Wall clock time and date at job start Tue Mar 31 2020 17:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.36930 * 120.00358 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00165 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00294 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 120.00296 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46916 * 59.99593 * 11 9 7 13 13 H 1.48497 * 109.46964 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46863 * 299.99827 * 11 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 20 20 C 1.50700 * 109.47208 * 180.02562 * 19 18 16 21 21 C 1.38309 * 119.96004 * 269.72593 * 20 19 18 22 22 C 1.38267 * 120.14639 * 179.72504 * 21 20 19 23 23 C 1.38119 * 120.07531 * 0.54864 * 22 21 20 24 24 C 1.38892 * 119.92488 * 359.72937 * 23 22 21 25 25 N 1.39670 * 120.07431 * 179.97438 * 24 23 22 26 26 C 1.46503 * 119.99997 * 180.02562 * 25 24 23 27 27 C 1.46500 * 120.00331 * 0.02562 * 25 24 23 28 28 C 1.38079 * 119.96456 * 89.99880 * 20 19 18 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 35 35 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 36 36 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 37 37 H 0.97001 * 120.00389 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 39 39 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 40 40 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 41 41 H 1.09000 * 109.46887 * 300.00372 * 19 18 16 42 42 H 1.08998 * 109.46846 * 59.99549 * 19 18 16 43 43 H 1.08005 * 119.92594 * 359.97438 * 21 20 19 44 44 H 1.08000 * 119.96096 * 180.27558 * 22 21 20 45 45 H 1.07998 * 120.03909 * 179.74837 * 23 22 21 46 46 H 1.08994 * 109.47286 * 59.99694 * 26 25 24 47 47 H 1.09004 * 109.47220 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.47116 * 299.99835 * 26 25 24 49 49 H 1.09008 * 109.47078 * 89.99550 * 27 25 24 50 50 H 1.08993 * 109.47624 * 209.99700 * 27 25 24 51 51 H 1.08996 * 109.46690 * 330.00420 * 27 25 24 52 52 H 1.08002 * 120.03434 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3952 -1.3408 -2.7793 8 1 6.0938 -0.8608 -2.1099 9 6 5.8579 -1.9950 -3.9127 10 7 5.0068 -2.5805 -4.7283 11 14 7.6889 -2.0459 -4.2799 12 1 8.3993 -2.7181 -3.1625 13 1 7.9206 -2.7999 -5.5381 14 1 8.2021 -0.6606 -4.4307 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 6 2.6899 0.2511 4.7616 20 6 3.1870 -0.4608 5.9933 21 6 2.2877 -1.0722 6.8480 22 6 2.7400 -1.7313 7.9762 23 6 4.0913 -1.7715 8.2593 24 6 4.9966 -1.1536 7.4062 25 7 6.3637 -1.1919 7.6897 26 6 7.3171 -0.5391 6.7890 27 6 6.8443 -1.8847 8.8877 28 6 4.5392 -0.4972 6.2704 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 3.8531 0.4371 -1.3574 35 1 3.9995 -1.0727 -0.4262 36 1 3.4258 -1.7355 -3.1109 37 1 5.3300 -3.0373 -5.5206 38 1 2.2492 -1.6319 1.1524 39 1 1.9698 -1.5528 3.8298 40 1 3.6437 -1.1227 3.4038 41 1 3.3637 1.0734 4.5208 42 1 1.6899 0.6432 4.9468 43 1 1.2301 -1.0381 6.6315 44 1 2.0355 -2.2115 8.6391 45 1 4.4436 -2.2830 9.1428 46 1 7.0903 0.5253 6.7292 47 1 8.3290 -0.6745 7.1710 48 1 7.2416 -0.9830 5.7963 49 1 7.0508 -2.9274 8.6462 50 1 7.7571 -1.4063 9.2426 51 1 6.0825 -1.8360 9.6657 52 1 5.2405 -0.0161 5.6047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699130548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:19 Heat of formation + Delta-G solvation = -10.734161 kcal Electronic energy + Delta-G solvation = -27679.620822 eV Core-core repulsion = 23871.679287 eV Total energy + Delta-G solvation = -3807.941535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.10096 -39.58943 -36.91667 -36.41662 -34.33749 -33.80445 -31.95229 -30.88896 -30.45517 -29.62318 -28.33405 -27.84901 -25.09460 -24.82287 -23.87990 -21.95152 -21.59920 -20.80877 -20.37399 -20.08626 -17.60291 -17.20107 -16.75380 -16.24069 -16.01826 -15.71532 -15.40101 -15.35861 -14.72047 -14.41141 -14.11947 -14.04557 -13.80052 -13.59511 -13.35980 -13.28684 -13.01189 -12.96451 -12.88636 -12.80705 -12.49990 -12.28352 -12.14691 -12.00135 -11.79526 -11.61973 -11.19041 -11.11871 -11.01005 -10.92767 -10.76684 -10.62297 -10.55600 -10.06822 -10.02781 -9.72724 -9.68258 -8.95351 -8.88309 -8.84078 -7.53137 -6.92454 -5.76685 -3.05434 1.24581 1.44759 2.75533 2.83415 3.29259 3.43821 3.47972 3.49231 3.71677 4.50207 4.57609 4.65031 4.68057 4.82587 4.91102 4.94243 4.97103 4.99893 5.05376 5.16005 5.25676 5.28285 5.29727 5.33165 5.38716 5.39272 5.44612 5.50696 5.52875 5.55690 5.74522 5.79564 5.80924 5.83855 5.96327 6.02258 6.07369 6.12477 6.26027 6.30700 6.35863 6.36347 6.56311 6.61775 6.69757 6.82690 6.88763 6.96691 7.24876 7.63614 7.69337 8.34548 8.42425 9.53277 10.11314 10.46047 11.46199 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.002315 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.610154 B =12089.663497 C =14645.790594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.720 5.720 16 C 0.513 3.487 17 O -0.547 6.547 18 C -0.135 4.135 19 C -0.064 4.064 20 C -0.034 4.034 21 C -0.174 4.174 22 C -0.072 4.072 23 C -0.204 4.204 24 C 0.214 3.786 25 N -0.640 5.640 26 C 0.095 3.905 27 C 0.094 3.906 28 C -0.189 4.189 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.256 0.744 38 H 0.402 0.598 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.047 0.953 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 1.346 28.120 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 N -0.372 5.372 16 C 0.300 3.700 17 O -0.425 6.425 18 C -0.175 4.175 19 C -0.102 4.102 20 C -0.034 4.034 21 C -0.194 4.194 22 C -0.091 4.091 23 C -0.226 4.226 24 C 0.113 3.887 25 N -0.353 5.353 26 C -0.048 4.048 27 C -0.049 4.049 28 C -0.211 4.211 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.236 0.764 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.233 2.214 28.185 28.587 hybrid contribution 1.067 -0.796 -0.514 1.427 sum -3.166 1.418 27.671 27.887 Atomic orbital electron populations 1.22156 0.95554 1.01923 1.02227 1.20962 0.93494 0.97690 0.83914 0.89460 1.22063 0.98011 1.00778 0.96457 1.20628 0.90422 0.95568 0.90701 1.42366 1.05353 1.64956 1.25158 1.19183 0.83852 1.28533 1.05499 0.91323 1.24744 0.97716 1.00919 0.97669 1.69647 1.32874 1.40696 1.15103 0.86260 0.85120 0.77496 0.77278 1.21280 1.21654 1.21255 1.46164 1.67037 1.14248 1.09727 1.20648 0.77330 0.87349 0.84686 1.90684 1.50412 1.16106 1.85266 1.21643 1.03601 0.99589 0.92655 1.20329 1.02875 0.96822 0.90177 1.19644 0.92617 0.95802 0.95367 1.20825 0.99270 1.02793 0.96519 1.20846 0.94665 0.97099 0.96477 1.20640 0.93123 1.07263 1.01559 1.17799 0.83244 0.94109 0.93584 1.46323 1.03045 1.59654 1.26238 1.21620 0.92137 0.97176 0.93910 1.21642 0.99730 0.96457 0.87086 1.20557 0.95611 1.06426 0.98552 0.92582 0.92447 0.91628 0.91402 0.90331 0.96476 0.96389 0.78323 0.93464 0.76396 0.88821 0.88691 0.90245 0.90168 0.86434 0.86319 0.86349 0.92731 0.90958 0.92528 0.93472 0.91647 0.91421 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.55 16 2 C 0.14 1.97 2.57 -67.93 -0.17 1.80 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.13 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.15 3.11 6.15 -4.04 -0.02 3.08 16 6 N -0.73 -18.74 5.60 -59.91 -0.34 -19.07 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 11 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 N -0.72 -8.97 4.53 -53.80 -0.24 -9.22 16 16 C 0.51 6.71 7.79 -10.98 -0.09 6.62 16 17 O -0.55 -9.02 15.65 5.55 0.09 -8.94 16 18 C -0.13 -1.35 5.68 -27.88 -0.16 -1.50 16 19 C -0.06 -0.66 4.63 -27.88 -0.13 -0.79 16 20 C -0.03 -0.34 5.13 -104.65 -0.54 -0.88 16 21 C -0.17 -1.64 9.70 -39.54 -0.38 -2.03 16 22 C -0.07 -0.64 10.04 -39.61 -0.40 -1.03 16 23 C -0.20 -1.86 9.21 -39.38 -0.36 -2.23 16 24 C 0.21 2.14 6.55 -83.79 -0.55 1.59 16 25 N -0.64 -5.42 3.41 -187.55 -0.64 -6.06 16 26 C 0.09 0.67 9.40 59.85 0.56 1.23 16 27 C 0.09 0.56 10.16 59.85 0.61 1.17 16 28 C -0.19 -1.96 8.96 -39.38 -0.35 -2.31 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.36 7.75 -51.92 -0.40 -0.04 16 36 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.40 4.36 8.60 -40.82 -0.35 4.01 16 39 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 42 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.88 6.14 -52.49 -0.32 0.56 16 46 H 0.05 0.38 7.95 -51.93 -0.41 -0.03 16 47 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 48 H 0.06 0.42 7.95 -51.93 -0.41 0.01 16 49 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 50 H 0.06 0.29 7.92 -51.93 -0.41 -0.12 16 51 H 0.07 0.36 6.20 -51.93 -0.32 0.04 16 52 H 0.12 1.19 6.74 -52.49 -0.35 0.84 16 LS Contribution 422.84 15.07 6.37 6.37 Total: -1.00 -34.03 422.84 -10.20 -44.23 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -9.13 Total: 9.37 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.01 Total: -6.54 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.49 Total: -62.01 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.03 -10.20 -44.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699130548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.497 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds