Wall clock time and date at job start Tue Mar 31 2020 17:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.36930 * 120.00358 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00165 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00294 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 120.00296 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46916 * 59.99593 * 11 9 7 13 13 H 1.48497 * 109.46964 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46863 * 299.99827 * 11 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 20 20 C 1.50700 * 109.47208 * 180.02562 * 19 18 16 21 21 C 1.38309 * 119.96004 * 269.72593 * 20 19 18 22 22 C 1.38267 * 120.14639 * 179.72504 * 21 20 19 23 23 C 1.38119 * 120.07531 * 0.54864 * 22 21 20 24 24 C 1.38892 * 119.92488 * 359.72937 * 23 22 21 25 25 N 1.39670 * 120.07431 * 179.97438 * 24 23 22 26 26 C 1.46503 * 119.99997 * 180.02562 * 25 24 23 27 27 C 1.46500 * 120.00331 * 0.02562 * 25 24 23 28 28 C 1.38079 * 119.96456 * 89.99880 * 20 19 18 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 35 35 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 36 36 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 37 37 H 0.97001 * 120.00389 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 39 39 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 40 40 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 41 41 H 1.09000 * 109.46887 * 300.00372 * 19 18 16 42 42 H 1.08998 * 109.46846 * 59.99549 * 19 18 16 43 43 H 1.08005 * 119.92594 * 359.97438 * 21 20 19 44 44 H 1.08000 * 119.96096 * 180.27558 * 22 21 20 45 45 H 1.07998 * 120.03909 * 179.74837 * 23 22 21 46 46 H 1.08994 * 109.47286 * 59.99694 * 26 25 24 47 47 H 1.09004 * 109.47220 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.47116 * 299.99835 * 26 25 24 49 49 H 1.09008 * 109.47078 * 89.99550 * 27 25 24 50 50 H 1.08993 * 109.47624 * 209.99700 * 27 25 24 51 51 H 1.08996 * 109.46690 * 330.00420 * 27 25 24 52 52 H 1.08002 * 120.03434 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3952 -1.3408 -2.7793 8 1 6.0938 -0.8608 -2.1099 9 6 5.8579 -1.9950 -3.9127 10 7 5.0068 -2.5805 -4.7283 11 14 7.6889 -2.0459 -4.2799 12 1 8.3993 -2.7181 -3.1625 13 1 7.9206 -2.7999 -5.5381 14 1 8.2021 -0.6606 -4.4307 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 6 2.6899 0.2511 4.7616 20 6 3.1870 -0.4608 5.9933 21 6 2.2877 -1.0722 6.8480 22 6 2.7400 -1.7313 7.9762 23 6 4.0913 -1.7715 8.2593 24 6 4.9966 -1.1536 7.4062 25 7 6.3637 -1.1919 7.6897 26 6 7.3171 -0.5391 6.7890 27 6 6.8443 -1.8847 8.8877 28 6 4.5392 -0.4972 6.2704 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 3.8531 0.4371 -1.3574 35 1 3.9995 -1.0727 -0.4262 36 1 3.4258 -1.7355 -3.1109 37 1 5.3300 -3.0373 -5.5206 38 1 2.2492 -1.6319 1.1524 39 1 1.9698 -1.5528 3.8298 40 1 3.6437 -1.1227 3.4038 41 1 3.3637 1.0734 4.5208 42 1 1.6899 0.6432 4.9468 43 1 1.2301 -1.0381 6.6315 44 1 2.0355 -2.2115 8.6391 45 1 4.4436 -2.2830 9.1428 46 1 7.0903 0.5253 6.7292 47 1 8.3290 -0.6745 7.1710 48 1 7.2416 -0.9830 5.7963 49 1 7.0508 -2.9274 8.6462 50 1 7.7571 -1.4063 9.2426 51 1 6.0825 -1.8360 9.6657 52 1 5.2405 -0.0161 5.6047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699130548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:18 Heat of formation + Delta-G solvation = -30.929678 kcal Electronic energy + Delta-G solvation = -27680.496565 eV Core-core repulsion = 23871.679287 eV Total energy + Delta-G solvation = -3808.817278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.01452 -40.44391 -37.97833 -37.34512 -36.09166 -34.62025 -33.58601 -32.25370 -31.21575 -30.39898 -29.41236 -28.90415 -26.01770 -25.68764 -25.42949 -23.29066 -22.57333 -21.97180 -21.39019 -20.89179 -19.21549 -18.35224 -17.75236 -17.22959 -16.92889 -16.68175 -16.37640 -16.26249 -15.93180 -15.51532 -15.35267 -15.29267 -15.02440 -14.79358 -14.64701 -14.33207 -14.02606 -13.95142 -13.65281 -13.47633 -13.41351 -13.10576 -13.01936 -12.91935 -12.87165 -12.72658 -12.67998 -12.36548 -12.33219 -12.30272 -12.00752 -11.92195 -11.89938 -11.65045 -11.62258 -10.95722 -10.84855 -10.62486 -10.02762 -9.61798 -9.02055 -8.17867 -7.96848 -5.26091 0.52770 0.74254 1.46306 1.49324 1.55654 1.71163 2.25608 2.30568 2.54658 2.99290 3.36438 3.61174 3.73944 3.97529 4.05358 4.07812 4.15124 4.17853 4.23068 4.25704 4.34949 4.42901 4.43588 4.51142 4.57001 4.61340 4.65903 4.69020 4.71299 4.76790 4.77113 4.81676 4.87482 4.88360 4.91645 5.01991 5.08611 5.12619 5.21781 5.24416 5.27488 5.34615 5.42548 5.46853 5.62168 5.67914 5.84738 6.02242 6.25556 6.37646 6.59178 6.62455 7.31956 7.32006 8.07216 8.31444 9.26247 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.002315 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.610154 B =12089.663497 C =14645.790594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.066 0.934 4 C -0.119 4.119 5 C 0.154 3.846 6 N -0.746 5.746 7 C -0.250 4.250 8 H 0.071 0.929 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.973 3.027 12 H -0.276 1.276 13 H -0.293 1.293 14 H -0.280 1.280 15 N -0.716 5.716 16 C 0.512 3.488 17 O -0.585 6.585 18 C -0.125 4.125 19 C -0.057 4.057 20 C -0.040 4.040 21 C -0.184 4.184 22 C -0.073 4.073 23 C -0.211 4.211 24 C 0.201 3.799 25 N -0.648 5.648 26 C 0.092 3.908 27 C 0.089 3.911 28 C -0.207 4.207 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.005 0.995 35 H 0.024 0.976 36 H 0.376 0.624 37 H 0.253 0.747 38 H 0.412 0.588 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.142 0.858 45 H 0.135 0.865 46 H 0.051 0.949 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.050 0.950 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 0.401 29.706 30.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.084 0.916 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.382 4.382 8 H 0.089 0.911 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.202 1.202 13 H -0.219 1.219 14 H -0.206 1.206 15 N -0.367 5.367 16 C 0.300 3.700 17 O -0.465 6.465 18 C -0.165 4.165 19 C -0.095 4.095 20 C -0.041 4.041 21 C -0.204 4.204 22 C -0.092 4.092 23 C -0.233 4.233 24 C 0.099 3.901 25 N -0.359 5.359 26 C -0.051 4.051 27 C -0.053 4.053 28 C -0.229 4.229 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.023 0.977 35 H 0.042 0.958 36 H 0.208 0.792 37 H 0.061 0.939 38 H 0.248 0.752 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.147 0.853 44 H 0.160 0.840 45 H 0.153 0.847 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.099 0.901 51 H 0.092 0.908 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.053 1.264 29.811 30.111 hybrid contribution 1.021 -0.468 -0.943 1.466 sum -3.032 0.796 28.868 29.038 Atomic orbital electron populations 1.22071 0.93672 1.02921 1.02355 1.20794 0.94826 0.96315 0.83522 0.91580 1.21896 0.94559 1.01745 0.97474 1.20756 0.93533 0.94084 0.88840 1.42563 1.04492 1.65290 1.26537 1.19562 0.85284 1.27855 1.05458 0.91097 1.25571 1.02103 1.01163 0.97772 1.69797 1.34702 1.41786 1.15510 0.85219 0.80014 0.77580 0.76999 1.20212 1.21873 1.20599 1.46134 1.66669 1.14680 1.09263 1.21150 0.76509 0.86926 0.85412 1.90670 1.52131 1.17837 1.85861 1.21619 1.04285 0.99671 0.90883 1.20216 1.02165 0.96490 0.90638 1.19635 0.92770 0.96243 0.95460 1.21023 0.99781 1.02863 0.96703 1.21155 0.95052 0.96553 0.96433 1.20912 0.93284 1.07144 1.01963 1.18023 0.84280 0.94189 0.93644 1.46567 1.02713 1.59657 1.27005 1.21680 0.92971 0.96827 0.93614 1.21795 1.00580 0.96554 0.86362 1.20630 0.95812 1.07307 0.99189 0.91108 0.93067 0.90776 0.90289 0.90316 0.97676 0.95805 0.79242 0.93868 0.75224 0.86520 0.88016 0.91881 0.90590 0.85267 0.84027 0.84731 0.93084 0.88970 0.93372 0.93192 0.90055 0.90836 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.48 71.98 0.68 -2.69 16 2 C 0.15 4.00 2.57 44.99 0.12 4.11 16 3 H 0.07 2.07 7.58 -2.38 -0.02 2.05 16 4 C -0.12 -3.57 4.87 30.59 0.15 -3.42 16 5 C 0.15 6.16 6.15 86.38 0.53 6.69 16 6 N -0.75 -38.10 5.60 -343.46 -1.92 -40.02 16 7 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 10 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 11 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 N -0.72 -17.05 4.53 -442.52 -2.00 -19.05 16 16 C 0.51 13.10 7.79 87.66 0.68 13.78 16 17 O -0.58 -19.47 15.65 -3.04 -0.05 -19.51 16 18 C -0.12 -2.38 5.68 29.85 0.17 -2.21 16 19 C -0.06 -1.18 4.63 29.85 0.14 -1.04 16 20 C -0.04 -0.80 5.13 -19.89 -0.10 -0.91 16 21 C -0.18 -3.24 9.70 22.29 0.22 -3.02 16 22 C -0.07 -1.16 10.04 22.25 0.22 -0.94 16 23 C -0.21 -3.54 9.21 22.40 0.21 -3.34 16 24 C 0.20 3.87 6.55 38.21 0.25 4.12 16 25 N -0.65 -10.34 3.41 -747.28 -2.55 -12.89 16 26 C 0.09 1.25 9.40 127.77 1.20 2.45 16 27 C 0.09 0.91 10.16 127.77 1.30 2.21 16 28 C -0.21 -4.29 8.96 22.40 0.20 -4.09 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.02 0.94 7.75 -2.38 -0.02 0.92 16 36 H 0.38 20.08 7.67 -92.71 -0.71 19.37 16 37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.41 8.22 8.60 -92.71 -0.80 7.42 16 39 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.48 8.04 -2.39 -0.02 1.47 16 42 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 43 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.13 1.72 6.14 -2.91 -0.02 1.71 16 46 H 0.05 0.71 7.95 -2.39 -0.02 0.69 16 47 H 0.09 0.84 7.79 -2.39 -0.02 0.82 16 48 H 0.05 0.72 7.95 -2.38 -0.02 0.70 16 49 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.08 0.56 7.92 -2.39 -0.02 0.54 16 51 H 0.07 0.65 6.20 -2.39 -0.01 0.64 16 52 H 0.12 2.40 6.74 -2.91 -0.02 2.38 16 Total: -1.00 -72.59 422.84 2.45 -70.14 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.61 Total: 37.29 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 7.27 Total: -5.38 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -6.19 Total: -130.75 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -72.59 2.45 -70.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699130548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.212 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds