21.65 0.28 -63.89 16 26 Si 0.98 48.71 29.55 68.60 2.03 50.74 16 27 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 30 H 0.04 1.18 7.30 -2.38 -0.02 1.16 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.12 1.81 8.13 -2.39 -0.02 1.79 16 34 H 0.07 1.91 7.23 -2.38 -0.02 1.90 16 35 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.17 2.37 5.80 -2.91 -0.02 2.35 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.13 1.83 3.44 -2.39 -0.01 1.82 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.99 6.33 -2.39 -0.02 0.98 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.05 1.40 5.97 -2.39 -0.01 1.39 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.03 1.01 6.19 -2.39 -0.01 1.00 16 47 H 0.05 2.43 5.32 -2.39 -0.01 2.42 16 48 H 0.05 2.51 6.43 -2.39 -0.02 2.49 16 49 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.02 1.05 6.68 -2.39 -0.02 1.04 16 51 H 0.37 23.32 7.67 -92.71 -0.71 22.61 16 52 H 0.25 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -80.03 388.11 4.13 -75.90 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.21 Total: 38.99 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 6.91 Total: -5.27 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -4.98 Total: -137.26 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -80.03 4.13 -75.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691738424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.298 kcal (2) G-P(sol) polarization free energy of solvation -80.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds