Wall clock time and date at job start Tue Mar 31 2020 18:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47187 * 2 1 4 4 C 1.46896 * 111.00194 * 201.40112 * 3 2 1 5 5 C 1.46906 * 111.00076 * 77.45233 * 3 2 1 6 6 H 1.09003 * 109.47091 * 49.31388 * 5 3 2 7 7 C 1.50709 * 109.46783 * 289.31806 * 5 3 2 8 8 O 1.21284 * 119.99603 * 321.25409 * 7 5 3 9 9 N 1.34771 * 119.99821 * 141.25746 * 7 5 3 10 10 C 1.46501 * 120.00457 * 5.07678 * 9 7 5 11 11 C 1.46502 * 119.99538 * 184.80731 * 9 7 5 12 12 C 1.53003 * 109.46788 * 270.26903 * 11 9 7 13 13 C 1.53002 * 109.47018 * 180.02562 * 12 11 9 14 14 N 1.46498 * 109.47379 * 180.02562 * 13 12 11 15 15 C 1.36930 * 120.00342 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00059 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00281 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00371 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99868 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47367 * 89.99841 * 19 17 15 21 21 H 1.48494 * 109.47069 * 210.00047 * 19 17 15 22 22 H 1.48498 * 109.46824 * 329.99907 * 19 17 15 23 23 C 1.50699 * 109.47252 * 169.32004 * 5 3 2 24 24 C 1.38234 * 120.00255 * 47.57844 * 23 5 3 25 25 C 1.38230 * 119.99744 * 179.78692 * 24 23 5 26 26 C 1.38240 * 120.00443 * 0.44344 * 25 24 23 27 27 C 1.38232 * 119.99635 * 359.81071 * 26 25 24 28 28 C 1.38235 * 119.99534 * 227.85401 * 23 5 3 29 29 H 1.08992 * 109.46935 * 170.06269 * 1 2 3 30 30 H 1.09001 * 109.46834 * 290.06805 * 1 2 3 31 31 H 1.09008 * 109.46837 * 50.06268 * 1 2 3 32 32 H 1.08998 * 109.47410 * 240.00107 * 2 1 3 33 33 H 1.09004 * 109.47051 * 119.99793 * 2 1 3 34 34 H 1.08997 * 109.47422 * 297.24912 * 4 3 2 35 35 H 1.08997 * 109.47207 * 57.25110 * 4 3 2 36 36 H 1.09005 * 109.47496 * 177.24875 * 4 3 2 37 37 H 1.08998 * 109.47021 * 266.91330 * 10 9 7 38 38 H 1.09003 * 109.46422 * 26.91471 * 10 9 7 39 39 H 1.09000 * 109.46882 * 146.90893 * 10 9 7 40 40 H 1.08991 * 109.47790 * 30.27385 * 11 9 7 41 41 H 1.09004 * 109.46863 * 150.27658 * 11 9 7 42 42 H 1.08992 * 109.47620 * 300.00278 * 12 11 9 43 43 H 1.09004 * 109.46801 * 60.00718 * 12 11 9 44 44 H 1.09000 * 109.47167 * 300.00257 * 13 12 11 45 45 H 1.08998 * 109.47092 * 60.00444 * 13 12 11 46 46 H 0.97003 * 119.99510 * 0.02562 * 14 13 12 47 47 H 0.97000 * 120.00141 * 180.02562 * 18 17 15 48 48 H 1.07998 * 119.99687 * 0.02562 * 24 23 5 49 49 H 1.08007 * 120.00058 * 180.27850 * 25 24 23 50 50 H 1.07992 * 119.99806 * 179.83110 * 26 25 24 51 51 H 1.07993 * 120.00034 * 179.97438 * 27 26 25 52 52 H 1.07995 * 120.00377 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3990 1.4557 -0.5004 5 6 1.9143 1.9806 1.3387 6 1 2.3477 1.3021 2.0735 7 6 0.4634 2.2191 1.6696 8 8 -0.2983 2.6092 0.8101 9 7 0.0125 1.9989 2.9203 10 6 0.9517 1.6354 3.9843 11 6 -1.4162 2.1288 3.2173 12 6 -1.7225 3.5702 3.6291 13 6 -3.2145 3.7057 3.9399 14 7 -3.5079 5.0860 4.3335 15 6 -4.7874 5.4474 4.6608 16 1 -5.5805 4.7149 4.6284 17 6 -5.0656 6.7553 5.0333 18 7 -6.2955 7.1028 5.3475 19 14 -3.6943 8.0227 5.0874 20 1 -3.5811 8.6864 3.7638 21 1 -4.0002 9.0389 6.1261 22 1 -2.4115 7.3503 5.4153 23 6 2.6575 3.2913 1.3653 24 6 2.4645 4.2160 0.3560 25 6 3.1430 5.4200 0.3828 26 6 4.0214 5.6957 1.4140 27 6 4.2184 4.7689 2.4205 28 6 3.5366 3.5665 2.3960 29 1 -0.3633 -1.0122 -0.1773 30 1 -0.3633 0.3526 0.9653 31 1 -0.3633 0.6598 -0.7880 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0560 0.8956 0.1649 35 1 3.4447 1.0272 -1.5016 36 1 3.7197 2.4969 -0.5359 37 1 1.0105 0.5497 4.0617 38 1 1.9378 2.0370 3.7511 39 1 0.6055 2.0490 4.9315 40 1 -1.9964 1.8730 2.3308 41 1 -1.6808 1.4543 4.0317 42 1 -1.1424 3.8259 4.5156 43 1 -1.4579 4.2446 2.8147 44 1 -3.7949 3.4499 3.0535 45 1 -3.4787 3.0313 4.7544 46 1 -2.7956 5.7439 4.3623 47 1 -6.4899 8.0169 5.6074 48 1 1.7808 3.9992 -0.4513 49 1 2.9888 6.1444 -0.4033 50 1 4.5535 6.6353 1.4334 51 1 4.9049 4.9840 3.2259 52 1 3.6904 2.8425 3.1824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699546421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:17 Heat of formation + Delta-G solvation = 26.050550 kcal Electronic energy + Delta-G solvation = -29864.125125 eV Core-core repulsion = 26057.778695 eV Total energy + Delta-G solvation = -3806.346430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97373 -39.08041 -37.41014 -36.05096 -34.95474 -32.86557 -32.13221 -31.21056 -30.50867 -30.17104 -28.09465 -27.09514 -25.38108 -24.52690 -22.96333 -22.60970 -22.09835 -21.20009 -20.86856 -19.12215 -17.52601 -17.46188 -17.29100 -16.54191 -16.13164 -15.53174 -15.13523 -14.96046 -14.73120 -14.45746 -14.30248 -14.27475 -13.77592 -13.61027 -13.49670 -13.26448 -13.22281 -12.96826 -12.77697 -12.76147 -12.55138 -12.39465 -12.14630 -11.99627 -11.85022 -11.67449 -11.30120 -11.24797 -11.14059 -10.93995 -10.88298 -10.75892 -10.45302 -10.10078 -9.89859 -9.54645 -9.13189 -8.89116 -8.83996 -8.68846 -8.63804 -7.17355 -5.71981 -3.06855 1.01273 1.18664 2.56421 2.79057 3.41758 3.45547 3.45767 3.48907 3.70193 4.30851 4.46467 4.53099 4.64292 4.67823 4.76115 4.78918 4.90249 4.93731 4.96533 5.06894 5.11423 5.19333 5.25221 5.27041 5.29450 5.31082 5.37580 5.45965 5.57499 5.61336 5.62798 5.63789 5.69045 5.79066 5.84579 5.85059 5.96908 6.06687 6.17817 6.23756 6.29006 6.31250 6.32492 6.46217 6.63987 6.70449 6.75957 6.81042 6.83517 7.31237 8.04723 8.18591 8.47469 9.26739 9.99499 10.19928 11.46636 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.003212 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.746108 B = 8715.471618 C =10134.946006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 N -0.519 5.519 4 C 0.023 3.977 5 C 0.111 3.889 6 H 0.066 0.934 7 C 0.527 3.473 8 O -0.505 6.505 9 N -0.619 5.619 10 C 0.073 3.927 11 C 0.122 3.878 12 C -0.143 4.143 13 C 0.161 3.839 14 N -0.757 5.757 15 C -0.242 4.242 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.936 5.936 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.086 4.086 24 C -0.080 4.080 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.122 4.122 28 C -0.113 4.113 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.026 0.974 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.136 0.864 49 H 0.124 0.876 50 H 0.122 0.878 51 H 0.123 0.877 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.479 -15.068 -8.827 32.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.243 5.243 4 C -0.125 4.125 5 C -0.001 4.001 6 H 0.083 0.917 7 C 0.313 3.687 8 O -0.378 6.378 9 N -0.354 5.354 10 C -0.070 4.070 11 C -0.001 4.001 12 C -0.182 4.182 13 C 0.033 3.967 14 N -0.402 5.402 15 C -0.372 4.372 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.584 5.584 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.087 4.087 24 C -0.098 4.098 25 C -0.141 4.141 26 C -0.132 4.132 27 C -0.141 4.141 28 C -0.131 4.131 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.154 0.846 49 H 0.142 0.858 50 H 0.140 0.860 51 H 0.141 0.859 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 26.503 -14.631 -9.582 31.753 hybrid contribution 1.467 0.579 0.887 1.810 sum 27.970 -14.052 -8.695 32.487 Atomic orbital electron populations 1.21968 0.94092 1.01324 1.03446 1.22194 0.97040 0.87598 1.00814 1.61763 1.22119 1.18747 1.21720 1.22502 0.87360 1.02919 0.99735 1.20597 0.93341 0.94417 0.91743 0.91663 1.20044 0.89145 0.77562 0.81972 1.90730 1.56986 1.43313 1.46738 1.47915 1.08626 1.70077 1.08745 1.21881 0.93380 1.00174 0.91586 1.21454 0.79522 0.97284 1.01793 1.22099 0.98308 0.96331 1.01422 1.20515 0.91504 0.87384 0.97270 1.42705 1.07756 1.06397 1.83353 1.19083 0.85035 0.95489 1.37606 0.89185 1.24666 0.96040 0.96978 1.01579 1.69703 1.17769 1.18287 1.52644 0.86533 0.82251 0.82103 0.77593 1.21026 1.21714 1.20434 1.19346 0.97953 0.95016 0.96411 1.21171 0.97904 0.92483 0.98284 1.21243 0.96938 0.97011 0.98914 1.21226 0.98258 0.99231 0.94477 1.21067 1.00143 0.93912 0.98929 1.20992 0.96734 0.97666 0.97737 0.92790 0.92640 0.90726 0.90472 0.94791 0.95686 0.90967 0.90438 0.92652 0.91349 0.90472 0.89682 0.90384 0.92199 0.91537 0.95362 0.95642 0.80722 0.93102 0.84620 0.85788 0.86016 0.85907 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.58 37.16 0.32 -1.29 16 2 C 0.05 0.46 5.72 -3.83 -0.02 0.44 16 3 N -0.52 -5.25 4.07 -237.69 -0.97 -6.21 16 4 C 0.02 0.18 8.92 60.06 0.54 0.72 16 5 C 0.11 1.15 1.39 -70.01 -0.10 1.06 16 6 H 0.07 0.57 5.80 -51.93 -0.30 0.27 16 7 C 0.53 6.95 3.89 -10.98 -0.04 6.91 16 8 O -0.50 -8.52 14.68 5.55 0.08 -8.44 16 9 N -0.62 -7.32 2.85 -181.57 -0.52 -7.84 16 10 C 0.07 0.60 9.83 59.85 0.59 1.19 16 11 C 0.12 1.63 5.38 -4.04 -0.02 1.60 16 12 C -0.14 -2.37 5.65 -26.73 -0.15 -2.52 16 13 C 0.16 3.28 6.26 -4.04 -0.03 3.26 16 14 N -0.76 -19.19 5.41 -59.91 -0.32 -19.51 16 15 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 16 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.94 -30.28 13.97 55.49 0.78 -29.50 16 19 Si 0.88 23.05 27.74 -169.99 -4.71 18.33 16 20 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 23 C -0.09 -0.91 3.49 -104.63 -0.37 -1.28 16 24 C -0.08 -0.92 7.63 -39.59 -0.30 -1.22 16 25 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 26 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.11 -1.01 9.04 -39.58 -0.36 -1.37 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.68 5.44 -51.93 -0.28 0.39 16 31 H 0.07 0.96 7.84 -51.92 -0.41 0.55 16 32 H 0.08 0.58 7.82 -51.93 -0.41 0.18 16 33 H 0.03 0.27 7.77 -51.93 -0.40 -0.13 16 34 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.50 8.00 -51.93 -0.42 0.09 16 36 H 0.08 0.67 5.55 -51.93 -0.29 0.38 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.49 4.56 -51.93 -0.24 0.25 16 39 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.08 1.24 7.50 -51.93 -0.39 0.85 16 41 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.36 8.98 5.53 -40.82 -0.23 8.76 16 47 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 48 H 0.14 1.73 7.95 -52.49 -0.42 1.32 16 49 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 52 H 0.12 0.81 6.88 -52.49 -0.36 0.45 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -35.52 405.68 -9.74 -45.25 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.79 Total: 6.20 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.39 Total: -4.39 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -1.03 Total: -63.07 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.71 Total: 18.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.52 -9.74 -45.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699546421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.302 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds