Wall clock time and date at job start Tue Mar 31 2020 18:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46974 * 2 1 4 4 C 1.35532 * 125.67621 * 263.11365 * 3 2 1 5 5 C 1.35458 * 108.87115 * 179.97438 * 4 3 2 6 6 C 1.39837 * 107.86462 * 359.74016 * 5 4 3 7 7 C 1.37653 * 125.68334 * 83.09250 * 3 2 1 8 8 C 1.46688 * 126.22684 * 0.02562 * 7 3 2 9 9 O 1.21694 * 119.99902 * 5.39163 * 8 7 3 10 10 N 1.34777 * 119.99507 * 185.38617 * 8 7 3 11 11 C 1.46501 * 119.99800 * 174.99118 * 10 8 7 12 12 C 1.52996 * 109.47242 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47154 * 305.00554 * 12 11 10 14 14 C 1.52998 * 109.46806 * 65.00042 * 12 11 10 15 15 C 1.53007 * 109.47041 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46663 * 299.99899 * 15 14 12 17 17 H 1.08999 * 109.47012 * 299.99806 * 16 15 14 18 18 C 1.53007 * 109.46663 * 180.02562 * 16 15 14 19 19 N 1.46492 * 109.47105 * 65.00372 * 18 16 15 20 20 C 1.36936 * 120.00095 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99618 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00441 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00043 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00319 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47185 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47045 * 120.00124 * 24 22 20 27 27 H 1.48500 * 109.47339 * 240.00164 * 24 22 20 28 28 C 1.52998 * 109.47309 * 60.00266 * 16 15 14 29 29 C 1.53000 * 109.47150 * 299.99718 * 28 16 15 30 30 H 1.08998 * 109.47026 * 300.00186 * 1 2 3 31 31 H 1.09007 * 109.46754 * 60.00098 * 1 2 3 32 32 H 1.08996 * 109.46768 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47026 * 239.99814 * 2 1 3 34 34 H 1.08999 * 109.46532 * 119.99599 * 2 1 3 35 35 H 1.08005 * 125.56589 * 359.94386 * 4 3 2 36 36 H 1.08002 * 126.06686 * 180.02562 * 5 4 3 37 37 H 1.07998 * 126.45705 * 180.29777 * 6 5 4 38 38 H 0.97000 * 120.00289 * 354.99491 * 10 8 7 39 39 H 1.09003 * 109.46833 * 60.00151 * 11 10 8 40 40 H 1.08998 * 109.47251 * 300.00207 * 11 10 8 41 41 H 1.08994 * 109.47321 * 299.99777 * 14 12 11 42 42 H 1.09003 * 109.47334 * 60.00371 * 14 12 11 43 43 H 1.08995 * 109.47011 * 180.02562 * 15 14 12 44 44 H 1.08999 * 109.47248 * 59.99560 * 15 14 12 45 45 H 1.09004 * 109.46564 * 185.00299 * 18 16 15 46 46 H 1.08997 * 109.46778 * 304.99817 * 18 16 15 47 47 H 0.97003 * 120.00481 * 359.97438 * 19 18 16 48 48 H 0.96993 * 120.00275 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.47334 * 59.99320 * 28 16 15 50 50 H 1.08994 * 109.47321 * 179.97438 * 28 16 15 51 51 H 1.08994 * 109.47561 * 180.02562 * 29 28 16 52 52 H 1.08999 * 109.47017 * 300.00366 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4063 2.0824 -1.0930 5 6 2.7937 3.3209 -0.7043 6 6 2.6382 3.4032 0.6830 7 6 2.1592 2.1830 1.1100 8 6 1.8498 1.8093 2.4943 9 8 1.5189 0.6681 2.7570 10 7 1.9320 2.7300 3.4752 11 6 1.5182 2.3871 4.8381 12 6 1.7105 3.6005 5.7499 13 1 2.7422 3.9457 5.6828 14 6 0.7678 4.7228 5.3109 15 6 0.9605 5.9365 6.2223 16 6 0.6475 5.5437 7.6676 17 1 -0.3843 5.1988 7.7350 18 6 0.8396 6.7576 8.5790 19 7 -0.1447 7.7868 8.2353 20 6 -0.1648 8.9714 8.9220 21 1 0.5448 9.1468 9.7171 22 6 -1.0970 9.9469 8.5961 23 7 -1.9614 9.7334 7.6267 24 14 -1.1248 11.5626 9.5332 25 1 -0.0589 11.5536 10.5671 26 1 -0.8912 12.6858 8.5903 27 1 -2.4470 11.7326 10.1876 28 6 1.5902 4.4215 8.1067 29 6 1.3976 3.2078 7.1952 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.4069 1.7138 -2.1082 36 1 3.1539 4.1068 -1.3515 37 1 2.8548 4.2604 1.3032 38 1 2.2652 3.6195 3.2788 39 1 2.1237 1.5578 5.2038 40 1 0.4675 2.0970 4.8367 41 1 0.9910 5.0029 4.2815 42 1 -0.2640 4.3777 5.3780 43 1 0.2886 6.7358 5.9098 44 1 1.9922 6.2814 6.1549 45 1 0.7034 6.4570 9.6179 46 1 1.8449 7.1570 8.4451 47 1 -0.7817 7.6295 7.5209 48 1 -2.6130 10.4149 7.3992 49 1 2.6220 4.7664 8.0391 50 1 1.3675 4.1419 9.1363 51 1 2.0688 2.4081 7.5082 52 1 0.3658 2.8629 7.2627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699981885.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:19 Heat of formation + Delta-G solvation = -27.767875 kcal Electronic energy + Delta-G solvation = -28383.726455 eV Core-core repulsion = 24575.046283 eV Total energy + Delta-G solvation = -3808.680172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.35113 -40.52472 -39.57688 -36.95321 -35.74365 -34.94130 -33.63133 -31.85947 -31.59614 -30.29757 -30.20699 -27.89787 -25.82705 -24.55154 -24.17026 -23.69321 -22.77305 -21.60822 -21.37648 -20.81384 -20.28614 -19.14281 -18.79832 -17.12267 -16.74000 -16.64263 -16.50507 -16.17685 -15.70634 -15.47371 -15.33140 -15.25579 -14.98694 -14.83970 -14.66525 -14.54560 -14.42375 -13.91030 -13.51238 -13.45945 -13.19623 -13.13600 -13.09264 -12.99999 -12.87700 -12.85711 -12.57773 -12.43314 -12.15925 -12.06307 -11.93667 -11.86143 -11.75678 -11.30643 -11.14245 -10.98216 -10.88479 -10.79659 -10.15047 -9.68631 -9.14371 -8.97642 -7.94965 -5.23151 0.49326 1.46622 1.47570 1.57783 1.68899 1.85260 2.38919 2.41486 2.56125 3.38360 3.64050 3.78539 3.78864 3.81449 3.86174 4.00041 4.09670 4.16980 4.22671 4.34599 4.37069 4.43478 4.44560 4.49183 4.56795 4.59398 4.64123 4.67953 4.74212 4.78786 4.85193 4.86125 4.96126 5.06215 5.11484 5.13201 5.18822 5.22497 5.25261 5.30084 5.31401 5.35096 5.39597 5.46771 5.50271 5.61668 5.68628 5.83964 6.04979 6.28116 6.34898 6.52139 7.16560 7.33873 8.11992 8.34948 9.28969 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.001999 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.963995 B =14007.041422 C =14944.215663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 N -0.415 5.415 4 C 0.022 3.978 5 C -0.223 4.223 6 C -0.142 4.142 7 C -0.087 4.087 8 C 0.582 3.418 9 O -0.584 6.584 10 N -0.708 5.708 11 C 0.134 3.866 12 C -0.085 4.085 13 H 0.090 0.910 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.086 4.086 17 H 0.054 0.946 18 C 0.153 3.847 19 N -0.744 5.744 20 C -0.244 4.244 21 H 0.074 0.926 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.293 1.293 28 C -0.102 4.102 29 C -0.104 4.104 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.201 0.799 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.412 0.588 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.014 0.986 46 H 0.019 0.981 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.083 0.917 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.867 -21.416 -17.578 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.089 5.089 4 C -0.113 4.113 5 C -0.247 4.247 6 C -0.169 4.169 7 C -0.200 4.200 8 C 0.372 3.628 9 O -0.466 6.466 10 N -0.359 5.359 11 C 0.011 3.989 12 C -0.104 4.104 13 H 0.109 0.891 14 C -0.144 4.144 15 C -0.141 4.141 16 C -0.104 4.104 17 H 0.072 0.928 18 C 0.027 3.973 19 N -0.387 5.387 20 C -0.376 4.376 21 H 0.092 0.908 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.803 3.197 25 H -0.191 1.191 26 H -0.219 1.219 27 H -0.221 1.221 28 C -0.140 4.140 29 C -0.142 4.142 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.218 0.782 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.032 0.968 46 H 0.037 0.963 47 H 0.206 0.794 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.102 0.898 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.553 -22.489 -17.178 30.566 hybrid contribution -0.632 1.622 0.291 1.765 sum 10.920 -20.867 -16.887 28.980 Atomic orbital electron populations 1.22013 0.94059 1.03707 1.01638 1.22126 0.95957 0.79162 1.05385 1.44296 1.46820 1.12123 1.05644 1.22655 1.02964 0.93028 0.92680 1.21181 1.10055 0.98297 0.95118 1.21696 1.02823 0.95662 0.96670 1.20092 1.17695 0.94134 0.88071 1.17261 0.76701 0.84572 0.84289 1.90751 1.50754 1.20605 1.84505 1.45634 1.65892 1.15765 1.08658 1.21381 0.99923 0.97652 0.79982 1.21320 1.00820 0.93545 0.94687 0.89145 1.21552 0.99408 0.94571 0.98855 1.21414 1.01157 0.97230 0.94263 1.21238 0.99589 0.94643 0.94970 0.92789 1.20893 0.91639 0.88671 0.96087 1.42622 1.38938 1.15177 1.41984 1.19699 1.12475 0.93333 1.12079 0.90802 1.25581 0.98714 1.02299 1.00447 1.69826 1.22780 1.35612 1.33930 0.85063 0.77254 0.79561 0.77834 1.19057 1.21909 1.22072 1.21442 0.99243 0.94021 0.99299 1.21450 1.02352 0.97546 0.92859 0.94696 0.91514 0.89165 0.86134 0.89736 0.78235 0.82196 0.82613 0.75059 0.91134 0.92436 0.91254 0.92798 0.94468 0.91821 0.96762 0.96320 0.79405 0.94032 0.91076 0.91514 0.89804 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.24 71.98 0.74 -1.57 16 2 C 0.09 1.38 6.15 86.38 0.53 1.91 16 3 N -0.42 -7.38 2.76 -511.01 -1.41 -8.79 16 4 C 0.02 0.30 11.36 83.48 0.95 1.25 16 5 C -0.22 -3.33 10.81 22.01 0.24 -3.09 16 6 C -0.14 -2.50 10.35 22.57 0.23 -2.27 16 7 C -0.09 -1.84 6.89 40.35 0.28 -1.57 16 8 C 0.58 13.88 7.77 86.45 0.67 14.56 16 9 O -0.58 -17.00 14.54 -4.33 -0.06 -17.07 16 10 N -0.71 -13.58 5.27 -467.07 -2.46 -16.04 16 11 C 0.13 2.54 5.07 86.38 0.44 2.98 16 12 C -0.09 -1.53 2.22 -10.79 -0.02 -1.56 16 13 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 14 C -0.11 -2.42 5.08 30.60 0.16 -2.26 16 15 C -0.10 -3.06 5.08 30.60 0.16 -2.91 16 16 C -0.09 -2.68 2.22 -10.79 -0.02 -2.70 16 17 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 18 C 0.15 6.21 5.65 86.38 0.49 6.70 16 19 N -0.74 -38.74 5.33 -343.45 -1.83 -40.58 16 20 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 21 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 23 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 24 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 C -0.10 -2.34 5.21 30.59 0.16 -2.19 16 29 C -0.10 -1.93 5.21 30.60 0.16 -1.77 16 30 H 0.03 0.74 7.87 -2.39 -0.02 0.72 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.12 0.92 8.12 -2.39 -0.02 0.90 16 34 H 0.08 1.61 6.61 -2.39 -0.02 1.60 16 35 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.16 2.14 7.45 -2.91 -0.02 2.12 16 38 H 0.41 6.33 6.55 -92.71 -0.61 5.72 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.41 7.18 -2.39 -0.02 1.40 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.38 7.18 -2.39 -0.02 1.36 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.37 20.66 6.85 -92.71 -0.63 20.02 16 48 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 49 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 50 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 52 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -73.61 410.68 2.65 -70.95 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.34 Total: 34.50 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 6.45 Total: -11.72 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -5.42 Total: -125.54 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.07 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -73.61 2.65 -70.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699981885.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.187 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds