Wall clock time and date at job start Tue Mar 31 2020 18:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00064 * 2 1 4 4 C 1.46904 * 110.99802 * 123.95726 * 2 1 3 5 5 C 1.50700 * 109.46968 * 66.04206 * 4 2 1 6 6 C 1.38375 * 119.92790 * 270.27088 * 5 4 2 7 7 C 1.38336 * 120.29293 * 180.28308 * 6 5 4 8 8 C 1.37984 * 120.14391 * 359.44861 * 7 6 5 9 9 C 1.39550 * 119.85051 * 0.27076 * 8 7 6 10 10 C 1.47848 * 120.14575 * 179.97438 * 9 8 7 11 11 O 1.21559 * 120.00078 * 139.96884 * 10 9 8 12 12 N 1.34774 * 119.99898 * 319.97883 * 10 9 8 13 13 C 1.46498 * 120.00039 * 4.75136 * 12 10 9 14 14 C 1.46503 * 119.99579 * 184.75873 * 12 10 9 15 15 C 1.52998 * 109.47471 * 89.99998 * 14 12 10 16 16 C 1.52994 * 109.47199 * 179.97438 * 15 14 12 17 17 N 1.46510 * 109.47178 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00239 * 89.99713 * 17 16 15 19 19 C 1.36930 * 119.99602 * 269.99711 * 17 16 15 20 20 H 1.08005 * 120.00253 * 23.20452 * 19 17 16 21 21 C 1.38811 * 120.00337 * 203.20142 * 19 17 16 22 22 N 1.31628 * 119.99565 * 11.89912 * 21 19 17 23 23 Si 1.86798 * 120.00551 * 191.90298 * 21 19 17 24 24 H 1.48502 * 109.47053 * 89.99984 * 23 21 19 25 25 H 1.48504 * 109.47272 * 209.99504 * 23 21 19 26 26 H 1.48491 * 109.47155 * 329.99957 * 23 21 19 27 27 C 1.37933 * 119.92428 * 90.00388 * 5 4 2 28 28 H 1.09003 * 109.46754 * 296.05134 * 1 2 3 29 29 H 1.09003 * 109.46986 * 56.04578 * 1 2 3 30 30 H 1.08999 * 109.47221 * 176.04302 * 1 2 3 31 31 H 1.09002 * 109.46849 * 183.95717 * 3 2 1 32 32 H 1.08998 * 109.47463 * 303.95376 * 3 2 1 33 33 H 1.08996 * 109.47155 * 63.95651 * 3 2 1 34 34 H 1.08998 * 109.46677 * 306.03783 * 4 2 1 35 35 H 1.09002 * 109.46729 * 186.04204 * 4 2 1 36 36 H 1.08006 * 119.85591 * 0.02634 * 6 5 4 37 37 H 1.07997 * 119.92976 * 179.72573 * 7 6 5 38 38 H 1.07994 * 120.07380 * 180.26017 * 8 7 6 39 39 H 1.08999 * 109.47137 * 87.05831 * 13 12 10 40 40 H 1.09000 * 109.46825 * 207.05837 * 13 12 10 41 41 H 1.08996 * 109.47285 * 327.05725 * 13 12 10 42 42 H 1.09005 * 109.46634 * 209.99777 * 14 12 10 43 43 H 1.08995 * 109.47260 * 329.99415 * 14 12 10 44 44 H 1.09005 * 109.47011 * 299.99548 * 15 14 12 45 45 H 1.08995 * 109.47355 * 59.99475 * 15 14 12 46 46 H 1.09001 * 109.46811 * 299.99203 * 16 15 14 47 47 H 1.08995 * 109.47356 * 59.99524 * 16 15 14 48 48 H 1.08992 * 109.47165 * 89.05540 * 18 17 16 49 49 H 1.08998 * 109.46986 * 209.05990 * 18 17 16 50 50 H 1.09005 * 109.46704 * 329.06195 * 18 17 16 51 51 H 0.96997 * 120.00237 * 180.02562 * 22 21 19 52 52 H 1.08004 * 120.07595 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6368 -2.2205 0.9728 6 6 0.4467 -2.7010 1.4901 7 6 0.1127 -4.0359 1.3483 8 6 0.9602 -4.8949 0.6792 9 6 2.1592 -4.4156 0.1500 10 6 3.0724 -5.3304 -0.5676 11 8 3.6453 -4.9535 -1.5713 12 7 3.2696 -6.5823 -0.1091 13 6 2.5016 -7.0715 1.0385 14 6 4.2522 -7.4538 -0.7582 15 6 5.6169 -7.2692 -0.0915 16 6 6.6428 -8.1798 -0.7690 17 7 7.9497 -8.0026 -0.1310 18 6 8.3265 -8.8384 1.0116 19 6 8.8190 -7.0556 -0.6028 20 1 8.4456 -6.2106 -1.1623 21 6 10.1803 -7.1816 -0.3621 22 7 10.6636 -8.3122 0.1079 23 14 11.3263 -5.7469 -0.7049 24 1 11.4415 -4.9036 0.5121 25 1 12.6678 -6.2630 -1.0781 26 1 10.7807 -4.9333 -1.8209 27 6 2.4930 -3.0685 0.3017 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0709 32 1 1.5899 1.9163 -0.8524 33 1 1.7045 1.8723 0.9233 34 1 1.5612 -0.3872 2.0627 35 1 3.0797 -0.6612 1.1756 36 1 -0.2224 -2.0317 2.0106 37 1 -0.8155 -4.4056 1.7582 38 1 0.6964 -5.9360 0.5655 39 1 1.5585 -7.4936 0.6912 40 1 3.0742 -7.8398 1.5580 41 1 2.3005 -6.2450 1.7201 42 1 3.9373 -8.4927 -0.6598 43 1 4.3258 -7.1949 -1.8144 44 1 5.9317 -6.2303 -0.1899 45 1 5.5433 -7.5280 0.9647 46 1 6.3278 -9.2186 -0.6702 47 1 6.7165 -7.9214 -1.8253 48 1 8.8117 -9.7462 0.6534 49 1 9.0142 -8.2878 1.6534 50 1 7.4336 -9.1030 1.5782 51 1 11.6147 -8.4002 0.2766 52 1 3.4197 -2.6914 -0.1050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700195307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:26 Heat of formation + Delta-G solvation = 30.588024 kcal Electronic energy + Delta-G solvation = -28524.280689 eV Core-core repulsion = 24718.131019 eV Total energy + Delta-G solvation = -3806.149670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.55066 -39.03188 -37.19651 -36.23852 -35.30904 -32.77074 -31.84052 -31.31294 -29.97644 -27.93904 -27.39325 -26.77580 -25.97147 -25.53002 -23.48092 -22.94989 -21.90690 -21.31891 -20.15493 -19.34013 -17.21664 -16.78238 -16.56263 -16.25507 -15.88495 -15.71790 -15.40178 -15.24684 -14.74303 -14.61984 -14.31993 -14.05629 -13.61971 -13.40332 -13.23079 -13.00129 -12.85275 -12.75831 -12.67042 -12.53297 -12.49547 -12.20563 -12.01604 -11.88248 -11.67482 -11.63289 -11.21138 -11.14953 -10.88624 -10.77053 -10.68710 -10.35139 -10.10591 -9.82540 -9.77829 -9.66864 -9.13841 -9.06937 -8.66598 -8.62540 -8.40372 -6.64196 -5.65602 -3.10172 0.76436 1.10667 2.72166 3.02904 3.44707 3.46394 3.50470 3.53355 3.86136 4.35649 4.40573 4.57625 4.58161 4.74449 4.79323 4.92255 4.97024 4.98381 5.08756 5.13621 5.21796 5.23805 5.28094 5.35534 5.41157 5.47366 5.53164 5.55208 5.57599 5.59318 5.63072 5.74914 5.85430 6.07496 6.07914 6.12351 6.16162 6.22561 6.27173 6.52568 6.57566 6.64898 6.66418 6.71147 6.82925 6.90565 7.09870 7.41229 7.46463 7.76267 7.90339 8.22256 8.49914 9.33283 9.96496 10.45520 11.40939 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002553 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.179771 B =10963.099222 C =12733.201750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.093 3.907 5 C -0.087 4.087 6 C -0.096 4.096 7 C -0.129 4.129 8 C -0.094 4.094 9 C -0.123 4.123 10 C 0.555 3.445 11 O -0.527 6.527 12 N -0.609 5.609 13 C 0.073 3.927 14 C 0.116 3.884 15 C -0.150 4.150 16 C 0.155 3.845 17 N -0.604 5.604 18 C 0.165 3.835 19 C -0.249 4.249 20 H 0.068 0.932 21 C -0.002 4.002 22 N -0.912 5.912 23 Si 0.904 3.096 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.279 1.279 27 C -0.043 4.043 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.034 0.966 47 H 0.048 0.952 48 H 0.020 0.980 49 H 0.051 0.949 50 H -0.008 1.008 51 H 0.251 0.749 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.380 11.153 5.757 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.034 4.034 5 C -0.087 4.087 6 C -0.114 4.114 7 C -0.147 4.147 8 C -0.113 4.113 9 C -0.126 4.126 10 C 0.343 3.657 11 O -0.403 6.403 12 N -0.341 5.341 13 C -0.070 4.070 14 C -0.007 4.007 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.326 5.326 18 C 0.020 3.980 19 C -0.379 4.379 20 H 0.086 0.914 21 C -0.199 4.199 22 N -0.557 5.557 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.062 4.062 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.039 0.961 49 H 0.070 0.930 50 H 0.011 0.989 51 H 0.061 0.939 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.699 11.061 4.817 28.390 hybrid contribution 0.361 1.080 0.767 1.373 sum -25.338 12.141 5.584 28.646 Atomic orbital electron populations 1.22481 0.87312 1.02718 1.00281 1.61955 1.08187 1.13765 1.42686 1.22403 1.01145 0.88340 1.00502 1.21076 1.00980 0.89649 0.91687 1.19615 0.94901 0.95079 0.99110 1.21183 0.95808 0.95659 0.98781 1.21031 0.99838 0.93406 1.00391 1.21605 0.93294 1.00386 0.95994 1.19952 0.96370 0.94586 1.01660 1.18367 0.81456 0.81573 0.84351 1.90819 1.49331 1.75355 1.24819 1.47822 1.40427 1.13491 1.32400 1.22103 0.95692 1.00635 0.88613 1.21633 0.88091 0.92664 0.98267 1.22603 0.93790 1.02830 0.99951 1.20623 0.85819 0.95186 0.95672 1.43891 1.13357 1.41955 1.33412 1.20747 0.94077 0.94716 0.88440 1.19239 0.87196 1.00144 1.31316 0.91429 1.25024 0.96870 0.96743 1.01278 1.70076 1.12279 1.23289 1.50083 0.86245 0.80296 0.81968 0.78053 1.21580 1.21771 1.20392 1.21071 0.99526 0.91096 0.94550 0.95733 0.91379 0.90866 0.91020 0.91154 0.95651 0.93694 0.89482 0.86131 0.85502 0.84828 0.92565 0.90679 0.90627 0.90804 0.89794 0.91850 0.92887 0.94729 0.93391 0.96138 0.93044 0.98924 0.93859 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.07 0.55 0.70 16 2 N -0.54 -4.90 5.01 -252.72 -1.27 -6.17 16 3 C 0.02 0.17 9.57 60.06 0.57 0.75 16 4 C 0.09 0.81 5.11 -4.97 -0.03 0.79 16 5 C -0.09 -0.86 4.88 -104.68 -0.51 -1.37 16 6 C -0.10 -0.78 7.94 -39.49 -0.31 -1.09 16 7 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 8 C -0.09 -0.88 7.55 -39.19 -0.30 -1.18 16 9 C -0.12 -1.55 5.21 -104.97 -0.55 -2.10 16 10 C 0.55 8.68 7.34 -12.33 -0.09 8.59 16 11 O -0.53 -10.46 16.48 5.31 0.09 -10.37 16 12 N -0.61 -8.30 2.87 -182.69 -0.52 -8.83 16 13 C 0.07 0.68 8.89 59.85 0.53 1.21 16 14 C 0.12 1.73 5.43 -4.04 -0.02 1.71 16 15 C -0.15 -2.79 5.86 -26.74 -0.16 -2.94 16 16 C 0.16 3.31 5.67 -4.04 -0.02 3.29 16 17 N -0.60 -15.93 2.92 -181.12 -0.53 -16.46 16 18 C 0.16 4.21 8.98 59.85 0.54 4.75 16 19 C -0.25 -7.21 9.66 -15.06 -0.15 -7.36 16 20 H 0.07 1.95 7.86 -52.48 -0.41 1.54 16 21 C 0.00 -0.05 5.08 -17.43 -0.09 -0.13 16 22 N -0.91 -27.51 10.70 55.49 0.59 -26.91 16 23 Si 0.90 22.82 29.57 -169.99 -5.03 17.80 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 27 C -0.04 -0.54 9.29 -39.18 -0.36 -0.90 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.07 0.58 6.15 -51.93 -0.32 0.26 16 31 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 32 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.33 8.07 -51.93 -0.42 -0.09 16 35 H 0.09 0.76 8.00 -51.93 -0.42 0.34 16 36 H 0.12 0.73 8.01 -52.48 -0.42 0.31 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 1.01 5.44 -52.49 -0.29 0.73 16 39 H 0.06 0.40 7.00 -51.93 -0.36 0.03 16 40 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 41 H 0.08 0.66 5.74 -51.93 -0.30 0.36 16 42 H 0.07 0.91 8.07 -51.93 -0.42 0.50 16 43 H 0.08 1.38 7.36 -51.93 -0.38 1.00 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 47 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 48 H 0.02 0.55 7.69 -51.93 -0.40 0.15 16 49 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 50 H -0.01 -0.17 8.08 -51.93 -0.42 -0.59 16 51 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 52 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 414.37 15.07 6.24 6.24 Total: -1.00 -34.91 414.37 -10.31 -45.22 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -9.10 Total: -3.84 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.79 Total: 3.32 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -1.73 Total: -58.37 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.91 -10.31 -45.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700195307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.812 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds