Wall clock time and date at job start Tue Mar 31 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47057 * 2 1 4 4 C 1.36451 * 124.84808 * 270.34660 * 3 2 1 5 5 C 1.50693 * 125.57490 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85315 * 180.13808 * 4 3 2 7 7 C 1.46686 * 106.33193 * 359.57773 * 6 4 3 8 8 C 1.47266 * 126.94101 * 180.29624 * 7 6 4 9 9 O 1.21635 * 119.99929 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00348 * 359.97438 * 8 7 6 11 11 C 1.46492 * 120.00409 * 175.84324 * 10 8 7 12 12 C 1.53004 * 109.47416 * 175.44006 * 11 10 8 13 13 C 1.52995 * 109.47662 * 55.43280 * 11 10 8 14 14 N 1.46504 * 109.46594 * 60.00108 * 13 11 10 15 15 C 1.36941 * 119.99676 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00470 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99639 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00315 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46946 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46977 * 120.00228 * 19 17 15 22 22 H 1.48494 * 109.47361 * 240.00525 * 19 17 15 23 23 C 1.53006 * 109.46770 * 295.43755 * 11 10 8 24 24 C 1.52997 * 117.50087 * 1.78654 * 23 11 10 25 25 C 1.53001 * 117.49858 * 293.12488 * 23 11 10 26 26 C 1.34656 * 124.85058 * 89.99897 * 3 2 1 27 27 C 1.50702 * 125.80005 * 0.03794 * 26 3 2 28 28 H 1.09007 * 109.46734 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47165 * 299.99998 * 1 2 3 30 30 H 1.08996 * 109.46893 * 60.00431 * 1 2 3 31 31 H 1.08998 * 109.47512 * 240.00272 * 2 1 3 32 32 H 1.09002 * 109.47536 * 119.99701 * 2 1 3 33 33 H 1.08999 * 109.47729 * 270.21338 * 5 4 3 34 34 H 1.09000 * 109.47158 * 30.21180 * 5 4 3 35 35 H 1.09000 * 109.47081 * 150.20935 * 5 4 3 36 36 H 1.07998 * 126.83420 * 179.83666 * 6 4 3 37 37 H 0.97005 * 119.99389 * 355.83537 * 10 8 7 38 38 H 1.09001 * 109.47066 * 59.99401 * 12 11 10 39 39 H 1.08994 * 109.47038 * 179.97438 * 12 11 10 40 40 H 1.08995 * 109.46613 * 299.99565 * 12 11 10 41 41 H 1.08995 * 109.47516 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47563 * 300.00828 * 13 11 10 43 43 H 0.96998 * 120.00269 * 0.02562 * 14 13 11 44 44 H 0.97001 * 120.00249 * 180.02562 * 18 17 15 45 45 H 1.09005 * 115.55162 * 147.46258 * 23 11 10 46 46 H 1.09004 * 117.49489 * 0.02562 * 24 23 11 47 47 H 1.08997 * 117.50046 * 145.01959 * 24 23 11 48 48 H 1.08997 * 117.50486 * 214.98219 * 25 23 11 49 49 H 1.09006 * 117.49722 * 0.02562 * 25 23 11 50 50 H 1.08996 * 109.47040 * 270.01807 * 27 26 3 51 51 H 1.08992 * 109.47304 * 30.02488 * 27 26 3 52 52 H 1.08999 * 109.46676 * 150.02790 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2718 2.1186 -1.1198 5 6 2.0960 1.6453 -2.5396 6 6 2.7078 3.3357 -0.7492 7 6 2.7112 3.3437 0.7176 8 6 3.1042 4.4587 1.5957 9 8 3.0577 4.3267 2.8040 10 7 3.5155 5.6253 1.0606 11 6 3.8193 6.7637 1.9310 12 6 4.3686 7.9172 1.0890 13 6 4.8634 6.3478 2.9691 14 7 6.0854 5.9153 2.2863 15 6 7.1650 5.4944 3.0161 16 1 7.1156 5.4810 4.0949 17 6 8.3226 5.0841 2.3692 18 7 8.3828 5.1000 1.0545 19 14 9.7956 4.5107 3.3647 20 1 9.4749 4.5879 4.8126 21 1 10.1206 3.1072 3.0042 22 1 10.9621 5.3806 3.0686 23 6 2.5431 7.2154 2.6440 24 6 1.2639 6.4208 2.3737 25 6 1.4322 7.8242 1.7860 26 6 2.2748 2.1068 1.1050 27 6 2.1091 1.6357 2.5269 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0213 1.1855 -2.8867 34 1 1.2890 0.9137 -2.5814 35 1 1.8503 2.4941 -3.1778 36 1 2.9940 4.1473 -1.4018 37 1 3.6104 5.7110 0.0990 38 1 3.6247 8.2135 0.3495 39 1 4.5942 8.7644 1.7366 40 1 5.2777 7.5954 0.5812 41 1 5.0891 7.1947 3.6170 42 1 4.4722 5.5260 3.5689 43 1 6.1297 5.9270 1.3174 44 1 9.1916 4.8129 0.6025 45 1 2.6826 7.6188 3.6470 46 1 1.3316 5.5760 1.6882 47 1 0.5616 6.3016 3.1987 48 1 0.8406 8.6277 2.2245 49 1 1.6104 7.9026 0.7134 50 1 1.1000 1.8639 2.8700 51 1 2.2746 0.5595 2.5748 52 1 2.8330 2.1434 3.1645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698646271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:27 Heat of formation + Delta-G solvation = 29.719813 kcal Electronic energy + Delta-G solvation = -30577.966028 eV Core-core repulsion = 26771.778710 eV Total energy + Delta-G solvation = -3806.187319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.44568 -41.15894 -38.17271 -36.54396 -35.05352 -34.73851 -33.53688 -33.06998 -31.28371 -30.17521 -29.75767 -27.62579 -25.97631 -25.43075 -24.57175 -23.11933 -22.99361 -22.68484 -21.18462 -20.13661 -19.53015 -19.17235 -17.88559 -17.09074 -16.90981 -16.78539 -16.26763 -16.11712 -15.64929 -15.38262 -15.04542 -14.92647 -14.69009 -14.50650 -14.30344 -14.07838 -14.02978 -13.71495 -13.50947 -13.46828 -13.40229 -13.21256 -13.12057 -12.97184 -12.85741 -12.79559 -12.48656 -12.32628 -12.22769 -12.21462 -12.10506 -12.07555 -11.95169 -11.74351 -11.15918 -11.03159 -10.89560 -10.26439 -9.80406 -9.43207 -8.88214 -8.84372 -7.92306 -5.17454 0.89971 1.43153 1.44541 1.50777 1.54800 1.88653 2.53823 2.57855 2.79926 3.02158 3.40760 3.71603 3.78503 3.81393 3.93769 4.02160 4.06638 4.11483 4.19021 4.22442 4.32575 4.39158 4.41643 4.44994 4.50828 4.60923 4.66660 4.70069 4.77814 4.82361 4.82944 4.86045 4.93917 4.95337 4.99577 5.00519 5.06622 5.11444 5.13890 5.24923 5.27088 5.34247 5.37339 5.39239 5.43278 5.49320 5.88856 5.93535 6.20724 6.30664 6.45075 6.92065 7.37046 7.66701 8.14571 8.42167 9.31336 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009288 B = 0.004340 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.970846 B = 6449.940245 C = 8083.166630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.084 3.916 3 N -0.434 5.434 4 C 0.014 3.986 5 C -0.078 4.078 6 C -0.189 4.189 7 C -0.264 4.264 8 C 0.595 3.405 9 O -0.571 6.571 10 N -0.707 5.707 11 C 0.209 3.791 12 C -0.138 4.138 13 C 0.141 3.859 14 N -0.728 5.728 15 C -0.238 4.238 16 H 0.062 0.938 17 C -0.072 4.072 18 N -0.965 5.965 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.294 1.294 22 H -0.288 1.288 23 C -0.160 4.160 24 C -0.169 4.169 25 C -0.150 4.150 26 C 0.090 3.910 27 C -0.083 4.083 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.400 0.600 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.013 0.987 42 H 0.031 0.969 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.458 -6.633 -8.067 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.036 4.036 3 N -0.111 5.111 4 C -0.094 4.094 5 C -0.136 4.136 6 C -0.212 4.212 7 C -0.273 4.273 8 C 0.386 3.614 9 O -0.453 6.453 10 N -0.357 5.357 11 C 0.122 3.878 12 C -0.196 4.196 13 C 0.014 3.986 14 N -0.371 5.371 15 C -0.370 4.370 16 H 0.080 0.920 17 C -0.265 4.265 18 N -0.617 5.617 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.222 1.222 22 H -0.214 1.214 23 C -0.180 4.180 24 C -0.206 4.206 25 C -0.186 4.186 26 C -0.028 4.028 27 C -0.141 4.141 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.235 0.765 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.049 0.951 43 H 0.209 0.791 44 H 0.059 0.941 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.128 0.872 49 H 0.119 0.881 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.535 -7.082 -7.081 23.750 hybrid contribution 1.471 -0.186 0.075 1.485 sum -20.064 -7.268 -7.006 22.461 Atomic orbital electron populations 1.22114 0.92960 1.04251 1.02577 1.22204 0.96625 0.78944 1.05792 1.43848 1.50321 1.12717 1.04230 1.20688 1.06692 0.91945 0.90112 1.20414 1.03016 1.02866 0.87274 1.21956 1.08321 0.98552 0.92377 1.20365 1.16981 0.95674 0.94328 1.17395 0.75280 0.81786 0.86926 1.90646 1.56236 1.82541 1.15867 1.45682 1.68590 1.11458 1.09984 1.19837 0.92172 0.85699 0.90058 1.21905 1.00860 0.96729 1.00095 1.21202 0.86125 0.96724 0.94548 1.42323 1.10906 1.78387 1.05522 1.19591 0.92469 1.34126 0.90859 0.91990 1.25426 1.00772 1.03608 0.96654 1.69807 1.28347 1.55912 1.07604 0.85140 0.79769 0.77162 0.78144 1.19737 1.22160 1.21439 1.22424 0.89498 1.05804 1.00242 1.22879 0.99126 0.95413 1.03166 1.23048 1.00225 0.95777 0.99595 1.20375 1.01241 0.91043 0.90130 1.20428 1.03382 1.01415 0.88829 0.88294 0.93054 0.91925 0.87161 0.88520 0.90586 0.89887 0.89032 0.83284 0.76497 0.89622 0.90768 0.93528 0.96891 0.95143 0.79139 0.94149 0.88048 0.90051 0.89558 0.87152 0.88052 0.89941 0.89926 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.24 71.98 0.74 -1.04 16 2 C 0.08 1.21 6.09 86.38 0.53 1.74 16 3 N -0.43 -10.28 2.69 -495.48 -1.33 -11.61 16 4 C 0.01 0.33 6.85 40.98 0.28 0.61 16 5 C -0.08 -1.14 9.81 71.23 0.70 -0.44 16 6 C -0.19 -5.52 10.45 23.62 0.25 -5.27 16 7 C -0.26 -9.31 6.29 -19.04 -0.12 -9.43 16 8 C 0.60 23.71 4.82 86.62 0.42 24.13 16 9 O -0.57 -25.97 11.08 -4.14 -0.05 -26.02 16 10 N -0.71 -25.43 4.20 -426.29 -1.79 -27.22 16 11 C 0.21 7.56 0.55 3.61 0.00 7.57 16 12 C -0.14 -4.40 8.18 71.98 0.59 -3.81 16 13 C 0.14 6.69 4.84 86.38 0.42 7.10 16 14 N -0.73 -40.43 5.18 -343.45 -1.78 -42.21 16 15 C -0.24 -14.59 9.99 84.03 0.84 -13.75 16 16 H 0.06 3.78 7.83 -2.91 -0.02 3.75 16 17 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 18 N -0.97 -61.41 13.06 21.65 0.28 -61.13 16 19 Si 0.97 49.24 29.55 68.60 2.03 51.27 16 20 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 22 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 23 C -0.16 -5.01 4.86 -10.79 -0.05 -5.06 16 24 C -0.17 -5.01 8.53 30.62 0.26 -4.75 16 25 C -0.15 -3.55 9.68 30.62 0.30 -3.25 16 26 C 0.09 2.76 6.89 41.78 0.29 3.04 16 27 C -0.08 -2.34 9.52 71.24 0.68 -1.67 16 28 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.11 1.14 7.54 -2.39 -0.02 1.12 16 32 H 0.10 1.28 6.88 -2.39 -0.02 1.26 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 0.85 7.61 -2.39 -0.02 0.83 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.15 3.86 7.70 -2.91 -0.02 3.84 16 37 H 0.40 12.94 7.61 -92.70 -0.71 12.23 16 38 H 0.09 2.11 6.89 -2.39 -0.02 2.10 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.74 6.86 -2.39 -0.02 1.72 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.03 1.63 5.72 -2.39 -0.01 1.62 16 43 H 0.38 21.48 6.35 -92.71 -0.59 20.89 16 44 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.10 3.23 8.06 -2.38 -0.02 3.21 16 46 H 0.08 2.71 5.16 -2.38 -0.01 2.69 16 47 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.10 2.20 7.17 -2.38 -0.02 2.18 16 50 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.08 1.81 6.92 -2.39 -0.02 1.79 16 52 H 0.07 2.44 6.47 -2.39 -0.02 2.43 16 Total: -1.00 -79.27 404.63 3.57 -75.70 By element: Atomic # 1 Polarization: 49.82 SS G_CDS: -0.36 Total: 49.45 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 6.57 Total: -8.23 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -4.61 Total: -142.17 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.03 Total: 51.27 kcal Total: -79.27 3.57 -75.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698646271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.416 kcal (2) G-P(sol) polarization free energy of solvation -79.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds