Wall clock time and date at job start Tue Mar 31 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46974 * 2 1 4 4 C 1.35532 * 125.67621 * 263.11365 * 3 2 1 5 5 C 1.35458 * 108.87115 * 179.97438 * 4 3 2 6 6 C 1.39837 * 107.86462 * 359.74016 * 5 4 3 7 7 C 1.37653 * 125.68334 * 83.09250 * 3 2 1 8 8 C 1.46688 * 126.22684 * 0.02562 * 7 3 2 9 9 O 1.21694 * 119.99902 * 5.39163 * 8 7 3 10 10 N 1.34777 * 119.99507 * 185.38617 * 8 7 3 11 11 C 1.46501 * 119.99800 * 174.99118 * 10 8 7 12 12 C 1.52996 * 109.47242 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47154 * 305.00554 * 12 11 10 14 14 C 1.52998 * 109.46806 * 65.00042 * 12 11 10 15 15 C 1.53007 * 109.47041 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46663 * 299.99899 * 15 14 12 17 17 H 1.08999 * 109.47012 * 299.99806 * 16 15 14 18 18 C 1.53007 * 109.46663 * 180.02562 * 16 15 14 19 19 N 1.46492 * 109.47105 * 65.00372 * 18 16 15 20 20 C 1.36936 * 120.00095 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99618 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00441 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00043 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00319 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47185 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47045 * 120.00124 * 24 22 20 27 27 H 1.48500 * 109.47339 * 240.00164 * 24 22 20 28 28 C 1.52998 * 109.47309 * 60.00266 * 16 15 14 29 29 C 1.53000 * 109.47150 * 299.99718 * 28 16 15 30 30 H 1.08998 * 109.47026 * 300.00186 * 1 2 3 31 31 H 1.09007 * 109.46754 * 60.00098 * 1 2 3 32 32 H 1.08996 * 109.46768 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47026 * 239.99814 * 2 1 3 34 34 H 1.08999 * 109.46532 * 119.99599 * 2 1 3 35 35 H 1.08005 * 125.56589 * 359.94386 * 4 3 2 36 36 H 1.08002 * 126.06686 * 180.02562 * 5 4 3 37 37 H 1.07998 * 126.45705 * 180.29777 * 6 5 4 38 38 H 0.97000 * 120.00289 * 354.99491 * 10 8 7 39 39 H 1.09003 * 109.46833 * 60.00151 * 11 10 8 40 40 H 1.08998 * 109.47251 * 300.00207 * 11 10 8 41 41 H 1.08994 * 109.47321 * 299.99777 * 14 12 11 42 42 H 1.09003 * 109.47334 * 60.00371 * 14 12 11 43 43 H 1.08995 * 109.47011 * 180.02562 * 15 14 12 44 44 H 1.08999 * 109.47248 * 59.99560 * 15 14 12 45 45 H 1.09004 * 109.46564 * 185.00299 * 18 16 15 46 46 H 1.08997 * 109.46778 * 304.99817 * 18 16 15 47 47 H 0.97003 * 120.00481 * 359.97438 * 19 18 16 48 48 H 0.96993 * 120.00275 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.47334 * 59.99320 * 28 16 15 50 50 H 1.08994 * 109.47321 * 179.97438 * 28 16 15 51 51 H 1.08994 * 109.47561 * 180.02562 * 29 28 16 52 52 H 1.08999 * 109.47017 * 300.00366 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4063 2.0824 -1.0930 5 6 2.7937 3.3209 -0.7043 6 6 2.6382 3.4032 0.6830 7 6 2.1592 2.1830 1.1100 8 6 1.8498 1.8093 2.4943 9 8 1.5189 0.6681 2.7570 10 7 1.9320 2.7300 3.4752 11 6 1.5182 2.3871 4.8381 12 6 1.7105 3.6005 5.7499 13 1 2.7422 3.9457 5.6828 14 6 0.7678 4.7228 5.3109 15 6 0.9605 5.9365 6.2223 16 6 0.6475 5.5437 7.6676 17 1 -0.3843 5.1988 7.7350 18 6 0.8396 6.7576 8.5790 19 7 -0.1447 7.7868 8.2353 20 6 -0.1648 8.9714 8.9220 21 1 0.5448 9.1468 9.7171 22 6 -1.0970 9.9469 8.5961 23 7 -1.9614 9.7334 7.6267 24 14 -1.1248 11.5626 9.5332 25 1 -0.0589 11.5536 10.5671 26 1 -0.8912 12.6858 8.5903 27 1 -2.4470 11.7326 10.1876 28 6 1.5902 4.4215 8.1067 29 6 1.3976 3.2078 7.1952 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.4069 1.7138 -2.1082 36 1 3.1539 4.1068 -1.3515 37 1 2.8548 4.2604 1.3032 38 1 2.2652 3.6195 3.2788 39 1 2.1237 1.5578 5.2038 40 1 0.4675 2.0970 4.8367 41 1 0.9910 5.0029 4.2815 42 1 -0.2640 4.3777 5.3780 43 1 0.2886 6.7358 5.9098 44 1 1.9922 6.2814 6.1549 45 1 0.7034 6.4570 9.6179 46 1 1.8449 7.1570 8.4451 47 1 -0.7817 7.6295 7.5209 48 1 -2.6130 10.4149 7.3992 49 1 2.6220 4.7664 8.0391 50 1 1.3675 4.1419 9.1363 51 1 2.0688 2.4081 7.5082 52 1 0.3658 2.8629 7.2627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699981885.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:21 Heat of formation + Delta-G solvation = -8.490114 kcal Electronic energy + Delta-G solvation = -28382.890509 eV Core-core repulsion = 24575.046283 eV Total energy + Delta-G solvation = -3807.844225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67943 -39.60797 -38.54129 -35.64602 -34.60357 -33.94122 -32.09492 -30.61769 -30.31326 -29.61276 -29.30398 -26.58279 -24.29159 -23.88170 -22.79591 -22.68031 -21.70314 -20.75558 -20.46441 -19.71990 -19.41963 -18.11223 -17.06608 -16.26565 -15.89366 -15.74933 -15.23210 -14.83619 -14.68035 -14.52925 -14.22231 -14.10173 -14.01660 -13.75795 -13.60443 -13.17823 -12.99874 -12.79354 -12.77718 -12.60434 -12.51782 -12.26035 -12.16348 -11.97339 -11.58131 -11.49868 -11.36788 -10.94844 -10.87242 -10.81028 -10.71537 -10.19597 -10.14424 -10.06863 -9.91756 -9.72404 -9.51603 -9.28543 -9.03162 -8.83545 -8.47232 -6.86620 -5.73395 -3.01090 1.23399 2.34766 2.48862 3.14027 3.19977 3.44968 3.50580 3.52845 4.36060 4.49581 4.60249 4.63732 4.67948 4.70405 4.74910 4.82301 4.93401 5.06746 5.10437 5.20525 5.32357 5.35818 5.38210 5.45570 5.51906 5.59197 5.63378 5.66821 5.70630 5.75328 5.75780 5.78559 5.79626 5.92652 6.06997 6.16207 6.17713 6.25299 6.31510 6.33712 6.38340 6.46970 6.49318 6.60860 6.72276 6.77808 6.91878 6.93347 7.02092 7.30207 7.73728 7.99216 8.46259 9.57155 10.16961 10.51441 11.49769 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.001999 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.963995 B =14007.041422 C =14944.215663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.407 5.407 4 C 0.013 3.987 5 C -0.207 4.207 6 C -0.141 4.141 7 C -0.052 4.052 8 C 0.587 3.413 9 O -0.552 6.552 10 N -0.715 5.715 11 C 0.127 3.873 12 C -0.098 4.098 13 H 0.076 0.924 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.094 4.094 17 H 0.068 0.932 18 C 0.157 3.843 19 N -0.732 5.732 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.017 4.017 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.109 4.109 29 C -0.108 4.108 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.404 0.596 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.061 0.939 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 -20.746 -16.681 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.081 5.081 4 C -0.122 4.122 5 C -0.231 4.231 6 C -0.167 4.167 7 C -0.166 4.166 8 C 0.375 3.625 9 O -0.432 6.432 10 N -0.366 5.366 11 C 0.004 3.996 12 C -0.117 4.117 13 H 0.095 0.905 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.113 4.113 17 H 0.087 0.913 18 C 0.029 3.971 19 N -0.376 5.376 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.147 4.147 29 C -0.146 4.146 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.184 0.816 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.239 0.761 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.853 -21.816 -16.312 28.968 hybrid contribution -0.146 1.426 0.044 1.434 sum 9.707 -20.390 -16.268 27.832 Atomic orbital electron populations 1.22070 0.93967 1.03084 1.02947 1.22044 0.96068 0.79590 1.04814 1.44074 1.46792 1.11648 1.05564 1.22027 1.05057 0.93375 0.91753 1.20839 1.09640 0.97342 0.95301 1.21388 1.03765 0.95792 0.95762 1.20059 1.15416 0.92984 0.88110 1.16993 0.77159 0.84826 0.83475 1.90777 1.49087 1.19347 1.83954 1.45691 1.66396 1.15610 1.08948 1.21490 1.00519 0.97675 0.79924 1.21441 1.00770 0.94517 0.94970 0.90520 1.21637 0.99307 0.95311 0.98885 1.21520 1.01964 0.96960 0.94209 1.21323 0.99306 0.95348 0.95281 0.91318 1.20690 0.93018 0.88176 0.95215 1.42398 1.38110 1.14654 1.42474 1.19295 1.12870 0.92327 1.12241 0.91234 1.24733 0.98627 0.98711 0.99143 1.69667 1.21904 1.34602 1.32179 0.86128 0.77194 0.83985 0.78976 1.20605 1.21911 1.21939 1.21501 0.99898 0.94697 0.98653 1.21470 1.01830 0.97986 0.93289 0.91471 0.92340 0.90691 0.89420 0.87663 0.81577 0.83992 0.83868 0.76058 0.91401 0.91314 0.92456 0.91818 0.90723 0.92374 0.96606 0.96531 0.78255 0.93633 0.92063 0.91915 0.92077 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.10 0.75 6.15 -4.04 -0.02 0.72 16 3 N -0.41 -3.85 2.76 -112.87 -0.31 -4.16 16 4 C 0.01 0.10 11.36 -16.91 -0.19 -0.09 16 5 C -0.21 -1.75 10.81 -39.98 -0.43 -2.19 16 6 C -0.14 -1.32 10.35 -39.12 -0.41 -1.73 16 7 C -0.05 -0.56 6.89 -81.98 -0.56 -1.13 16 8 C 0.59 6.97 7.77 -12.85 -0.10 6.87 16 9 O -0.55 -7.83 14.54 5.19 0.08 -7.76 16 10 N -0.72 -7.09 5.27 -61.62 -0.32 -7.42 16 11 C 0.13 1.27 5.07 -4.04 -0.02 1.25 16 12 C -0.10 -0.97 2.22 -90.62 -0.20 -1.17 16 13 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.11 -1.33 5.08 -26.73 -0.14 -1.46 16 15 C -0.11 -1.62 5.08 -26.72 -0.14 -1.75 16 16 C -0.09 -1.47 2.22 -90.61 -0.20 -1.67 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 18 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 19 N -0.73 -18.64 5.33 -59.91 -0.32 -18.96 16 20 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 24 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 C -0.11 -1.35 5.21 -26.73 -0.14 -1.49 16 29 C -0.11 -1.11 5.21 -26.73 -0.14 -1.25 16 30 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.11 0.99 6.61 -51.93 -0.34 0.65 16 35 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.14 1.08 7.45 -52.49 -0.39 0.69 16 38 H 0.40 3.33 6.55 -40.82 -0.27 3.06 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.61 7.18 -51.93 -0.37 0.24 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.33 7.18 -51.93 -0.37 0.96 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.20 6.85 -40.82 -0.28 9.92 16 48 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -33.33 410.68 -10.74 -44.07 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -9.17 Total: 8.42 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.58 Total: -10.24 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.23 Total: -58.29 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.76 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.33 -10.74 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699981885.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.583 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds