Wall clock time and date at job start Tue Mar 31 2020 18:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47187 * 2 1 4 4 C 1.46896 * 111.00194 * 201.40112 * 3 2 1 5 5 C 1.46906 * 111.00076 * 77.45233 * 3 2 1 6 6 H 1.09003 * 109.47091 * 49.31388 * 5 3 2 7 7 C 1.50709 * 109.46783 * 289.31806 * 5 3 2 8 8 O 1.21284 * 119.99603 * 321.25409 * 7 5 3 9 9 N 1.34771 * 119.99821 * 141.25746 * 7 5 3 10 10 C 1.46501 * 120.00457 * 5.07678 * 9 7 5 11 11 C 1.46502 * 119.99538 * 184.80731 * 9 7 5 12 12 C 1.53003 * 109.46788 * 270.26903 * 11 9 7 13 13 C 1.53002 * 109.47018 * 180.02562 * 12 11 9 14 14 N 1.46498 * 109.47379 * 180.02562 * 13 12 11 15 15 C 1.36930 * 120.00342 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00059 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00281 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00371 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99868 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47367 * 89.99841 * 19 17 15 21 21 H 1.48494 * 109.47069 * 210.00047 * 19 17 15 22 22 H 1.48498 * 109.46824 * 329.99907 * 19 17 15 23 23 C 1.50699 * 109.47252 * 169.32004 * 5 3 2 24 24 C 1.38234 * 120.00255 * 47.57844 * 23 5 3 25 25 C 1.38230 * 119.99744 * 179.78692 * 24 23 5 26 26 C 1.38240 * 120.00443 * 0.44344 * 25 24 23 27 27 C 1.38232 * 119.99635 * 359.81071 * 26 25 24 28 28 C 1.38235 * 119.99534 * 227.85401 * 23 5 3 29 29 H 1.08992 * 109.46935 * 170.06269 * 1 2 3 30 30 H 1.09001 * 109.46834 * 290.06805 * 1 2 3 31 31 H 1.09008 * 109.46837 * 50.06268 * 1 2 3 32 32 H 1.08998 * 109.47410 * 240.00107 * 2 1 3 33 33 H 1.09004 * 109.47051 * 119.99793 * 2 1 3 34 34 H 1.08997 * 109.47422 * 297.24912 * 4 3 2 35 35 H 1.08997 * 109.47207 * 57.25110 * 4 3 2 36 36 H 1.09005 * 109.47496 * 177.24875 * 4 3 2 37 37 H 1.08998 * 109.47021 * 266.91330 * 10 9 7 38 38 H 1.09003 * 109.46422 * 26.91471 * 10 9 7 39 39 H 1.09000 * 109.46882 * 146.90893 * 10 9 7 40 40 H 1.08991 * 109.47790 * 30.27385 * 11 9 7 41 41 H 1.09004 * 109.46863 * 150.27658 * 11 9 7 42 42 H 1.08992 * 109.47620 * 300.00278 * 12 11 9 43 43 H 1.09004 * 109.46801 * 60.00718 * 12 11 9 44 44 H 1.09000 * 109.47167 * 300.00257 * 13 12 11 45 45 H 1.08998 * 109.47092 * 60.00444 * 13 12 11 46 46 H 0.97003 * 119.99510 * 0.02562 * 14 13 12 47 47 H 0.97000 * 120.00141 * 180.02562 * 18 17 15 48 48 H 1.07998 * 119.99687 * 0.02562 * 24 23 5 49 49 H 1.08007 * 120.00058 * 180.27850 * 25 24 23 50 50 H 1.07992 * 119.99806 * 179.83110 * 26 25 24 51 51 H 1.07993 * 120.00034 * 179.97438 * 27 26 25 52 52 H 1.07995 * 120.00377 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3990 1.4557 -0.5004 5 6 1.9143 1.9806 1.3387 6 1 2.3477 1.3021 2.0735 7 6 0.4634 2.2191 1.6696 8 8 -0.2983 2.6092 0.8101 9 7 0.0125 1.9989 2.9203 10 6 0.9517 1.6354 3.9843 11 6 -1.4162 2.1288 3.2173 12 6 -1.7225 3.5702 3.6291 13 6 -3.2145 3.7057 3.9399 14 7 -3.5079 5.0860 4.3335 15 6 -4.7874 5.4474 4.6608 16 1 -5.5805 4.7149 4.6284 17 6 -5.0656 6.7553 5.0333 18 7 -6.2955 7.1028 5.3475 19 14 -3.6943 8.0227 5.0874 20 1 -3.5811 8.6864 3.7638 21 1 -4.0002 9.0389 6.1261 22 1 -2.4115 7.3503 5.4153 23 6 2.6575 3.2913 1.3653 24 6 2.4645 4.2160 0.3560 25 6 3.1430 5.4200 0.3828 26 6 4.0214 5.6957 1.4140 27 6 4.2184 4.7689 2.4205 28 6 3.5366 3.5665 2.3960 29 1 -0.3633 -1.0122 -0.1773 30 1 -0.3633 0.3526 0.9653 31 1 -0.3633 0.6598 -0.7880 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0560 0.8956 0.1649 35 1 3.4447 1.0272 -1.5016 36 1 3.7197 2.4969 -0.5359 37 1 1.0105 0.5497 4.0617 38 1 1.9378 2.0370 3.7511 39 1 0.6055 2.0490 4.9315 40 1 -1.9964 1.8730 2.3308 41 1 -1.6808 1.4543 4.0317 42 1 -1.1424 3.8259 4.5156 43 1 -1.4579 4.2446 2.8147 44 1 -3.7949 3.4499 3.0535 45 1 -3.4787 3.0313 4.7544 46 1 -2.7956 5.7439 4.3623 47 1 -6.4899 8.0169 5.6074 48 1 1.7808 3.9992 -0.4513 49 1 2.9888 6.1444 -0.4033 50 1 4.5535 6.6353 1.4334 51 1 4.9049 4.9840 3.2259 52 1 3.6904 2.8425 3.1824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699546421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:16 Heat of formation + Delta-G solvation = 2.611456 kcal Electronic energy + Delta-G solvation = -29865.141520 eV Core-core repulsion = 26057.778695 eV Total energy + Delta-G solvation = -3807.362825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81825 -39.89745 -38.22569 -37.41441 -36.44527 -34.23952 -33.44030 -32.18680 -31.81444 -31.07656 -28.98185 -28.04685 -26.65886 -25.38376 -24.30483 -23.63696 -22.81020 -22.78891 -21.86028 -20.00968 -19.68085 -18.33459 -18.07279 -17.45789 -16.88547 -16.67208 -16.32316 -16.12246 -15.91323 -15.66326 -15.47568 -15.18631 -15.04117 -14.84642 -14.44146 -14.27843 -14.08444 -14.02180 -13.78500 -13.70230 -13.59275 -13.46562 -13.23995 -13.00904 -12.84997 -12.77989 -12.59401 -12.49304 -12.40659 -12.07673 -12.02400 -11.94698 -11.84265 -11.82050 -11.68522 -11.02115 -10.87915 -9.83893 -9.65981 -9.63165 -9.35076 -9.31831 -8.06832 -5.40908 0.29927 0.47629 1.33446 1.37980 1.44784 1.62826 1.91245 2.44658 2.74733 2.98355 3.24342 3.54135 3.57006 3.69602 3.83131 4.00315 4.03514 4.12355 4.15526 4.19041 4.23985 4.26188 4.33095 4.40162 4.46815 4.56872 4.58157 4.58709 4.64298 4.65370 4.69433 4.71381 4.85704 4.87090 4.89254 4.99798 5.01466 5.02631 5.14104 5.22929 5.24681 5.36595 5.50570 5.53964 5.57681 5.61145 5.70909 5.91869 6.03987 6.07636 6.17523 6.42543 7.02855 7.24187 7.79008 7.98230 9.14751 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.003212 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.746108 B = 8715.471618 C =10134.946006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.541 5.541 4 C 0.027 3.973 5 C 0.119 3.881 6 H 0.090 0.910 7 C 0.522 3.478 8 O -0.554 6.554 9 N -0.618 5.618 10 C 0.065 3.935 11 C 0.129 3.871 12 C -0.124 4.124 13 C 0.158 3.842 14 N -0.761 5.761 15 C -0.240 4.240 16 H 0.058 0.942 17 C -0.063 4.063 18 N -0.982 5.982 19 Si 0.956 3.044 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.253 1.253 23 C -0.096 4.096 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.112 4.112 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.016 0.984 45 H 0.038 0.962 46 H 0.364 0.636 47 H 0.260 0.740 48 H 0.108 0.892 49 H 0.129 0.871 50 H 0.141 0.859 51 H 0.150 0.850 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.404 -16.045 -7.322 36.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 N -0.267 5.267 4 C -0.120 4.120 5 C 0.007 3.993 6 H 0.108 0.892 7 C 0.310 3.690 8 O -0.431 6.431 9 N -0.351 5.351 10 C -0.077 4.077 11 C 0.006 3.994 12 C -0.163 4.163 13 C 0.031 3.969 14 N -0.407 5.407 15 C -0.370 4.370 16 H 0.076 0.924 17 C -0.254 4.254 18 N -0.633 5.633 19 Si 0.783 3.217 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.177 1.177 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.155 4.155 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.197 0.803 47 H 0.068 0.932 48 H 0.127 0.873 49 H 0.147 0.853 50 H 0.159 0.841 51 H 0.167 0.833 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 30.486 -15.661 -8.066 35.210 hybrid contribution 0.180 0.816 0.382 0.919 sum 30.666 -14.845 -7.684 34.926 Atomic orbital electron populations 1.21891 0.95819 1.01290 1.01288 1.22204 0.95451 0.87389 1.02350 1.61676 1.23533 1.19476 1.22009 1.22470 0.86447 1.02630 1.00435 1.20542 0.91199 0.94981 0.92533 0.89236 1.20649 0.90121 0.76478 0.81784 1.90710 1.58460 1.45576 1.48316 1.47996 1.08393 1.69366 1.09388 1.22181 0.93031 1.01988 0.90497 1.21270 0.80837 0.95479 1.01846 1.21900 0.95408 0.98127 1.00884 1.20680 0.94161 0.85093 0.96932 1.42750 1.06195 1.08477 1.83272 1.19076 0.86173 0.95040 1.36759 0.92405 1.25523 0.98771 0.99342 1.01811 1.69879 1.20294 1.18888 1.54219 0.85394 0.79832 0.78992 0.77502 1.20836 1.21437 1.17738 1.19434 0.98640 0.94854 0.96771 1.21063 0.98490 0.93794 0.98514 1.21400 0.97453 0.96808 0.99850 1.21520 0.97810 1.00290 0.94085 1.21448 1.00018 0.93451 0.99200 1.21306 0.95786 0.98388 0.97586 0.91204 0.94285 0.93820 0.89004 0.93026 0.94134 0.90210 0.91436 0.90175 0.90006 0.89708 0.91638 0.87504 0.90921 0.94121 0.96550 0.94381 0.80300 0.93160 0.87342 0.85330 0.84069 0.83264 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.58 71.98 0.62 -2.48 16 2 C 0.05 0.87 5.72 86.30 0.49 1.36 16 3 N -0.54 -10.48 4.07 -905.91 -3.69 -14.16 16 4 C 0.03 0.40 8.92 127.69 1.14 1.54 16 5 C 0.12 2.29 1.39 43.42 0.06 2.35 16 6 H 0.09 1.23 5.80 -2.39 -0.01 1.22 16 7 C 0.52 13.49 3.89 87.66 0.34 13.84 16 8 O -0.55 -19.56 14.68 -3.04 -0.04 -19.60 16 9 N -0.62 -13.47 2.85 -846.74 -2.41 -15.88 16 10 C 0.06 0.81 9.83 127.77 1.26 2.06 16 11 C 0.13 3.29 5.38 86.38 0.46 3.76 16 12 C -0.12 -4.01 5.65 30.60 0.17 -3.83 16 13 C 0.16 6.40 6.26 86.38 0.54 6.94 16 14 N -0.76 -38.34 5.41 -343.46 -1.86 -40.20 16 15 C -0.24 -14.45 10.47 84.03 0.88 -13.57 16 16 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 17 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.98 -64.89 13.97 21.65 0.30 -64.58 16 19 Si 0.96 47.47 27.74 68.60 1.90 49.37 16 20 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.25 -11.38 6.52 99.48 0.65 -10.73 16 23 C -0.10 -1.89 3.49 -19.87 -0.07 -1.96 16 24 C -0.10 -2.33 7.63 22.27 0.17 -2.16 16 25 C -0.14 -2.74 10.05 22.27 0.22 -2.51 16 26 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 28 C -0.11 -1.66 9.04 22.27 0.20 -1.45 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.95 5.44 -2.39 -0.01 0.93 16 31 H 0.04 1.18 7.84 -2.38 -0.02 1.17 16 32 H 0.09 1.21 7.82 -2.39 -0.02 1.19 16 33 H 0.05 0.67 7.77 -2.38 -0.02 0.65 16 34 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 1.00 8.00 -2.39 -0.02 0.99 16 36 H 0.07 1.13 5.55 -2.38 -0.01 1.11 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.81 4.56 -2.39 -0.01 0.80 16 39 H 0.08 0.97 8.09 -2.39 -0.02 0.96 16 40 H 0.07 1.94 7.50 -2.39 -0.02 1.93 16 41 H 0.11 2.11 8.07 -2.38 -0.02 2.09 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.36 17.63 5.53 -92.71 -0.51 17.11 16 47 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 48 H 0.11 3.04 7.95 -2.91 -0.02 3.02 16 49 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 51 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 52 H 0.15 1.28 6.88 -2.91 -0.02 1.26 16 Total: -1.00 -80.27 405.68 1.94 -78.34 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.32 Total: 29.45 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 7.41 Total: -2.73 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -7.65 Total: -134.83 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.90 Total: 49.37 kcal Total: -80.27 1.94 -78.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699546421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.948 kcal (2) G-P(sol) polarization free energy of solvation -80.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds