Wall clock time and date at job start Tue Mar 31 2020 18:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47057 * 2 1 4 4 C 1.36451 * 124.84808 * 270.34660 * 3 2 1 5 5 C 1.50693 * 125.57490 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85315 * 180.13808 * 4 3 2 7 7 C 1.46686 * 106.33193 * 359.57773 * 6 4 3 8 8 C 1.47266 * 126.94101 * 180.29624 * 7 6 4 9 9 O 1.21635 * 119.99929 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00348 * 359.97438 * 8 7 6 11 11 C 1.46492 * 120.00409 * 175.84324 * 10 8 7 12 12 C 1.53004 * 109.47416 * 175.44006 * 11 10 8 13 13 C 1.52995 * 109.47662 * 55.43280 * 11 10 8 14 14 N 1.46504 * 109.46594 * 60.00108 * 13 11 10 15 15 C 1.36941 * 119.99676 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00470 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99639 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46946 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46977 * 120.00228 * 19 17 15 22 22 H 1.48494 * 109.47361 * 240.00525 * 19 17 15 23 23 C 1.53006 * 109.46770 * 295.43755 * 11 10 8 24 24 C 1.52997 * 117.50087 * 1.78654 * 23 11 10 25 25 C 1.53001 * 117.49858 * 293.12488 * 23 11 10 26 26 C 1.34656 * 124.85058 * 89.99897 * 3 2 1 27 27 C 1.50702 * 125.80005 * 0.03794 * 26 3 2 28 28 H 1.09007 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47165 * 299.99998 * 1 2 3 30 30 H 1.08996 * 109.46893 * 60.00431 * 1 2 3 31 31 H 1.08998 * 109.47512 * 240.00272 * 2 1 3 32 32 H 1.09002 * 109.47536 * 119.99701 * 2 1 3 33 33 H 1.08999 * 109.47729 * 270.21338 * 5 4 3 34 34 H 1.09000 * 109.47158 * 30.21180 * 5 4 3 35 35 H 1.09000 * 109.47081 * 150.20935 * 5 4 3 36 36 H 1.07998 * 126.83420 * 179.83666 * 6 4 3 37 37 H 0.97005 * 119.99389 * 355.83537 * 10 8 7 38 38 H 1.09001 * 109.47066 * 59.99401 * 12 11 10 39 39 H 1.08994 * 109.47038 * 179.97438 * 12 11 10 40 40 H 1.08995 * 109.46613 * 299.99565 * 12 11 10 41 41 H 1.08995 * 109.47516 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47563 * 300.00828 * 13 11 10 43 43 H 0.96998 * 120.00269 * 0.02562 * 14 13 11 44 44 H 0.97001 * 120.00249 * 180.02562 * 18 17 15 45 45 H 1.09005 * 115.55162 * 147.46258 * 23 11 10 46 46 H 1.09004 * 117.49489 * 0.02562 * 24 23 11 47 47 H 1.08997 * 117.50046 * 145.01959 * 24 23 11 48 48 H 1.08997 * 117.50486 * 214.98219 * 25 23 11 49 49 H 1.09006 * 117.49722 * 0.02562 * 25 23 11 50 50 H 1.08996 * 109.47040 * 270.01807 * 27 26 3 51 51 H 1.08992 * 109.47304 * 30.02488 * 27 26 3 52 52 H 1.08999 * 109.46676 * 150.02790 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2718 2.1186 -1.1198 5 6 2.0960 1.6453 -2.5396 6 6 2.7078 3.3357 -0.7492 7 6 2.7112 3.3437 0.7176 8 6 3.1042 4.4587 1.5957 9 8 3.0577 4.3267 2.8040 10 7 3.5155 5.6253 1.0606 11 6 3.8193 6.7637 1.9310 12 6 4.3686 7.9172 1.0890 13 6 4.8634 6.3478 2.9691 14 7 6.0854 5.9153 2.2863 15 6 7.1650 5.4944 3.0161 16 1 7.1156 5.4810 4.0949 17 6 8.3226 5.0841 2.3692 18 7 8.3828 5.1000 1.0545 19 14 9.7956 4.5107 3.3647 20 1 9.4749 4.5879 4.8126 21 1 10.1206 3.1072 3.0042 22 1 10.9621 5.3806 3.0686 23 6 2.5431 7.2154 2.6440 24 6 1.2639 6.4208 2.3737 25 6 1.4322 7.8242 1.7860 26 6 2.2748 2.1068 1.1050 27 6 2.1091 1.6357 2.5269 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0213 1.1855 -2.8867 34 1 1.2890 0.9137 -2.5814 35 1 1.8503 2.4941 -3.1778 36 1 2.9940 4.1473 -1.4018 37 1 3.6104 5.7110 0.0990 38 1 3.6247 8.2135 0.3495 39 1 4.5942 8.7644 1.7366 40 1 5.2777 7.5954 0.5812 41 1 5.0891 7.1947 3.6170 42 1 4.4722 5.5260 3.5689 43 1 6.1297 5.9270 1.3174 44 1 9.1916 4.8129 0.6025 45 1 2.6826 7.6188 3.6470 46 1 1.3316 5.5760 1.6882 47 1 0.5616 6.3016 3.1987 48 1 0.8406 8.6277 2.2245 49 1 1.6104 7.9026 0.7134 50 1 1.1000 1.8639 2.8700 51 1 2.2746 0.5595 2.5748 52 1 2.8330 2.1434 3.1645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698646271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:28 Heat of formation + Delta-G solvation = 51.150037 kcal Electronic energy + Delta-G solvation = -30577.036744 eV Core-core repulsion = 26771.778710 eV Total energy + Delta-G solvation = -3805.258034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39465 -39.79306 -36.79637 -34.77566 -34.16096 -33.10646 -32.53618 -31.26001 -29.62851 -29.23170 -28.74714 -25.88862 -24.79329 -23.84367 -23.49515 -21.97138 -21.75203 -21.15429 -20.03745 -18.69635 -18.41139 -17.11725 -16.74828 -15.82819 -15.68325 -15.23081 -15.14178 -14.76484 -14.23451 -13.98020 -13.57520 -13.47638 -13.38637 -13.20835 -13.17110 -13.07474 -12.86575 -12.71303 -12.45656 -12.34698 -12.09520 -11.96704 -11.89316 -11.65263 -11.60162 -11.49651 -11.20477 -11.12331 -10.90706 -10.75520 -10.65123 -10.59402 -10.06078 -9.88481 -9.64585 -9.51668 -9.02606 -8.55789 -8.43437 -8.25124 -7.76914 -6.65517 -5.59922 -2.84356 2.09872 2.56211 2.81722 3.52961 3.58633 3.61102 3.87866 4.12615 4.23734 4.43980 4.66569 4.73017 4.73703 4.91607 4.94605 5.02793 5.14443 5.25022 5.29710 5.30366 5.33544 5.39601 5.45782 5.54190 5.62619 5.67460 5.72557 5.74900 5.79014 5.81687 5.84038 5.88971 5.91891 6.06609 6.15186 6.19875 6.22157 6.33052 6.42082 6.46329 6.50787 6.59024 6.79808 6.83170 7.01724 7.16976 7.28162 7.40136 7.44823 7.87851 8.29756 8.60197 9.07211 9.71183 10.32527 10.68025 11.63718 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009288 B = 0.004340 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.970846 B = 6449.940245 C = 8083.166630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 N -0.440 5.440 4 C 0.005 3.995 5 C -0.081 4.081 6 C -0.163 4.163 7 C -0.223 4.223 8 C 0.602 3.398 9 O -0.537 6.537 10 N -0.712 5.712 11 C 0.202 3.798 12 C -0.147 4.147 13 C 0.140 3.860 14 N -0.725 5.725 15 C -0.222 4.222 16 H 0.068 0.932 17 C -0.019 4.019 18 N -0.937 5.937 19 Si 0.902 3.098 20 H -0.281 1.281 21 H -0.294 1.294 22 H -0.294 1.294 23 C -0.141 4.141 24 C -0.161 4.161 25 C -0.185 4.185 26 C 0.102 3.898 27 C -0.091 4.091 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.393 0.607 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.016 0.984 42 H 0.058 0.942 43 H 0.381 0.619 44 H 0.251 0.749 45 H 0.106 0.894 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.071 0.929 51 H 0.056 0.944 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 -5.866 -6.592 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.118 5.118 4 C -0.103 4.103 5 C -0.139 4.139 6 C -0.187 4.187 7 C -0.233 4.233 8 C 0.391 3.609 9 O -0.415 6.415 10 N -0.362 5.362 11 C 0.116 3.884 12 C -0.205 4.205 13 C 0.012 3.988 14 N -0.369 5.369 15 C -0.354 4.354 16 H 0.086 0.914 17 C -0.214 4.214 18 N -0.587 5.587 19 Si 0.734 3.266 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.221 1.221 23 C -0.161 4.161 24 C -0.199 4.199 25 C -0.222 4.222 26 C -0.014 4.014 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.227 0.773 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.215 0.785 44 H 0.060 0.940 45 H 0.124 0.876 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.040 -6.318 -5.595 21.745 hybrid contribution 1.064 -0.351 -0.396 1.188 sum -18.976 -6.669 -5.991 20.987 Atomic orbital electron populations 1.22157 0.94430 1.02778 1.03256 1.21814 0.95438 0.81106 1.04350 1.43551 1.51549 1.11534 1.05145 1.20079 1.09055 0.92669 0.88449 1.20287 1.01844 1.01743 0.89980 1.21755 1.06614 0.96908 0.93394 1.20243 1.14683 0.95292 0.93087 1.16989 0.75830 0.81084 0.87004 1.90676 1.54580 1.81881 1.14394 1.45727 1.69081 1.11712 1.09708 1.19991 0.92448 0.85176 0.90808 1.21978 1.01225 0.97506 0.99770 1.21176 0.86210 0.98085 0.93365 1.42248 1.10243 1.78526 1.05855 1.19289 0.91232 1.34088 0.90754 0.91423 1.24648 0.98115 1.03093 0.95521 1.69662 1.27735 1.55061 1.06244 0.86163 0.83304 0.77966 0.79152 1.20682 1.22192 1.22125 1.22553 0.89911 1.03885 0.99754 1.22936 0.99546 0.94481 1.02904 1.22956 1.03177 0.96738 0.99374 1.20206 1.01295 0.90975 0.88921 1.20537 1.03938 1.00370 0.89934 0.90878 0.91738 0.91894 0.89314 0.89162 0.91222 0.92172 0.90273 0.84109 0.77339 0.93042 0.91242 0.90844 0.96603 0.92392 0.78455 0.93955 0.87631 0.88573 0.89838 0.89594 0.89222 0.91024 0.92472 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.09 0.80 6.09 -4.04 -0.02 0.77 16 3 N -0.44 -5.47 2.69 -107.96 -0.29 -5.76 16 4 C 0.00 0.06 6.85 -81.87 -0.56 -0.50 16 5 C -0.08 -0.71 9.81 36.00 0.35 -0.35 16 6 C -0.16 -2.37 10.45 -37.50 -0.39 -2.76 16 7 C -0.22 -3.80 6.29 -103.35 -0.65 -4.45 16 8 C 0.60 11.36 4.82 -12.59 -0.06 11.30 16 9 O -0.54 -11.39 11.08 5.25 0.06 -11.34 16 10 N -0.71 -12.35 4.20 -48.72 -0.20 -12.56 16 11 C 0.20 3.57 0.55 -131.82 -0.07 3.50 16 12 C -0.15 -2.36 8.18 37.16 0.30 -2.06 16 13 C 0.14 3.15 4.84 -4.04 -0.02 3.13 16 14 N -0.72 -19.30 5.18 -59.91 -0.31 -19.61 16 15 C -0.22 -6.59 9.99 -15.06 -0.15 -6.74 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 18 N -0.94 -29.27 13.06 55.49 0.72 -28.54 16 19 Si 0.90 23.60 29.55 -169.99 -5.02 18.57 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 23 C -0.14 -2.22 4.86 -90.62 -0.44 -2.66 16 24 C -0.16 -2.41 8.53 -26.69 -0.23 -2.64 16 25 C -0.19 -2.40 9.68 -26.69 -0.26 -2.66 16 26 C 0.10 1.54 6.89 -81.88 -0.56 0.98 16 27 C -0.09 -1.23 9.52 36.01 0.34 -0.89 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.09 0.62 7.54 -51.93 -0.39 0.23 16 32 H 0.09 0.70 6.88 -51.93 -0.36 0.35 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.42 7.61 -51.93 -0.40 0.03 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.14 1.81 7.70 -52.49 -0.40 1.41 16 37 H 0.39 6.17 7.61 -40.82 -0.31 5.86 16 38 H 0.05 0.68 6.89 -51.93 -0.36 0.33 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.35 6.86 -51.93 -0.36 0.99 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.45 5.72 -51.93 -0.30 1.16 16 43 H 0.38 10.47 6.35 -40.82 -0.26 10.21 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.25 16 45 H 0.11 1.66 8.06 -51.93 -0.42 1.24 16 46 H 0.10 1.56 5.16 -51.93 -0.27 1.29 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.09 1.11 7.17 -51.93 -0.37 0.74 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.06 0.63 6.92 -51.93 -0.36 0.27 16 52 H 0.10 1.75 6.47 -51.93 -0.34 1.42 16 LS Contribution 404.63 15.07 6.10 6.10 Total: -1.00 -35.11 404.63 -9.74 -44.86 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -8.66 Total: 15.75 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.14 Total: -7.47 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -0.08 Total: -66.47 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.06 Total: -11.34 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.11 -9.74 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698646271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.005 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds